RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 SETDB1Q15047 1291 aa10□□□□□ -0.81
CD44-227ENST00000528086 NSDHLQ15738 373 aa10□□□□□ -0.81
CD44-227ENST00000528086 UAP1Q16222 522 aaPredicted RBP10□□□□□ -0.81
CD44-227ENST00000528086 XKR6Q5GH73 641 aa10□□□□□ -0.81
CD44-227ENST00000528086 ZNF468Q5VIY5 522 aaPredicted RBP10□□□□□ -0.81
CD44-227ENST00000528086 PAPD4Q6PIY7 484 aaKnown RBP10□□□□□ -0.81
CD44-227ENST00000528086 QSOX2Q6ZRP7 698 aa10□□□□□ -0.81
CD44-227ENST00000528086 RIPOR1Q6ZS17 1223 aa10□□□□□ -0.81
CD44-227ENST00000528086 RAPH1Q70E73 1250 aa10□□□□□ -0.81
CD44-227ENST00000528086 LRRC70Q7Z2Q7 622 aa10□□□□□ -0.81
CD44-227ENST00000528086 GSPT2Q8IYD1 628 aaKnown RBP10□□□□□ -0.81
CD44-227ENST00000528086 ZADH2Q8N4Q0 377 aa10□□□□□ -0.81
CD44-227ENST00000528086 SNX31Q8N9S9 440 aa10□□□□□ -0.81
CD44-227ENST00000528086 RHEBL1Q8TAI7 183 aa10□□□□□ -0.81
CD44-227ENST00000528086 DNAJB14Q8TBM8 379 aa10□□□□□ -0.81
CD44-227ENST00000528086 HAS2Q92819 552 aa10□□□□□ -0.81
CD44-227ENST00000528086 GAL3ST3Q96A11 431 aa10□□□□□ -0.81
CD44-227ENST00000528086 PTCD3Q96EY7 689 aaKnown RBP10□□□□□ -0.81
CD44-227ENST00000528086 TUBB6Q9BUF5 446 aa10□□□□□ -0.81
CD44-227ENST00000528086 SORBS1Q9BX66 1292 aaKnown RBP10□□□□□ -0.81
CD44-227ENST00000528086 ZNF717Q9BY31 904 aaPredicted RBP10□□□□□ -0.81
CD44-227ENST00000528086 ZBTB26Q9HCK0 441 aa10□□□□□ -0.81
CD44-227ENST00000528086 SLAMF7Q9NQ25 335 aa10□□□□□ -0.81
CD44-227ENST00000528086 DIDO1Q9BTC0 2240 aaKnown RBP10□□□□□ -0.81
CD44-227ENST00000528086 CROCCQ5TZA2 2017 aa9.99□□□□□ -0.81
CD44-227ENST00000528086 A0A087X1B8 175 aa9.99□□□□□ -0.81
CD44-227ENST00000528086 PABPN1LA6NDY0 278 aaKnown RBP9.99□□□□□ -0.81
CD44-227ENST00000528086 TMEM200CA6NKL6 621 aa9.99□□□□□ -0.81
CD44-227ENST00000528086 FOXO6A8MYZ6 492 aa9.99□□□□□ -0.81
CD44-227ENST00000528086 SUPT3HB4E1H0 165 aa9.99□□□□□ -0.81
CD44-227ENST00000528086 K7EPI3 171 aa9.99□□□□□ -0.81
CD44-227ENST00000528086 PPP6CO00743 305 aa9.99□□□□□ -0.81
CD44-227ENST00000528086 OR7A17O14581 309 aa9.99□□□□□ -0.81
CD44-227ENST00000528086 PCDH17O14917 1159 aa9.99□□□□□ -0.81
CD44-227ENST00000528086 ERI3O43414 337 aaKnown RBP9.99□□□□□ -0.81
CD44-227ENST00000528086 SH3BGRLO75368 114 aa9.99□□□□□ -0.81
CD44-227ENST00000528086 SUPT3HO75486 399 aa9.99□□□□□ -0.81
CD44-227ENST00000528086 ETHE1O95571 254 aa9.99□□□□□ -0.81
CD44-227ENST00000528086 IL10P22301 178 aa9.99□□□□□ -0.81
CD44-227ENST00000528086 TSFMP43897 325 aaKnown RBP9.99□□□□□ -0.81
CD44-227ENST00000528086 PLA2G16P53816 162 aa9.99□□□□□ -0.81
CD44-227ENST00000528086 ZNF169Q14929 603 aaPredicted RBP9.99□□□□□ -0.81
CD44-227ENST00000528086 ACAP2Q15057 778 aa9.99□□□□□ -0.81
CD44-227ENST00000528086 PCBP2Q15366 365 aaKnown RBP eCLIP9.99□□□□□ -0.81
CD44-227ENST00000528086 NR6A1Q15406 480 aa9.99□□□□□ -0.81
CD44-227ENST00000528086 PFKFB4Q16877 469 aa9.99□□□□□ -0.81
CD44-227ENST00000528086 EIF2S3LQ2VIR3 472 aaKnown RBP9.99□□□□□ -0.81
CD44-227ENST00000528086 MFSD4BQ5TF39 518 aa9.99□□□□□ -0.81
CD44-227ENST00000528086 RPS27LQ71UM5 84 aaKnown RBP9.99□□□□□ -0.81
CD44-227ENST00000528086 ABHD13Q7L211 337 aa9.99□□□□□ -0.81
CD44-227ENST00000528086 TBC1D1Q86TI0 1168 aaPredicted RBP9.99□□□□□ -0.81
CD44-227ENST00000528086 CRLF3Q8IUI8 442 aa9.99□□□□□ -0.81
CD44-227ENST00000528086 IQCKQ8N0W5 287 aa9.99□□□□□ -0.81
CD44-227ENST00000528086 TEX9Q8N6V9 391 aa9.99□□□□□ -0.81
CD44-227ENST00000528086 MNS1Q8NEH6 495 aa9.99□□□□□ -0.81
CD44-227ENST00000528086 OR2L5Q8NG80 312 aa9.99□□□□□ -0.81
CD44-227ENST00000528086 OR7G3Q8NG95 312 aa9.99□□□□□ -0.81
CD44-227ENST00000528086 KIF18AQ8NI77 898 aa9.99□□□□□ -0.81
CD44-227ENST00000528086 ELP5Q8TE02 316 aa9.99□□□□□ -0.81
CD44-227ENST00000528086 GRHL3Q8TE85 626 aa9.99□□□□□ -0.81
CD44-227ENST00000528086 MZB1Q8WU39 189 aa9.99□□□□□ -0.81
CD44-227ENST00000528086 NSUN5Q96P11 429 aaKnown RBP9.99□□□□□ -0.81
CD44-227ENST00000528086 PSMG3-AS1Q96PY0 264 aa9.99□□□□□ -0.81
CD44-227ENST00000528086 HES7Q9BYE0 225 aa9.99□□□□□ -0.81
CD44-227ENST00000528086 PITHD1Q9GZP4 211 aaPredicted RBP9.99□□□□□ -0.81
CD44-227ENST00000528086 L2HGDHQ9H9P8 463 aa9.99□□□□□ -0.81
CD44-227ENST00000528086 MMP25Q9NPA2 562 aa9.99□□□□□ -0.81
CD44-227ENST00000528086 MTRF1LQ9UGC7 380 aaKnown RBP9.99□□□□□ -0.81
CD44-227ENST00000528086 DOPEY1Q5JWR5 2465 aa9.99□□□□□ -0.81
CD44-227ENST00000528086 MYOCOSA0A1B0GUC4 107 aa9.98□□□□□ -0.81
CD44-227ENST00000528086 WASHC1A8K0Z3 465 aa9.98□□□□□ -0.81
CD44-227ENST00000528086 TRIM49D1C9J1S8 452 aa9.98□□□□□ -0.81
CD44-227ENST00000528086 POC1B-GALNT4F8VUJ3 575 aa9.98□□□□□ -0.81
CD44-227ENST00000528086 CLGNO14967 610 aa9.98□□□□□ -0.81
CD44-227ENST00000528086 RIPK2O43353 540 aa9.98□□□□□ -0.81
CD44-227ENST00000528086 PRKNO60260 465 aaPredicted RBP9.98□□□□□ -0.81
CD44-227ENST00000528086 H2AFYO75367 372 aaKnown RBP9.98□□□□□ -0.81
CD44-227ENST00000528086 TGFB1P01137 390 aa9.98□□□□□ -0.81
CD44-227ENST00000528086 TUBB4AP04350 444 aa9.98□□□□□ -0.81
CD44-227ENST00000528086 RHOXF2BP0C7M4 288 aa9.98□□□□□ -0.81
CD44-227ENST00000528086 RNH1P13489 461 aaKnown RBP9.98□□□□□ -0.81
CD44-227ENST00000528086 ATP5A1P25705 553 aaKnown RBP9.98□□□□□ -0.81
CD44-227ENST00000528086 TYK2P29597 1187 aa9.98□□□□□ -0.81
CD44-227ENST00000528086 MSH2P43246 934 aa9.98□□□□□ -0.81
CD44-227ENST00000528086 SERPINB8P50452 374 aa9.98□□□□□ -0.81
CD44-227ENST00000528086 TDGF1P3P51864 188 aa9.98□□□□□ -0.81
CD44-227ENST00000528086 LIM2P55344 173 aa9.98□□□□□ -0.81
CD44-227ENST00000528086 OR4D2P58180 307 aa9.98□□□□□ -0.81
CD44-227ENST00000528086 IRF8Q02556 426 aa9.98□□□□□ -0.81
CD44-227ENST00000528086 BTBD16Q32M84 506 aa9.98□□□□□ -0.81
CD44-227ENST00000528086 SH2D5Q6ZV89 423 aa9.98□□□□□ -0.81
CD44-227ENST00000528086 GOLGA7Q7Z5G4 137 aa9.98□□□□□ -0.81
CD44-227ENST00000528086 BEST3Q8N1M1 668 aa9.98□□□□□ -0.81
CD44-227ENST00000528086 ARMC10Q8N2F6 343 aa9.98□□□□□ -0.81
CD44-227ENST00000528086 APCDD1LQ8NCL9 501 aa9.98□□□□□ -0.81
CD44-227ENST00000528086 MDS2Q8NDY4 140 aa9.98□□□□□ -0.81
CD44-227ENST00000528086 OR52B6Q8NGF0 335 aa9.98□□□□□ -0.81
CD44-227ENST00000528086 HUS1BQ8NHY5 278 aa9.98□□□□□ -0.81
CD44-227ENST00000528086 M1APQ8TC57 530 aa9.98□□□□□ -0.81
CD44-227ENST00000528086 METTL21AQ8WXB1 218 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms