RNA–Protein interactions for RNA: ENST00000541578.5

SNHG1-217, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 3 BASIC

Gene SNHG1, Length 588 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-217ENST00000541578 HEXBP07686 556 aa3.88□□□□□ -1.79
SNHG1-217ENST00000541578 DAOP14920 347 aa3.88□□□□□ -1.79
SNHG1-217ENST00000541578 UGT1A6P19224 532 aa3.88□□□□□ -1.79
SNHG1-217ENST00000541578 MT3P25713 68 aa3.88□□□□□ -1.79
SNHG1-217ENST00000541578 CSTF2P33240 577 aaKnown RBP eCLIP3.88□□□□□ -1.79
SNHG1-217ENST00000541578 GPC3P51654 580 aa3.88□□□□□ -1.79
SNHG1-217ENST00000541578 VAMP7P51809 220 aa3.88□□□□□ -1.79
SNHG1-217ENST00000541578 DVL1P1P54792 670 aaPredicted RBP3.88□□□□□ -1.79
SNHG1-217ENST00000541578 ADARP55265 1226 aaKnown RBP3.88□□□□□ -1.79
SNHG1-217ENST00000541578 IRX4P78413 519 aa3.88□□□□□ -1.79
SNHG1-217ENST00000541578 HTD2P86397 168 aa3.88□□□□□ -1.79
SNHG1-217ENST00000541578 POU3F1Q03052 451 aaPredicted RBP3.88□□□□□ -1.79
SNHG1-217ENST00000541578 SLC3A1Q07837 685 aa3.88□□□□□ -1.79
SNHG1-217ENST00000541578 RASGEF1BQ0VAM2 473 aa3.88□□□□□ -1.79
SNHG1-217ENST00000541578 TRAP1Q12931 704 aaKnown RBP3.88□□□□□ -1.79
SNHG1-217ENST00000541578 GAMTQ14353 236 aa3.88□□□□□ -1.79
SNHG1-217ENST00000541578 TAF7Q15545 349 aaPredicted RBP3.88□□□□□ -1.79
SNHG1-217ENST00000541578 PHLDA2Q53GA4 152 aa3.88□□□□□ -1.79
SNHG1-217ENST00000541578 PDSS1Q5T2R2 415 aa3.88□□□□□ -1.79
SNHG1-217ENST00000541578 PM20D1Q6GTS8 502 aa3.88□□□□□ -1.79
SNHG1-217ENST00000541578 FAM166AQ6J272 317 aa3.88□□□□□ -1.79
SNHG1-217ENST00000541578 PRSS55Q6UWB4 352 aaPredicted RBP3.88□□□□□ -1.79
SNHG1-217ENST00000541578 NHLRC1Q6VVB1 395 aa3.88□□□□□ -1.79
SNHG1-217ENST00000541578 B3GLCTQ6Y288 498 aa3.88□□□□□ -1.79
SNHG1-217ENST00000541578 TAF8Q7Z7C8 310 aa3.88□□□□□ -1.79
SNHG1-217ENST00000541578 APCDD1Q8J025 514 aa3.88□□□□□ -1.79
SNHG1-217ENST00000541578 ZNF444Q8N0Y2 327 aaPredicted RBP3.88□□□□□ -1.79
SNHG1-217ENST00000541578 BMPERQ8N8U9 685 aa3.88□□□□□ -1.79
SNHG1-217ENST00000541578 CNNM3Q8NE01 707 aa3.88□□□□□ -1.79
SNHG1-217ENST00000541578 LILRB1Q8NHL6 650 aaPredicted RBP3.88□□□□□ -1.79
SNHG1-217ENST00000541578 METTL21AQ8WXB1 218 aa3.88□□□□□ -1.79
SNHG1-217ENST00000541578 DNASE2BQ8WZ79 361 aa3.88□□□□□ -1.79
SNHG1-217ENST00000541578 PIGBQ92521 554 aa3.88□□□□□ -1.79
SNHG1-217ENST00000541578 SYAP1Q96A49 352 aaPredicted RBP3.88□□□□□ -1.79
SNHG1-217ENST00000541578 BICD1Q96G01 975 aa3.88□□□□□ -1.79
SNHG1-217ENST00000541578 IGSF21Q96ID5 467 aa3.88□□□□□ -1.79
SNHG1-217ENST00000541578 ADGRG7Q96K78 797 aa3.88□□□□□ -1.79
SNHG1-217ENST00000541578 MYCBPQ99417 103 aaPredicted RBP3.88□□□□□ -1.79
SNHG1-217ENST00000541578 DDX50Q9BQ39 737 aaKnown RBP3.88□□□□□ -1.79
SNHG1-217ENST00000541578 RTP3Q9BQQ7 232 aa3.88□□□□□ -1.79
SNHG1-217ENST00000541578 POLR3CQ9BUI4 534 aaPredicted RBP3.88□□□□□ -1.79
SNHG1-217ENST00000541578 MTMR12Q9C0I1 747 aa3.88□□□□□ -1.79
SNHG1-217ENST00000541578 SDCBP2Q9H190 292 aa3.88□□□□□ -1.79
SNHG1-217ENST00000541578 ACTL8Q9H568 366 aa3.88□□□□□ -1.79
SNHG1-217ENST00000541578 ZNF556Q9HAH1 456 aa3.88□□□□□ -1.79
SNHG1-217ENST00000541578 UPF2Q9HAU5 1272 aaKnown RBP3.88□□□□□ -1.79
SNHG1-217ENST00000541578 TCF7L2Q9NQB0 619 aa3.88□□□□□ -1.79
SNHG1-217ENST00000541578 GPR173Q9NS66 373 aa3.88□□□□□ -1.79
SNHG1-217ENST00000541578 FAM207AQ9NSI2 230 aaPredicted RBP3.88□□□□□ -1.79
SNHG1-217ENST00000541578 TXLNGQ9NUQ3 528 aa3.88□□□□□ -1.79
SNHG1-217ENST00000541578 TAS2R3Q9NYW6 316 aa3.88□□□□□ -1.79
SNHG1-217ENST00000541578 SPASTQ9UBP0 616 aa3.88□□□□□ -1.79
SNHG1-217ENST00000541578 ZDHHC2Q9UIJ5 367 aa3.88□□□□□ -1.79
SNHG1-217ENST00000541578 NOCTQ9UK39 431 aaKnown RBP3.88□□□□□ -1.79
SNHG1-217ENST00000541578 KCNK6Q9Y257 313 aa3.88□□□□□ -1.79
SNHG1-217ENST00000541578 NCKAP1Q9Y2A7 1128 aa3.88□□□□□ -1.79
SNHG1-217ENST00000541578 DLGAP4Q9Y2H0 992 aa3.88□□□□□ -1.79
SNHG1-217ENST00000541578 ZNF510Q9Y2H8 683 aa3.88□□□□□ -1.79
SNHG1-217ENST00000541578 NFAT5O94916 1531 aa3.88□□□□□ -1.79
SNHG1-217ENST00000541578 ATP8B3O60423 1300 aa3.88□□□□□ -1.79
SNHG1-217ENST00000541578 ZNF831Q5JPB2 1677 aa3.87□□□□□ -1.79
SNHG1-217ENST00000541578 RGPD2P0DJD1 1756 aa3.87□□□□□ -1.79
SNHG1-217ENST00000541578 A0A0B4J203 849 aa3.87□□□□□ -1.79
SNHG1-217ENST00000541578 TEX13DA0A0J9YY54 714 aaPredicted RBP3.87□□□□□ -1.79
SNHG1-217ENST00000541578 C2orf92A0A1B0GVN3 265 aa3.87□□□□□ -1.79
SNHG1-217ENST00000541578 MAGEB16A2A368 324 aa3.87□□□□□ -1.79
