RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	TROVE2	P10155	538 aa	Known RBP eCLIP	9.63	□□□□□ -0.87
CPSF7-221	ENST00000543545	HIST1H1T	P22492	207 aa	Predicted RBP	9.63	□□□□□ -0.87
CPSF7-221	ENST00000543545	ATP5A1	P25705	553 aa	Known RBP	9.63	□□□□□ -0.87
CPSF7-221	ENST00000543545	CERS1	P27544	350 aa		9.63	□□□□□ -0.87
CPSF7-221	ENST00000543545	HK2	P52789	917 aa		9.63	□□□□□ -0.87
CPSF7-221	ENST00000543545	SNRPN	P63162	240 aa	Known RBP	9.63	□□□□□ -0.87
CPSF7-221	ENST00000543545	SF3A3	Q12874	501 aa	Known RBP eCLIP	9.63	□□□□□ -0.87
CPSF7-221	ENST00000543545	SLAMF1	Q13291	335 aa		9.63	□□□□□ -0.87
CPSF7-221	ENST00000543545	NKAIN1	Q4KMZ8	207 aa		9.63	□□□□□ -0.87
CPSF7-221	ENST00000543545	ATP6AP1L	Q52LC2	224 aa		9.63	□□□□□ -0.87
CPSF7-221	ENST00000543545	CCNYL2	Q5T2Q4	361 aa		9.63	□□□□□ -0.87
CPSF7-221	ENST00000543545	FAM199X	Q6PEV8	388 aa	Predicted RBP	9.63	□□□□□ -0.87
CPSF7-221	ENST00000543545	IGF2-AS	Q6U949	168 aa		9.63	□□□□□ -0.87
CPSF7-221	ENST00000543545		Q6ZSR9	355 aa		9.63	□□□□□ -0.87
CPSF7-221	ENST00000543545	PRSS41	Q7RTY9	318 aa		9.63	□□□□□ -0.87
CPSF7-221	ENST00000543545	COMMD6	Q7Z4G1	85 aa		9.63	□□□□□ -0.87
CPSF7-221	ENST00000543545	NUDT13	Q86X67	352 aa		9.63	□□□□□ -0.87
CPSF7-221	ENST00000543545	PDSS2	Q86YH6	399 aa		9.63	□□□□□ -0.87
CPSF7-221	ENST00000543545	LRRC34	Q8IZ02	419 aa		9.63	□□□□□ -0.87
CPSF7-221	ENST00000543545	NLGN4X	Q8N0W4	816 aa		9.63	□□□□□ -0.87
CPSF7-221	ENST00000543545	METTL4	Q8N3J2	472 aa		9.63	□□□□□ -0.87
CPSF7-221	ENST00000543545	C1orf52	Q8N6N3	182 aa	Known RBP	9.63	□□□□□ -0.87
CPSF7-221	ENST00000543545	ACOT4	Q8N9L9	421 aa		9.63	□□□□□ -0.87
CPSF7-221	ENST00000543545	NLGN4Y	Q8NFZ3	816 aa	Predicted RBP	9.63	□□□□□ -0.87
CPSF7-221	ENST00000543545	ZDHHC19	Q8WVZ1	309 aa	Predicted RBP	9.63	□□□□□ -0.87
CPSF7-221	ENST00000543545	APIP	Q96GX9	242 aa		9.63	□□□□□ -0.87
CPSF7-221	ENST00000543545	SMIM10	Q96HG1	83 aa		9.63	□□□□□ -0.87
CPSF7-221	ENST00000543545	ZNF578	Q96N58	590 aa	Predicted RBP	9.63	□□□□□ -0.87
CPSF7-221	ENST00000543545	LRFN5	Q96NI6	719 aa		9.63	□□□□□ -0.87
CPSF7-221	ENST00000543545	GBP5	Q96PP8	586 aa		9.63	□□□□□ -0.87
CPSF7-221	ENST00000543545	SERINC2	Q96SA4	455 aa		9.63	□□□□□ -0.87
CPSF7-221	ENST00000543545	DPH2	Q9BQC3	489 aa	Predicted RBP	9.63	□□□□□ -0.87
CPSF7-221	ENST00000543545	CHST8	Q9H2A9	424 aa		9.63	□□□□□ -0.87
CPSF7-221	ENST00000543545	ASCL3	Q9NQ33	180 aa		9.63	□□□□□ -0.87
CPSF7-221	ENST00000543545	LHX9	Q9NQ69	397 aa		9.63	□□□□□ -0.87
CPSF7-221	ENST00000543545	PRDM7	Q9NQW5	492 aa		9.63	□□□□□ -0.87
CPSF7-221	ENST00000543545	FGFR1OP2	Q9NVK5	253 aa		9.63	□□□□□ -0.87
CPSF7-221	ENST00000543545	C1orf109	Q9NX04	203 aa		9.63	□□□□□ -0.87
CPSF7-221	ENST00000543545	FAM53C	Q9NYF3	392 aa		9.63	□□□□□ -0.87
CPSF7-221	ENST00000543545	FBXW2	Q9UKT8	454 aa		9.63	□□□□□ -0.87
CPSF7-221	ENST00000543545	TMEM184B	Q9Y519	407 aa	Predicted RBP	9.63	□□□□□ -0.87
CPSF7-221	ENST00000543545	USH1C	Q9Y6N9	552 aa		9.63	□□□□□ -0.87
CPSF7-221	ENST00000543545	SPACA6	W5XKT8	324 aa		9.63	□□□□□ -0.87
CPSF7-221	ENST00000543545	GOLGA8Q	A0A0J9YX86	632 aa		9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	GNG14	A0A1W2PPG7	69 aa		9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	GOLGA8O	A6NCC3	632 aa		9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	C4orf51	C9J302	202 aa		9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	GOLGA8N	F8WBI6	632 aa		9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	CHST10	O43529	356 aa		9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	EED	O75530	441 aa	Known RBP	9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	DLGAP3	O95886	979 aa		9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	JUN	P05412	331 aa	Known RBP	9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	RORA	P35398	523 aa		9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	BSG	P35613	385 aa		9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	GCGR	P47871	477 aa		9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	MAPK12	P53778	367 aa		9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	AQP5	P55064	265 aa		9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	RPL38	P63173	70 aa	Known RBP	9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	OCA2	Q04671	838 aa		9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	TBL3	Q12788	808 aa	Known RBP	9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	RUNX2	Q13950	521 aa		9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	DSG2	Q14126	1118 aa		9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	SYT16	Q17RD7	645 aa		9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	TBC1D25	Q3MII6	688 aa		9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	SPIN4	Q56A73	249 aa		9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	MFSD4B	Q5TF39	518 aa		9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	VWA5B1	Q5TIE3	1220 aa		9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	ACAD11	Q709F0	780 aa		9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	ERMP1	Q7Z2K6	904 aa		9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	TIPARP	Q7Z3E1	657 aa	Known RBP	9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	PRSS58	Q8IYP2	241 aa		9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	CACNA2D3	Q8IZS8	1091 aa		9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	DSEL	Q8IZU8	1212 aa		9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	ARHGEF39	Q8N4T4	335 aa		9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	IL22RA1	Q8N6P7	574 aa		9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	EFCAB3	Q8N7B9	438 aa		9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	AMER3	Q8N944	861 aa		9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	FNDC5	Q8NAU1	212 aa		9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	OR5T3	Q8NGG3	340 aa		9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	OR2T11	Q8NH01	316 aa		9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	CDC26	Q8NHZ8	85 aa		9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	CHTF18	Q8WVB6	975 aa		9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	FGF11	Q92914	225 aa		9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	CHMP6	Q96FZ7	201 aa		9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	NAF1	Q96HR8	494 aa	Known RBP	9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	C3orf30	Q96M34	536 aa		9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	EBPL	Q9BY08	206 aa		9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	TRIM55	Q9BYV6	548 aa		9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	FAM107B	Q9H098	131 aa		9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	CCDC134	Q9H6E4	229 aa		9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	WDR55	Q9H6Y2	383 aa	Predicted RBP	9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	AKTIP	Q9H8T0	292 aa		9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	AKIRIN1	Q9H9L7	192 aa	Predicted RBP	9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	MEAF6	Q9HAF1	191 aa		9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	NPHS2	Q9NP85	383 aa		9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	GIMAP2	Q9UG22	337 aa		9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	DCTN4	Q9UJW0	460 aa		9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	POLR3H	Q9Y535	204 aa	Predicted RBP	9.62	□□□□□ -0.87
CPSF7-221	ENST00000543545	MED19	A0JLT2	244 aa	Predicted RBP	9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	GMNC	A6NCL1	334 aa		9.61	□□□□□ -0.87

Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms