RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 GTF2IRD2Q86UP8 949 aa16.18■□□□□ 0.18
USP28-208ENST00000540438 TMCO5AQ8N6Q1 288 aa16.18■□□□□ 0.18
USP28-208ENST00000540438 ANKRD53Q8N9V6 530 aa16.18■□□□□ 0.18
USP28-208ENST00000540438 OR8J2Q8NGG1 315 aa16.18■□□□□ 0.18
USP28-208ENST00000540438 ATL1Q8WXF7 558 aa16.18■□□□□ 0.18
USP28-208ENST00000540438 C7orf34Q96L11 122 aa16.18■□□□□ 0.18
USP28-208ENST00000540438 IL4I1Q96RQ9 567 aa16.18■□□□□ 0.18
USP28-208ENST00000540438 LRRK1Q38SD2 2015 aa16.18■□□□□ 0.18
USP28-208ENST00000540438 A0A1W2PRB8 838 aa16.18■□□□□ 0.18
USP28-208ENST00000540438 C1orf226A1L170 272 aa16.18■□□□□ 0.18
USP28-208ENST00000540438 LILRB5O75023 590 aa16.18■□□□□ 0.18
USP28-208ENST00000540438 TRPC1P48995 793 aa16.18■□□□□ 0.18
USP28-208ENST00000540438 PSRC1Q6PGN9 363 aaPredicted RBP16.18■□□□□ 0.18
USP28-208ENST00000540438 EIF3MQ7L2H7 374 aaKnown RBP16.18■□□□□ 0.18
USP28-208ENST00000540438 SYNPOQ8N3V7 929 aa16.18■□□□□ 0.18
USP28-208ENST00000540438 LEMD2Q8NC56 503 aa16.18■□□□□ 0.18
USP28-208ENST00000540438 ADAMTS16Q8TE57 1224 aa16.18■□□□□ 0.18
USP28-208ENST00000540438 SUSD6Q92537 303 aa16.18■□□□□ 0.18
USP28-208ENST00000540438 NRBF2Q96F24 287 aa16.18■□□□□ 0.18
USP28-208ENST00000540438 COQ10AQ96MF6 247 aa16.18■□□□□ 0.18
USP28-208ENST00000540438 RSPO3Q9BXY4 272 aaPredicted RBP16.18■□□□□ 0.18
USP28-208ENST00000540438 CXorf36Q9H7Y0 433 aa16.18■□□□□ 0.18
USP28-208ENST00000540438 KCNK12Q9HB15 430 aa16.18■□□□□ 0.18
USP28-208ENST00000540438 TM9SF3Q9HD45 589 aa16.18■□□□□ 0.18
USP28-208ENST00000540438 FAM120CQ9NX05 1096 aaKnown RBP16.18■□□□□ 0.18
USP28-208ENST00000540438 PTPRSQ13332 1948 aa16.17■□□□□ 0.18
USP28-208ENST00000540438 BCHEP06276 602 aa16.17■□□□□ 0.18
USP28-208ENST00000540438 PBX2P40425 430 aa16.17■□□□□ 0.18
USP28-208ENST00000540438 C11orf65Q8NCR3 313 aa16.17■□□□□ 0.18
USP28-208ENST00000540438 OR8D1Q8WZ84 308 aa16.17■□□□□ 0.18
USP28-208ENST00000540438 PLEKHA8Q96JA3 519 aa16.17■□□□□ 0.18
USP28-208ENST00000540438 QRSL1Q9H0R6 528 aaKnown RBP16.17■□□□□ 0.18
USP28-208ENST00000540438 TMEM245Q9H330 911 aa16.17■□□□□ 0.18
USP28-208ENST00000540438 REEP4Q9H6H4 257 aa16.17■□□□□ 0.18
USP28-208ENST00000540438 TEX10Q9NXF1 929 aaPredicted RBP16.17■□□□□ 0.18
USP28-208ENST00000540438 KIAA1671Q9BY89 1806 aa16.17■□□□□ 0.18
USP28-208ENST00000540438 OR1F1O43749 312 aa16.17■□□□□ 0.18
USP28-208ENST00000540438 LCMT2O60294 686 aaKnown RBP16.17■□□□□ 0.18
USP28-208ENST00000540438 APOL3O95236 402 aa16.17■□□□□ 0.18
USP28-208ENST00000540438 CPNE6O95741 557 aa16.17■□□□□ 0.18
USP28-208ENST00000540438 C7P10643 843 aa16.17■□□□□ 0.18
USP28-208ENST00000540438 IDUAP35475 653 aa16.17■□□□□ 0.18
USP28-208ENST00000540438 MVDP53602 400 aa16.17■□□□□ 0.18
USP28-208ENST00000540438 HTRA4P83105 476 aaPredicted RBP16.17■□□□□ 0.18
USP28-208ENST00000540438 PRAMEF14Q5SWL7 426 aa16.17■□□□□ 0.18
USP28-208ENST00000540438 PRAMEF13Q5VWM6 474 aa16.17■□□□□ 0.18
USP28-208ENST00000540438 ZDHHC20Q5W0Z9 365 aa16.17■□□□□ 0.18
USP28-208ENST00000540438 KDM4DQ6B0I6 523 aa16.17■□□□□ 0.18
USP28-208ENST00000540438 CCDC103Q8IW40 242 aa16.17■□□□□ 0.18
USP28-208ENST00000540438 ENTHD1Q8IYW4 607 aa16.17■□□□□ 0.18
USP28-208ENST00000540438 CXorf40AQ8TE69 158 aa16.17■□□□□ 0.18
USP28-208ENST00000540438 C11orf24Q96F05 449 aaPredicted RBP16.17■□□□□ 0.18
USP28-208ENST00000540438 ADPRHL2Q9NX46 363 aa16.17■□□□□ 0.18
USP28-208ENST00000540438 SCHIP1Q9P0W5 487 aaPredicted RBP16.17■□□□□ 0.18
USP28-208ENST00000540438 RPS6KA6Q9UK32 745 aa16.17■□□□□ 0.18
USP28-208ENST00000540438 PSME2Q9UL46 239 aa16.17■□□□□ 0.18
USP28-208ENST00000540438 HCN2Q9UL51 889 aa16.17■□□□□ 0.18
USP28-208ENST00000540438 CACNA1IQ9P0X4 2223 aa16.17■□□□□ 0.18
USP28-208ENST00000540438 PNMA8CA0A1B0GUJ8 204 aa16.16■□□□□ 0.18
USP28-208ENST00000540438 ZNF99A8MXY4 864 aaPredicted RBP16.16■□□□□ 0.18
USP28-208ENST00000540438 SLC16A5O15375 505 aa16.16■□□□□ 0.18
USP28-208ENST00000540438 WBP4O75554 376 aaKnown RBP16.16■□□□□ 0.18
USP28-208ENST00000540438 ERAL1O75616 437 aaKnown RBP16.16■□□□□ 0.18
USP28-208ENST00000540438 NADKO95544 446 aaPredicted RBP16.16■□□□□ 0.18
USP28-208ENST00000540438 FPR1P21462 350 aa16.16■□□□□ 0.18
USP28-208ENST00000540438 PCMT1P22061 227 aa16.16■□□□□ 0.18
USP28-208ENST00000540438 GSTM2P28161 218 aa16.16■□□□□ 0.18
USP28-208ENST00000540438 HNRNPA1L2Q32P51 320 aaKnown RBP16.16■□□□□ 0.18
USP28-208ENST00000540438 RBM48Q5RL73 367 aaKnown RBP16.16■□□□□ 0.18
USP28-208ENST00000540438 NXPE4Q6UWF7 544 aa16.16■□□□□ 0.18
USP28-208ENST00000540438 ADGRF3Q8IZF5 1079 aa16.16■□□□□ 0.18
USP28-208ENST00000540438 ABHD11Q8NFV4 315 aa16.16■□□□□ 0.18
USP28-208ENST00000540438 FKBP10Q96AY3 582 aa16.16■□□□□ 0.18
USP28-208ENST00000540438 C17orf62Q9BQA9 187 aa16.16■□□□□ 0.18
USP28-208ENST00000540438 CD93Q9NPY3 652 aa16.16■□□□□ 0.18
USP28-208ENST00000540438 TAAR2Q9P1P5 351 aa16.16■□□□□ 0.18
USP28-208ENST00000540438 SLC31A1O15431 190 aa16.16■□□□□ 0.18
USP28-208ENST00000540438 FURINP09958 794 aa16.16■□□□□ 0.18
USP28-208ENST00000540438 TIE1P35590 1138 aa16.16■□□□□ 0.18
USP28-208ENST00000540438 SPDYE7PQ495Y7 208 aa16.16■□□□□ 0.18
USP28-208ENST00000540438 PHF6Q8IWS0 365 aaKnown RBP eCLIP16.16■□□□□ 0.18
USP28-208ENST00000540438 LGI4Q8N135 537 aa16.16■□□□□ 0.18
USP28-208ENST00000540438 TIFAQ96CG3 184 aa16.16■□□□□ 0.18
USP28-208ENST00000540438 PLA2G2FQ9BZM2 168 aa16.16■□□□□ 0.18
USP28-208ENST00000540438 PLGRKTQ9HBL7 147 aa16.16■□□□□ 0.18
USP28-208ENST00000540438 C11orf16Q9NQ32 467 aa16.16■□□□□ 0.18
USP28-208ENST00000540438 ITM2CQ9NQX7 267 aa16.16■□□□□ 0.18
USP28-208ENST00000540438 WDFY4Q6ZS81 3184 aa16.16■□□□□ 0.18
USP28-208ENST00000540438 PLPP1O14494 284 aa16.16■□□□□ 0.18
USP28-208ENST00000540438 AP2A2O94973 939 aa16.16■□□□□ 0.18
USP28-208ENST00000540438 ADH1CP00326 375 aa16.16■□□□□ 0.18
USP28-208ENST00000540438 PRNPP04156 253 aa16.16■□□□□ 0.18
USP28-208ENST00000540438 STSP08842 583 aa16.16■□□□□ 0.18
USP28-208ENST00000540438 MANFP55145 182 aaKnown RBP16.16■□□□□ 0.18
USP28-208ENST00000540438 RPS3AP61247 264 aaKnown RBP16.16■□□□□ 0.18
USP28-208ENST00000540438 PPIGQ13427 754 aaKnown RBP eCLIP16.16■□□□□ 0.18
USP28-208ENST00000540438 MYBPC3Q14896 1274 aa16.16■□□□□ 0.18
USP28-208ENST00000540438 C9orf50Q5SZB4 431 aa16.16■□□□□ 0.18
USP28-208ENST00000540438 CEACAM20Q6UY09 585 aa16.16■□□□□ 0.18
USP28-208ENST00000540438 P3H2Q8IVL5 708 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms