RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 HAT1O14929 419 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 YKT6O15498 198 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 SLC7A4O43246 635 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 C22orf31O95567 290 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 ACSL3O95573 720 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 YEATS4O95619 227 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 NPPAP01160 153 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 IGHEP01854 428 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 MT-ND3P03897 115 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 ABCB1P08183 1280 aaPredicted RBP3.3□□□□□ -1.88
CD44-217ENST00000525348 NR2F1P10589 423 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 KRT20P35900 424 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 NNMTP40261 264 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 ATP5OP48047 213 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 LHX1P48742 406 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 CCR3P51677 355 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 VAMP7P51809 220 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 ZNF75DP51815 510 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 ARHGDIBP52566 201 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 ARFIP1P53367 373 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 POLR2LP62875 67 aaKnown RBP3.3□□□□□ -1.88
CD44-217ENST00000525348 CYCSP99999 105 aaKnown RBP3.3□□□□□ -1.88
CD44-217ENST00000525348 AP1B1Q10567 949 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 PRKG2Q13237 762 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 MSLNQ13421 630 aaPredicted RBP3.3□□□□□ -1.88
CD44-217ENST00000525348 CUL3Q13618 768 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 GNA13Q14344 377 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 FASTKD3Q14CZ7 662 aaKnown RBP3.3□□□□□ -1.88
CD44-217ENST00000525348 PPA1Q15181 289 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 MOGAT2Q3SYC2 334 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 ANKDD1AQ495B1 522 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 AARDQ4LEZ3 155 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 KRBOX4Q5JUW0 171 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 HECTD3Q5T447 861 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 LYSMD4Q5XG99 296 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 TWF2Q6IBS0 349 aaKnown RBP3.3□□□□□ -1.88
CD44-217ENST00000525348 PPP1R42Q7Z4L9 355 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 KIAA1328Q86T90 577 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 FAM9CQ8IZT9 166 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 ZNF619Q8N2I2 560 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 RNF10Q8N5U6 811 aaKnown RBP3.3□□□□□ -1.88
CD44-217ENST00000525348 SLC37A3Q8NCC5 494 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 BBOF1Q8ND07 529 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 OR4K1Q8NGD4 311 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 PHOSPHO2Q8TCD6 241 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 ATP6V0A1Q93050 837 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 C16orf45Q96MC5 204 aaPredicted RBP3.3□□□□□ -1.88
CD44-217ENST00000525348 TCEANC2Q96MN5 208 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 TTC25Q96NG3 672 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 APOL6Q9BWW8 343 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 CLSTN2Q9H4D0 955 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 EHD1Q9H4M9 534 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 ZWILCHQ9H900 591 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 CRLF2Q9HC73 371 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 CFL2Q9Y281 166 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 MOB4Q9Y3A3 225 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 MTF2Q9Y483 593 aaPredicted RBP3.3□□□□□ -1.88
CD44-217ENST00000525348 TRPV2Q9Y5S1 764 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 CSNK1G3Q9Y6M4 447 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 FAM169AQ9Y6X4 670 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 VIRMAQ69YN4 1812 aaKnown RBP3.3□□□□□ -1.88
CD44-217ENST00000525348 ZNF318Q5VUA4 2279 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 LTBP4Q8N2S1 1624 aa3.3□□□□□ -1.88
CD44-217ENST00000525348 ABCA7Q8IZY2 2146 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 CD109Q6YHK3 1445 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 ROCK2O75116 1388 aaKnown RBP3.29□□□□□ -1.88
CD44-217ENST00000525348 RPAP1Q9BWH6 1393 aaPredicted RBP3.29□□□□□ -1.88
CD44-217ENST00000525348 TNIKQ9UKE5 1360 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 A0A1B0GUA9 196 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 HTR3EA5X5Y0 456 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 CASTOR2A6NHX0 329 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 GOLGA6L10A6NI86 522 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 TSPY2A6NKD2 308 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 AP3B1O00203 1094 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 O00370 1275 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 SRSF10O75494 262 aaKnown RBP3.29□□□□□ -1.88
CD44-217ENST00000525348 SLITRK3O94933 977 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 OR5F1O95221 314 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 BAG2O95816 211 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 CSN3P07498 182 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 TSPY3P0CV98 308 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 TSPY8P0CW00 308 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 IRF2P14316 349 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 ZNF3P17036 446 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 AZGP1P25311 298 aaKnown RBP3.29□□□□□ -1.88
CD44-217ENST00000525348 SOX6P35712 828 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 SOX3P41225 446 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 CLCN4P51793 760 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 AP3M2P53677 418 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 CLDN15P56746 228 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 MYL6P60660 151 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 TSPY1Q01534 308 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 PLOD1Q02809 727 aaPredicted RBP3.29□□□□□ -1.88
CD44-217ENST00000525348 ELAVL2Q12926 359 aaKnown RBP3.29□□□□□ -1.88
CD44-217ENST00000525348 RAPSNQ13702 412 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 RFTN1Q14699 578 aaPredicted RBP3.29□□□□□ -1.88
CD44-217ENST00000525348 PHKG1Q16816 387 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 USH1GQ495M9 461 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 KIF6Q6ZMV9 814 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 P2RY8Q86VZ1 359 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms