RNA–Protein interactions for RNA: ENST00000555301.1

CHD8-208, Transcript of chromodomain helicase DNA binding protein 8, human

TSL 2

Gene CHD8, Length 918 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD8-208	ENST00000555301	RDH16	O75452	317 aa		13.53	□□□□□ -0.24
CHD8-208	ENST00000555301	RSL1D1	O76021	490 aa	Known RBP	13.53	□□□□□ -0.24
CHD8-208	ENST00000555301	RAB40AL	P0C0E4	278 aa		13.53	□□□□□ -0.24
CHD8-208	ENST00000555301	TCN2	P20062	427 aa		13.53	□□□□□ -0.24
CHD8-208	ENST00000555301	ITGAX	P20702	1163 aa		13.53	□□□□□ -0.24
CHD8-208	ENST00000555301	HIST1H1T	P22492	207 aa	Predicted RBP	13.53	□□□□□ -0.24
CHD8-208	ENST00000555301	ATP5A1	P25705	553 aa	Known RBP	13.53	□□□□□ -0.24
CHD8-208	ENST00000555301	HK2	P52789	917 aa		13.53	□□□□□ -0.24
CHD8-208	ENST00000555301	SNRPN	P63162	240 aa	Known RBP	13.53	□□□□□ -0.24
CHD8-208	ENST00000555301	HMGCS1	Q01581	520 aa		13.53	□□□□□ -0.24
CHD8-208	ENST00000555301	TBL3	Q12788	808 aa	Known RBP	13.53	□□□□□ -0.24
CHD8-208	ENST00000555301	COL9A2	Q14055	689 aa	Predicted RBP	13.53	□□□□□ -0.24
CHD8-208	ENST00000555301	SPIN4	Q56A73	249 aa		13.53	□□□□□ -0.24
CHD8-208	ENST00000555301	MLIP	Q5VWP3	458 aa		13.53	□□□□□ -0.24
CHD8-208	ENST00000555301	FAM219B	Q5XKK7	198 aa		13.53	□□□□□ -0.24
CHD8-208	ENST00000555301	FAM199X	Q6PEV8	388 aa	Predicted RBP	13.53	□□□□□ -0.24
CHD8-208	ENST00000555301	UNQ6494/PRO21346	Q6UXR6	183 aa		13.53	□□□□□ -0.24
CHD8-208	ENST00000555301	OVCH1	Q7RTY7	1134 aa		13.53	□□□□□ -0.24
CHD8-208	ENST00000555301	METTL4	Q8N3J2	472 aa		13.53	□□□□□ -0.24
CHD8-208	ENST00000555301	ZCCHC7	Q8N3Z6	543 aa	Known RBP	13.53	□□□□□ -0.24
CHD8-208	ENST00000555301	DTWD1	Q8N5C7	304 aa		13.53	□□□□□ -0.24
CHD8-208	ENST00000555301	PIWIL2	Q8TC59	973 aa	Known RBP	13.53	□□□□□ -0.24
CHD8-208	ENST00000555301	KIAA1143	Q96AT1	154 aa	Predicted RBP	13.53	□□□□□ -0.24
CHD8-208	ENST00000555301	QRFPR	Q96P65	431 aa		13.53	□□□□□ -0.24
CHD8-208	ENST00000555301	EFHD1	Q9BUP0	239 aa		13.53	□□□□□ -0.24
CHD8-208	ENST00000555301	MRPL1	Q9BYD6	325 aa	Known RBP	13.53	□□□□□ -0.24
CHD8-208	ENST00000555301	DPH1	Q9BZG8	443 aa		13.53	□□□□□ -0.24
CHD8-208	ENST00000555301	SLC26A1	Q9H2B4	701 aa		13.53	□□□□□ -0.24
CHD8-208	ENST00000555301	TUBB1	Q9H4B7	451 aa		13.53	□□□□□ -0.24
CHD8-208	ENST00000555301	AKIRIN1	Q9H9L7	192 aa	Predicted RBP	13.53	□□□□□ -0.24
CHD8-208	ENST00000555301	MKKS	Q9NPJ1	570 aa	Predicted RBP	13.53	□□□□□ -0.24
CHD8-208	ENST00000555301	SLC22A11	Q9NSA0	550 aa		13.53	□□□□□ -0.24
CHD8-208	ENST00000555301	PNPO	Q9NVS9	261 aa		13.53	□□□□□ -0.24
CHD8-208	ENST00000555301	ZNF282	Q9UDV7	671 aa	Predicted RBP	13.53	□□□□□ -0.24
CHD8-208	ENST00000555301	VTI1B	Q9UEU0	232 aa		13.53	□□□□□ -0.24
CHD8-208	ENST00000555301	CACNA1A	O00555	2505 aa		13.53	□□□□□ -0.24
CHD8-208	ENST00000555301		A0A0G2JN53	185 aa		13.52	□□□□□ -0.25
CHD8-208	ENST00000555301	NPIPB8	E9PQR5	432 aa		13.52	□□□□□ -0.25
CHD8-208	ENST00000555301	RTCA	O00442	366 aa	Known RBP	13.52	□□□□□ -0.25
CHD8-208	ENST00000555301	TLX3	O43711	291 aa	Predicted RBP	13.52	□□□□□ -0.25
CHD8-208	ENST00000555301	SKAP2	O75563	359 aa	Predicted RBP	13.52	□□□□□ -0.25
CHD8-208	ENST00000555301	B3GALT4	O96024	378 aa		13.52	□□□□□ -0.25
CHD8-208	ENST00000555301	LINC00032	P0C843	101 aa		13.52	□□□□□ -0.25
CHD8-208	ENST00000555301	IL10	P22301	178 aa		13.52	□□□□□ -0.25
CHD8-208	ENST00000555301	PRPH2	P23942	346 aa		13.52	□□□□□ -0.25
CHD8-208	ENST00000555301	BSG	P35613	385 aa		13.52	□□□□□ -0.25
CHD8-208	ENST00000555301	MDH1	P40925	334 aa	Known RBP	13.52	□□□□□ -0.25
CHD8-208	ENST00000555301	RPS15	P62841	145 aa	Known RBP	13.52	□□□□□ -0.25
CHD8-208	ENST00000555301	OCA2	Q04671	838 aa		13.52	□□□□□ -0.25
CHD8-208	ENST00000555301	ACSM2A	Q08AH3	577 aa		13.52	□□□□□ -0.25
CHD8-208	ENST00000555301	NCF4	Q15080	339 aa		13.52	□□□□□ -0.25
CHD8-208	ENST00000555301	PDCD2	Q16342	344 aa	Predicted RBP	13.52	□□□□□ -0.25
CHD8-208	ENST00000555301	SPDYA	Q5MJ70	313 aa		13.52	□□□□□ -0.25
CHD8-208	ENST00000555301	ACSM2B	Q68CK6	577 aa		13.52	□□□□□ -0.25
CHD8-208	ENST00000555301	LCN10	Q6JVE6	187 aa		13.52	□□□□□ -0.25
CHD8-208	ENST00000555301	MRPL14	Q6P1L8	145 aa	Known RBP	13.52	□□□□□ -0.25
CHD8-208	ENST00000555301	ZNF793	Q6ZN11	406 aa		13.52	□□□□□ -0.25
CHD8-208	ENST00000555301	COX15	Q7KZN9	410 aa		13.52	□□□□□ -0.25
CHD8-208	ENST00000555301	AMER3	Q8N944	861 aa		13.52	□□□□□ -0.25
CHD8-208	ENST00000555301	ACOT4	Q8N9L9	421 aa		13.52	□□□□□ -0.25
CHD8-208	ENST00000555301	ADAMTS18	Q8TE60	1221 aa		13.52	□□□□□ -0.25
CHD8-208	ENST00000555301	CT55	Q8WUE5	264 aa		13.52	□□□□□ -0.25
CHD8-208	ENST00000555301	CHTF18	Q8WVB6	975 aa		13.52	□□□□□ -0.25
CHD8-208	ENST00000555301	ZDHHC19	Q8WVZ1	309 aa	Predicted RBP	13.52	□□□□□ -0.25
CHD8-208	ENST00000555301	KCNE4	Q8WWG9	221 aa		13.52	□□□□□ -0.25
CHD8-208	ENST00000555301	C19orf60	Q96EN9	201 aa		13.52	□□□□□ -0.25
CHD8-208	ENST00000555301	YIPF2	Q9BWQ6	316 aa		13.52	□□□□□ -0.25
CHD8-208	ENST00000555301	GPR87	Q9BY21	358 aa		13.52	□□□□□ -0.25
CHD8-208	ENST00000555301	ZNF717	Q9BY31	904 aa	Predicted RBP	13.52	□□□□□ -0.25
CHD8-208	ENST00000555301	CCDC134	Q9H6E4	229 aa		13.52	□□□□□ -0.25
CHD8-208	ENST00000555301	DDX31	Q9H8H2	851 aa	Known RBP	13.52	□□□□□ -0.25
CHD8-208	ENST00000555301	C14orf105	Q9NVL8	296 aa		13.52	□□□□□ -0.25
CHD8-208	ENST00000555301	RIC8B	Q9NVN3	520 aa		13.52	□□□□□ -0.25
CHD8-208	ENST00000555301	HCN3	Q9P1Z3	774 aa		13.52	□□□□□ -0.25
CHD8-208	ENST00000555301	TRPC4	Q9UBN4	977 aa		13.52	□□□□□ -0.25
CHD8-208	ENST00000555301	KCND3	Q9UK17	655 aa		13.52	□□□□□ -0.25
CHD8-208	ENST00000555301	CROT	Q9UKG9	612 aa		13.52	□□□□□ -0.25
CHD8-208	ENST00000555301	NXT1	Q9UKK6	140 aa	Known RBP	13.52	□□□□□ -0.25
CHD8-208	ENST00000555301	PADI2	Q9Y2J8	665 aa		13.52	□□□□□ -0.25
CHD8-208	ENST00000555301	CCL27	Q9Y4X3	112 aa		13.52	□□□□□ -0.25
CHD8-208	ENST00000555301	SNRNP200	O75643	2136 aa	Known RBP	13.52	□□□□□ -0.25
CHD8-208	ENST00000555301	SPTBN2	O15020	2390 aa		13.51	□□□□□ -0.25
CHD8-208	ENST00000555301	IGLV3-12	A0A075B6K2	115 aa		13.51	□□□□□ -0.25
CHD8-208	ENST00000555301	ARHGAP10	A1A4S6	786 aa		13.51	□□□□□ -0.25
CHD8-208	ENST00000555301	TMEM8B	A6NDV4	472 aa		13.51	□□□□□ -0.25
CHD8-208	ENST00000555301	ZNF860	A6NHJ4	632 aa		13.51	□□□□□ -0.25
CHD8-208	ENST00000555301	TRPC5OS	A6NMA1	111 aa		13.51	□□□□□ -0.25
CHD8-208	ENST00000555301	HDAC3	O15379	428 aa		13.51	□□□□□ -0.25
CHD8-208	ENST00000555301	CAPNS1	P04632	268 aa		13.51	□□□□□ -0.25
CHD8-208	ENST00000555301	CERS1	P27544	350 aa		13.51	□□□□□ -0.25
CHD8-208	ENST00000555301	DLST	P36957	453 aa		13.51	□□□□□ -0.25
CHD8-208	ENST00000555301	MAT1A	Q00266	395 aa	Known RBP	13.51	□□□□□ -0.25
CHD8-208	ENST00000555301	GUCY1A3	Q02108	690 aa		13.51	□□□□□ -0.25
CHD8-208	ENST00000555301	CLN3	Q13286	438 aa		13.51	□□□□□ -0.25
CHD8-208	ENST00000555301	DNASE1L3	Q13609	305 aa		13.51	□□□□□ -0.25
CHD8-208	ENST00000555301	SLC9A5	Q14940	896 aa		13.51	□□□□□ -0.25
CHD8-208	ENST00000555301	NR6A1	Q15406	480 aa		13.51	□□□□□ -0.25
CHD8-208	ENST00000555301	TGIF1	Q15583	401 aa		13.51	□□□□□ -0.25
CHD8-208	ENST00000555301	XKR7	Q5GH72	579 aa		13.51	□□□□□ -0.25
CHD8-208	ENST00000555301	CYP20A1	Q6UW02	462 aa		13.51	□□□□□ -0.25

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