RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 NAT8LQ8N9F0 302 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 HSH2DQ96JZ2 352 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 ORAI3Q9BRQ5 295 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 PARPBPQ9NWS1 579 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 PPM1HQ9ULR3 514 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 COQ4Q9Y3A0 265 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 BLOC1S5-TXNDC5H3BN57 136 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 NARSO43776 548 aaKnown RBP10.29□□□□□ -0.76
CLIP1-209ENST00000537178 RAD51DO75771 328 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 SLITRK5O94991 958 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 HLA-DQB2P05538 268 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 SNHG28P0DPA3 235 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 ATP1B2P14415 290 aaPredicted RBP10.29□□□□□ -0.76
CLIP1-209ENST00000537178 CHRNB2P17787 502 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 S1PR1P21453 382 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 MLLT6P55198 1093 aaPredicted RBP10.29□□□□□ -0.76
CLIP1-209ENST00000537178 GRIK2Q13002 908 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 GNMTQ14749 295 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 ARSIQ5FYB1 569 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 ARHGAP40Q5TG30 622 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 MLIPQ5VWP3 458 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 GDF6Q6KF10 455 aaPredicted RBP10.29□□□□□ -0.76
CLIP1-209ENST00000537178 KCTD18Q6PI47 426 aaPredicted RBP10.29□□□□□ -0.76
CLIP1-209ENST00000537178 PRSS55Q6UWB4 352 aaPredicted RBP10.29□□□□□ -0.76
CLIP1-209ENST00000537178 OR52B2Q96RD2 323 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 APOBEC3GQ9HC16 384 aaKnown RBP10.29□□□□□ -0.76
CLIP1-209ENST00000537178 ST6GALNAC1Q9NSC7 600 aaPredicted RBP10.29□□□□□ -0.76
CLIP1-209ENST00000537178 EMC3Q9P0I2 261 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 PIGBOS1A0A0B4J2F0 54 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 H7C417 338 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 KLF11O14901 512 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 CAPN5O15484 640 aaPredicted RBP10.29□□□□□ -0.76
CLIP1-209ENST00000537178 ABCB7O75027 752 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 RP2O75695 350 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 MT-ND2P03891 347 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 VIPR1P32241 457 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 PTGR1Q14914 329 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 ATXN7L3Q14CW9 347 aaPredicted RBP10.29□□□□□ -0.76
CLIP1-209ENST00000537178 QSER1Q2KHR3 1735 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 C2orf27AQ580R0 203 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 ZNF773Q6PK81 442 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 SYNPOQ8N3V7 929 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 MFSD8Q8NHS3 518 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 PHB2Q99623 299 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 OR51I1Q9H343 314 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 ACTL8Q9H568 366 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 ASB6Q9NWX5 421 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 CLCA1A8K7I4 914 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 J3QRK9 145 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 SLC19A2O60779 497 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 IL3P08700 152 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 EBLN1P0CF75 366 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 GKN3PP0CG01 181 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 UNGP13051 313 aaPredicted RBP10.29□□□□□ -0.76
CLIP1-209ENST00000537178 TUBG1P23258 451 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 GNRHRP30968 328 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 ZNF81P51508 661 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 PER3P56645 1201 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 TLE2Q04725 743 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 SH3PXD2AQ5TCZ1 1133 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 LYSMD3Q7Z3D4 306 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 VTCN1Q7Z7D3 282 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 CMASQ8NFW8 434 aaPredicted RBP10.29□□□□□ -0.76
CLIP1-209ENST00000537178 RHBDF1Q96CC6 855 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 FBXL8Q96CD0 374 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 KLHL15Q96M94 604 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 RDH12Q96NR8 316 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 MMP27Q9H306 513 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 RPF2Q9H7B2 306 aaKnown RBP10.29□□□□□ -0.76
CLIP1-209ENST00000537178 BRF2Q9HAW0 419 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 PREBQ9HCU5 417 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 ZNF226Q9NYT6 803 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 RIPK3Q9Y572 518 aa10.29□□□□□ -0.76
CLIP1-209ENST00000537178 H3BSA7 217 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 EIF1AYO14602 144 aaKnown RBP10.28□□□□□ -0.76
CLIP1-209ENST00000537178 DLX3O60479 287 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 RPS3P23396 243 aaKnown RBP eCLIP10.28□□□□□ -0.76
CLIP1-209ENST00000537178 UQCRC1P31930 480 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 MAGEA8P43361 318 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 ARRB1P49407 418 aaPredicted RBP10.28□□□□□ -0.76
CLIP1-209ENST00000537178 ZNF41P51814 821 aaPredicted RBP10.28□□□□□ -0.76
CLIP1-209ENST00000537178 PCBP2Q15366 365 aaKnown RBP eCLIP10.28□□□□□ -0.762e-8■■□□□ 11.9
CLIP1-209ENST00000537178 REEP3Q6NUK4 255 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 SLC2A7Q6PXP3 512 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 DCDC5Q6ZRR9 648 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 DBF4BQ8NFT6 615 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 TMEM125Q96AQ2 219 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 OTUB2Q96DC9 234 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 DMAC2Q9NW81 257 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 SIRPGQ9P1W8 387 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 PADI2Q9Y2J8 665 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 SNED1Q8TER0 1413 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 FAM159BA6NKW6 160 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 TRIM64CA6NLI5 447 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 SOX1O00570 391 aaPredicted RBP10.28□□□□□ -0.76
CLIP1-209ENST00000537178 TRAPPC6AO75865 159 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 GABBR2O75899 941 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 FAM163BP0C2L3 166 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 GLDCP23378 1020 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 SEMG2Q02383 582 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms