RNA–Protein interactions for RNA: ENST00000507004.1

HMGCS1-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 950 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-203ENST00000507004 C1QL3Q5VWW1 255 aa13.52□□□□□ -0.25
HMGCS1-203ENST00000507004 C3orf62Q6ZUJ4 267 aa13.52□□□□□ -0.25
HMGCS1-203ENST00000507004 CEP97Q8IW35 865 aa13.52□□□□□ -0.25
HMGCS1-203ENST00000507004 ZNF595Q8IYB9 648 aa13.52□□□□□ -0.25
HMGCS1-203ENST00000507004 CYP4X1Q8N118 509 aa13.52□□□□□ -0.25
HMGCS1-203ENST00000507004 CA13Q8N1Q1 262 aa13.52□□□□□ -0.25
HMGCS1-203ENST00000507004 ZNF808Q8N4W9 903 aaPredicted RBP13.52□□□□□ -0.25
HMGCS1-203ENST00000507004 STAG3L4Q8TBR4 150 aa13.52□□□□□ -0.25
HMGCS1-203ENST00000507004 ANKRD49Q8WVL7 239 aa13.52□□□□□ -0.25
HMGCS1-203ENST00000507004 WDR34Q96EX3 536 aa13.52□□□□□ -0.25
HMGCS1-203ENST00000507004 PTCD3Q96EY7 689 aaKnown RBP13.52□□□□□ -0.25
HMGCS1-203ENST00000507004 MAGED4Q96JG8 741 aa13.52□□□□□ -0.25
HMGCS1-203ENST00000507004 GPR137Q96N19 417 aa13.52□□□□□ -0.25
HMGCS1-203ENST00000507004 DEFB126Q9BYW3 111 aa13.52□□□□□ -0.25
HMGCS1-203ENST00000507004 CDCP1Q9H5V8 836 aa13.52□□□□□ -0.25
HMGCS1-203ENST00000507004 COPS7BQ9H9Q2 264 aaPredicted RBP13.52□□□□□ -0.25
HMGCS1-203ENST00000507004 RYDENQ9NUL5 291 aaKnown RBP13.52□□□□□ -0.25
HMGCS1-203ENST00000507004 UNC79Q9P2D8 2635 aa13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 TCRBV9S1A1TA0A576 114 aa13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 LRIT2A6NDA9 550 aa13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 OR2W5A6NFC9 320 aa13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 FAM159BA6NKW6 160 aa13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 ERI3O43414 337 aaKnown RBP13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 ZG16O60844 167 aa13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 WISP3O95389 354 aaPredicted RBP13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 CCDC166P0CW27 439 aa13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 AGAP20933 346 aa13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 SSTR1P30872 391 aa13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 HNF4AP41235 474 aa13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 HLCSP50747 726 aa13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 SMSP52788 366 aa13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 PGGT1BP53609 377 aa13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 MTTPP55157 894 aa13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 MLF1P58340 268 aa13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 RAB10P61026 200 aa13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 BTN3A2P78410 334 aa13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 SRSF11Q05519 484 aaKnown RBP13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 ZNF460Q14592 562 aa13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 NAA30Q147X3 362 aaPredicted RBP13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 EFTUD2Q15029 972 aaKnown RBP eCLIP13.51□□□□□ -0.255e-14■■■□□ 18.9
HMGCS1-203ENST00000507004 ZKSCAN8Q15776 578 aaPredicted RBP13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 TBCCQ15814 346 aa13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 PDK4Q16654 411 aa13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 ADPRMQ3LIE5 342 aa13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 FCRLBQ6BAA4 426 aa13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 HIST2H2BCQ6DN03 193 aa13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 XKRXQ6PP77 449 aa13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 BNC2Q6ZN30 1099 aaPredicted RBP13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 LRRC70Q7Z2Q7 622 aa13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 PDPRQ8NCN5 879 aa13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 B3GNT7Q8NFL0 401 aa13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 OR2L5Q8NG80 312 aa13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 CCT6BQ92526 530 aa13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 KIAA1191Q96A73 305 aa13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 MS4A6EQ96DS6 147 aa13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 VMP1Q96GC9 406 aa13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 SERINC2Q96SA4 455 aa13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 CCDC77Q9BR77 488 aa13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 REXO4Q9GZR2 422 aaKnown RBP13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 NMRAL1Q9HBL8 299 aa13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 CHST11Q9NPF2 352 aa13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 PRTFDC1Q9NRG1 225 aa13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 PPIEQ9UNP9 301 aaKnown RBP13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 KLF13Q9Y2Y9 288 aaPredicted RBP13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 MTO1Q9Y2Z2 717 aaKnown RBP13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 SPACA6W5XKT8 324 aa13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 CACNA1DQ01668 2161 aa13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 MYO7BQ6PIF6 2116 aa13.51□□□□□ -0.25
HMGCS1-203ENST00000507004 ENO4A6NNW6 628 aa13.5□□□□□ -0.25
HMGCS1-203ENST00000507004 KLRC4-KLRK1H3BQV0 150 aa13.5□□□□□ -0.25
HMGCS1-203ENST00000507004 CCL21O00585 134 aa13.5□□□□□ -0.25
HMGCS1-203ENST00000507004 SLC19A2O60779 497 aa13.5□□□□□ -0.25
HMGCS1-203ENST00000507004 SLC25A12O75746 678 aa13.5□□□□□ -0.25
HMGCS1-203ENST00000507004 NEURL1O76050 574 aa13.5□□□□□ -0.25
HMGCS1-203ENST00000507004 ESRRAP11474 423 aaPredicted RBP13.5□□□□□ -0.25
HMGCS1-203ENST00000507004 CD1DP15813 335 aa13.5□□□□□ -0.25
HMGCS1-203ENST00000507004 TFEBP19484 476 aa13.5□□□□□ -0.25
HMGCS1-203ENST00000507004 MST1P26927 711 aa13.5□□□□□ -0.25
HMGCS1-203ENST00000507004 CRABP2P29373 138 aa13.5□□□□□ -0.25
HMGCS1-203ENST00000507004 CASQ1P31415 396 aa13.5□□□□□ -0.25
HMGCS1-203ENST00000507004 SPINK14Q6IE38 97 aa13.5□□□□□ -0.25
HMGCS1-203ENST00000507004 CAPN12Q6ZSI9 719 aa13.5□□□□□ -0.25
HMGCS1-203ENST00000507004 CEP128Q6ZU80 1094 aa13.5□□□□□ -0.25
HMGCS1-203ENST00000507004 GALNTL5Q7Z4T8 443 aa13.5□□□□□ -0.25
HMGCS1-203ENST00000507004 TBC1D1Q86TI0 1168 aaPredicted RBP13.5□□□□□ -0.25
HMGCS1-203ENST00000507004 TICAM1Q8IUC6 712 aa13.5□□□□□ -0.25
HMGCS1-203ENST00000507004 SCUBE1Q8IWY4 988 aa13.5□□□□□ -0.25
HMGCS1-203ENST00000507004 CTAGE3PQ8IX95 158 aa13.5□□□□□ -0.25
HMGCS1-203ENST00000507004 GPALPP1Q8IXQ4 340 aa13.5□□□□□ -0.25
HMGCS1-203ENST00000507004 GHDCQ8N2G8 530 aa13.5□□□□□ -0.25
HMGCS1-203ENST00000507004 TMEM132CQ8N3T6 1108 aa13.5□□□□□ -0.25
HMGCS1-203ENST00000507004 NFAM1Q8NET5 270 aaPredicted RBP13.5□□□□□ -0.25
HMGCS1-203ENST00000507004 UBXN10Q96LJ8 280 aa13.5□□□□□ -0.25
HMGCS1-203ENST00000507004 SIGLEC12Q96PQ1 595 aa13.5□□□□□ -0.25
HMGCS1-203ENST00000507004 DPH5Q9H2P9 285 aa13.5□□□□□ -0.25
HMGCS1-203ENST00000507004 RHBGQ9H310 441 aa13.5□□□□□ -0.25
HMGCS1-203ENST00000507004 KLHL31Q9H511 634 aa13.5□□□□□ -0.25
HMGCS1-203ENST00000507004 ADAP2Q9NPF8 381 aa13.5□□□□□ -0.25
HMGCS1-203ENST00000507004 NUDT4Q9NZJ9 180 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms