RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 ZAR1LA6NP61 321 aa16.83■□□□□ 0.28
SYNE3-202ENST00000553340 AP3D1O14617 1153 aa16.83■□□□□ 0.28
SYNE3-202ENST00000553340 SEMA3DO95025 777 aa16.83■□□□□ 0.28
SYNE3-202ENST00000553340 IFNA14P01570 189 aa16.83■□□□□ 0.28
SYNE3-202ENST00000553340 SCG5P05408 212 aa16.83■□□□□ 0.28
SYNE3-202ENST00000553340 PIPP12273 146 aaPredicted RBP16.83■□□□□ 0.28
SYNE3-202ENST00000553340 CBLP22681 906 aa16.83■□□□□ 0.28
SYNE3-202ENST00000553340 RPS19P39019 145 aaKnown RBP16.83■□□□□ 0.28
SYNE3-202ENST00000553340 CRISP1P54107 249 aa16.83■□□□□ 0.28
SYNE3-202ENST00000553340 HBA1P69905 142 aa16.83■□□□□ 0.28
SYNE3-202ENST00000553340 CYP27C1Q4G0S4 372 aa16.83■□□□□ 0.28
SYNE3-202ENST00000553340 SERPINA13PQ6UXR4 307 aa16.83■□□□□ 0.28
SYNE3-202ENST00000553340 TMPRSS11AQ6ZMR5 421 aa16.83■□□□□ 0.28
SYNE3-202ENST00000553340 GALNT6Q8NCL4 622 aa16.83■□□□□ 0.28
SYNE3-202ENST00000553340 ST6GAL2Q96JF0 529 aa16.83■□□□□ 0.28
SYNE3-202ENST00000553340 DEPDC7Q96QD5 511 aa16.83■□□□□ 0.28
SYNE3-202ENST00000553340 VPS35Q96QK1 796 aa16.83■□□□□ 0.28
SYNE3-202ENST00000553340 BHLHE41Q9C0J9 482 aaPredicted RBP16.83■□□□□ 0.28
SYNE3-202ENST00000553340 BRD9Q9H8M2 597 aa16.83■□□□□ 0.28
SYNE3-202ENST00000553340 A0A1W2PQ67 120 aa16.82■□□□□ 0.28
SYNE3-202ENST00000553340 ZNF821O75541 412 aaPredicted RBP16.82■□□□□ 0.28
SYNE3-202ENST00000553340 LHCGRP22888 699 aa16.82■□□□□ 0.28
SYNE3-202ENST00000553340 CHMP24386 653 aa16.82■□□□□ 0.28
SYNE3-202ENST00000553340 CNR2P34972 360 aa16.82■□□□□ 0.28
SYNE3-202ENST00000553340 LIMS1P48059 325 aa16.82■□□□□ 0.28
SYNE3-202ENST00000553340 RORCP51449 518 aa16.82■□□□□ 0.28
SYNE3-202ENST00000553340 RHAGQ02094 409 aa16.82■□□□□ 0.28
SYNE3-202ENST00000553340 CLPPQ16740 277 aaPredicted RBP16.82■□□□□ 0.28
SYNE3-202ENST00000553340 DGKKQ5KSL6 1271 aa16.82■□□□□ 0.28
SYNE3-202ENST00000553340 FRMPD2BQ6IN97 320 aa16.82■□□□□ 0.28
SYNE3-202ENST00000553340 RGMBQ6NW40 437 aa16.82■□□□□ 0.28
SYNE3-202ENST00000553340 GDPGP1Q6ZNW5 385 aa16.82■□□□□ 0.28
SYNE3-202ENST00000553340 PSD4Q8NDX1 1056 aa16.82■□□□□ 0.28
SYNE3-202ENST00000553340 FAM46DQ8NEK8 389 aa16.82■□□□□ 0.28
SYNE3-202ENST00000553340 OR4K1Q8NGD4 311 aa16.82■□□□□ 0.28
SYNE3-202ENST00000553340 GOT1L1Q8NHS2 421 aaPredicted RBP16.82■□□□□ 0.28
SYNE3-202ENST00000553340 GPR151Q8TDV0 419 aa16.82■□□□□ 0.28
SYNE3-202ENST00000553340 CXorf40BQ96DE9 158 aa16.82■□□□□ 0.28
SYNE3-202ENST00000553340 MED8Q96G25 268 aa16.82■□□□□ 0.28
SYNE3-202ENST00000553340 PHOX2BQ99453 314 aa16.82■□□□□ 0.28
SYNE3-202ENST00000553340 ELAC1Q9H777 363 aaKnown RBP16.82■□□□□ 0.28
SYNE3-202ENST00000553340 FTSJ1Q9UET6 329 aa16.82■□□□□ 0.28
SYNE3-202ENST00000553340 MUTYHQ9UIF7 546 aa16.82■□□□□ 0.28
SYNE3-202ENST00000553340 SCO2O43819 266 aa16.82■□□□□ 0.28
SYNE3-202ENST00000553340 CXCR2P25025 360 aa16.82■□□□□ 0.28
SYNE3-202ENST00000553340 TIA1P31483 386 aaKnown RBP eCLIP16.82■□□□□ 0.28
SYNE3-202ENST00000553340 RFX2P48378 723 aa16.82■□□□□ 0.28
SYNE3-202ENST00000553340 CDK6Q00534 326 aa16.82■□□□□ 0.28
SYNE3-202ENST00000553340 GANABQ14697 944 aaKnown RBP16.82■□□□□ 0.28
SYNE3-202ENST00000553340 CDK10Q15131 360 aa16.82■□□□□ 0.28
SYNE3-202ENST00000553340 ZDHHC20Q5W0Z9 365 aa16.82■□□□□ 0.28
SYNE3-202ENST00000553340 ADNP2Q6IQ32 1131 aa16.82■□□□□ 0.28
SYNE3-202ENST00000553340 TRIM40Q6P9F5 258 aa16.82■□□□□ 0.28
SYNE3-202ENST00000553340 KLHL17Q6TDP4 642 aa16.82■□□□□ 0.28
SYNE3-202ENST00000553340 METTL3Q86U44 580 aaKnown RBP16.82■□□□□ 0.28
SYNE3-202ENST00000553340 TRIM69Q86WT6 500 aa16.82■□□□□ 0.28
SYNE3-202ENST00000553340 TMEM38AQ9H6F2 299 aa16.82■□□□□ 0.28
SYNE3-202ENST00000553340 HHATLQ9HCP6 504 aa16.82■□□□□ 0.28
SYNE3-202ENST00000553340 TMPRSS11EQ9UL52 423 aa16.82■□□□□ 0.28
SYNE3-202ENST00000553340 V9GYH0 126 aa16.82■□□□□ 0.28
SYNE3-202ENST00000553340 MANSC4A6NHS7 340 aaPredicted RBP16.81■□□□□ 0.28
SYNE3-202ENST00000553340 FADS2P1A8MWK0 482 aa16.81■□□□□ 0.28
SYNE3-202ENST00000553340 PSMA1P25786 263 aaKnown RBP16.81■□□□□ 0.28
SYNE3-202ENST00000553340 POU1F1P28069 291 aa16.81■□□□□ 0.28
SYNE3-202ENST00000553340 CST5P28325 142 aaPredicted RBP16.81■□□□□ 0.28
SYNE3-202ENST00000553340 RUNX1T1Q06455 604 aa16.81■□□□□ 0.28
SYNE3-202ENST00000553340 NAE1Q13564 534 aa16.81■□□□□ 0.28
SYNE3-202ENST00000553340 ZNF385BQ569K4 471 aa16.81■□□□□ 0.28
SYNE3-202ENST00000553340 OXR1Q8N573 874 aa16.81■□□□□ 0.28
SYNE3-202ENST00000553340 BCL7CQ8WUZ0 217 aaPredicted RBP16.81■□□□□ 0.28
SYNE3-202ENST00000553340 ASZ1Q8WWH4 475 aa16.81■□□□□ 0.28
SYNE3-202ENST00000553340 ASB15Q8WXK1 588 aa16.81■□□□□ 0.28
SYNE3-202ENST00000553340 BARHL1Q9BZE3 327 aa16.81■□□□□ 0.28
SYNE3-202ENST00000553340 TBC1D14Q9P2M4 693 aa16.81■□□□□ 0.28
SYNE3-202ENST00000553340 ENPP4Q9Y6X5 453 aa16.81■□□□□ 0.28
SYNE3-202ENST00000553340 ALPK3Q96L96 1907 aa16.81■□□□□ 0.28
SYNE3-202ENST00000553340 PRAMEF33A0A0G2JMD5 474 aa16.81■□□□□ 0.28
SYNE3-202ENST00000553340 H3BM21 787 aa16.81■□□□□ 0.28
SYNE3-202ENST00000553340 BNIP3LO60238 219 aa16.81■□□□□ 0.28
SYNE3-202ENST00000553340 PRAMEF10O60809 474 aa16.81■□□□□ 0.28
SYNE3-202ENST00000553340 GUCY1B2O75343 617 aa16.81■□□□□ 0.28
SYNE3-202ENST00000553340 GASTP01350 101 aa16.81■□□□□ 0.28
SYNE3-202ENST00000553340 FOXD4Q12950 439 aaPredicted RBP16.81■□□□□ 0.28
SYNE3-202ENST00000553340 DOC2BQ14184 412 aa16.81■□□□□ 0.28
SYNE3-202ENST00000553340 CRB2Q5IJ48 1285 aa16.81■□□□□ 0.28
SYNE3-202ENST00000553340 AGTRAPQ6RW13 159 aa16.81■□□□□ 0.28
SYNE3-202ENST00000553340 GALNT12Q8IXK2 581 aa16.81■□□□□ 0.28
SYNE3-202ENST00000553340 TAGAPQ8N103 731 aa16.81■□□□□ 0.28
SYNE3-202ENST00000553340 OR7G3Q8NG95 312 aa16.81■□□□□ 0.28
SYNE3-202ENST00000553340 HUS1BQ8NHY5 278 aa16.81■□□□□ 0.28
SYNE3-202ENST00000553340 REEP4Q9H6H4 257 aa16.81■□□□□ 0.28
SYNE3-202ENST00000553340 C1GALT1Q9NS00 363 aa16.81■□□□□ 0.28
SYNE3-202ENST00000553340 ABCB8Q9NUT2 735 aa16.81■□□□□ 0.28
SYNE3-202ENST00000553340 ATP6V1HQ9UI12 483 aa16.81■□□□□ 0.28
SYNE3-202ENST00000553340 GABRQQ9UN88 632 aa16.81■□□□□ 0.28
SYNE3-202ENST00000553340 MTX2O75431 263 aa16.8■□□□□ 0.28
SYNE3-202ENST00000553340 C6orf47O95873 294 aa16.8■□□□□ 0.28
SYNE3-202ENST00000553340 GSTM1P09488 218 aa16.8■□□□□ 0.28
SYNE3-202ENST00000553340 RHCEP18577 417 aa16.8■□□□□ 0.28
SYNE3-202ENST00000553340 CCND3P30281 292 aaPredicted RBP16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 101.8 ms