SNHG1-217ENST00000541578 RGSL1A5PLK6 1076 aa3.87□□□□□ -1.79
SNHG1-217ENST00000541578 CASTOR2A6NHX0 329 aa3.87□□□□□ -1.79
SNHG1-217ENST00000541578 C2orf81A6NN90 581 aa3.87□□□□□ -1.79
SNHG1-217ENST00000541578 SRRM3A6NNA2 597 aaPredicted RBP3.87□□□□□ -1.79
SNHG1-217ENST00000541578 E5RGE8 158 aa3.87□□□□□ -1.79
SNHG1-217ENST00000541578 SCO2O43819 266 aa3.87□□□□□ -1.79
SNHG1-217ENST00000541578 WISP2O76076 250 aa3.87□□□□□ -1.79
SNHG1-217ENST00000541578 CAVIN2O95810 425 aa3.87□□□□□ -1.79
SNHG1-217ENST00000541578 CDH1P12830 882 aa3.87□□□□□ -1.79
SNHG1-217ENST00000541578 CAMLGP49069 296 aa3.87□□□□□ -1.79
SNHG1-217ENST00000541578 FMO5P49326 533 aa3.87□□□□□ -1.79
SNHG1-217ENST00000541578 HSD17B7P56937 341 aa3.87□□□□□ -1.79
SNHG1-217ENST00000541578 HUNKP57058 714 aa3.87□□□□□ -1.79
SNHG1-217ENST00000541578 KCNK10P57789 538 aa3.87□□□□□ -1.79
SNHG1-217ENST00000541578 SRP54P61011 504 aaKnown RBP3.87□□□□□ -1.79
SNHG1-217ENST00000541578 HMGN5P82970 282 aaKnown RBP3.87□□□□□ -1.79
SNHG1-217ENST00000541578 KLHL30Q0D2K2 578 aa3.87□□□□□ -1.79
SNHG1-217ENST00000541578 TRA2AQ13595 282 aaKnown RBP eCLIP3.87□□□□□ -1.792e-56■■■■□ 20.9
SNHG1-217ENST00000541578 KRT31Q15323 416 aa3.87□□□□□ -1.79
SNHG1-217ENST00000541578 SF3B4Q15427 424 aaKnown RBP eCLIP3.87□□□□□ -1.794e-47■■■■■ 46.5
SNHG1-217ENST00000541578 ARMCX4Q5H9R4 360 aa3.87□□□□□ -1.79
SNHG1-217ENST00000541578 CCNYL2Q5T2Q4 361 aa3.87□□□□□ -1.79
SNHG1-217ENST00000541578 PSRC1Q6PGN9 363 aaPredicted RBP3.87□□□□□ -1.79
SNHG1-217ENST00000541578 GFRALQ6UXV0 394 aa3.87□□□□□ -1.79
SNHG1-217ENST00000541578 MACC1Q6ZN28 852 aa3.87□□□□□ -1.79
SNHG1-217ENST00000541578 PIWIL4Q7Z3Z4 852 aaKnown RBP3.87□□□□□ -1.79
SNHG1-217ENST00000541578 RTN4RL2Q86UN3 420 aa3.87□□□□□ -1.79
SNHG1-217ENST00000541578 TMEM219Q86XT9 240 aa3.87□□□□□ -1.79
SNHG1-217ENST00000541578 AMER3Q8N944 861 aa3.87□□□□□ -1.79
SNHG1-217ENST00000541578 SMYD1Q8NB12 490 aa3.87□□□□□ -1.79
SNHG1-217ENST00000541578 ZBTB44Q8NCP5 570 aa3.87□□□□□ -1.79
SNHG1-217ENST00000541578 OR1J1Q8NGS3 322 aa3.87□□□□□ -1.79
SNHG1-217ENST00000541578 FGFBP3Q8TAT2 258 aa3.87□□□□□ -1.79
SNHG1-217ENST00000541578 LRRC8CQ8TDW0 803 aa3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms