RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 OR1D5P58170 312 aa2.88□□□□□ -1.95
VPS50-219ENST00000495039 ROR1Q01973 937 aa2.88□□□□□ -1.95
VPS50-219ENST00000495039 SRSF9Q13242 221 aaKnown RBP eCLIP2.88□□□□□ -1.95
VPS50-219ENST00000495039 TRA2AQ13595 282 aaKnown RBP eCLIP2.88□□□□□ -1.95
VPS50-219ENST00000495039 SCARB2Q14108 478 aa2.88□□□□□ -1.95
VPS50-219ENST00000495039 ZNF542PQ5EBM4 170 aa2.88□□□□□ -1.95
VPS50-219ENST00000495039 HECTD3Q5T447 861 aa2.88□□□□□ -1.95
VPS50-219ENST00000495039 MACC1Q6ZN28 852 aa2.88□□□□□ -1.95
VPS50-219ENST00000495039 ZER1Q7Z7L7 766 aa2.88□□□□□ -1.95
VPS50-219ENST00000495039 ANKRD46Q86W74 232 aa2.88□□□□□ -1.95
VPS50-219ENST00000495039 MEX3DQ86XN8 651 aaKnown RBP2.88□□□□□ -1.95
VPS50-219ENST00000495039 NHLRC2Q8NBF2 726 aa2.88□□□□□ -1.95
VPS50-219ENST00000495039 CHURC1Q8WUH1 139 aa2.88□□□□□ -1.95
VPS50-219ENST00000495039 CORO2AQ92828 525 aa2.88□□□□□ -1.95
VPS50-219ENST00000495039 SGF29Q96ES7 293 aa2.88□□□□□ -1.95
VPS50-219ENST00000495039 ATXN7L3BQ96GX2 97 aa2.88□□□□□ -1.95
VPS50-219ENST00000495039 B3GALT6Q96L58 329 aa2.88□□□□□ -1.95
VPS50-219ENST00000495039 TSSK2Q96PF2 358 aa2.88□□□□□ -1.95
VPS50-219ENST00000495039 NEDD4LQ96PU5 975 aa2.88□□□□□ -1.95
VPS50-219ENST00000495039 PARK7Q99497 189 aaKnown RBP2.88□□□□□ -1.95
VPS50-219ENST00000495039 IL12RB2Q99665 862 aa2.88□□□□□ -1.95
VPS50-219ENST00000495039 ALKBH7Q9BT30 221 aaPredicted RBP2.88□□□□□ -1.95
VPS50-219ENST00000495039 UBQLN3Q9H347 655 aa2.88□□□□□ -1.95
VPS50-219ENST00000495039 GPN1Q9HCN4 374 aaPredicted RBP2.88□□□□□ -1.95
VPS50-219ENST00000495039 RAB9BQ9NP90 201 aa2.88□□□□□ -1.95
VPS50-219ENST00000495039 IARS2Q9NSE4 1012 aaKnown RBP2.88□□□□□ -1.95
VPS50-219ENST00000495039 EXOC1Q9NV70 894 aa2.88□□□□□ -1.95
VPS50-219ENST00000495039 POLKQ9UBT6 870 aa2.88□□□□□ -1.95
VPS50-219ENST00000495039 LNPEPQ9UIQ6 1025 aa2.88□□□□□ -1.95
VPS50-219ENST00000495039 PILRBQ9UKJ0 227 aa2.88□□□□□ -1.95
VPS50-219ENST00000495039 NCKAP1Q9Y2A7 1128 aa2.88□□□□□ -1.95
VPS50-219ENST00000495039 WIPI2Q9Y4P8 454 aa2.88□□□□□ -1.95
VPS50-219ENST00000495039 KLK4Q9Y5K2 254 aa2.88□□□□□ -1.95
VPS50-219ENST00000495039 HCFC1P51610 2035 aa2.88□□□□□ -1.95
VPS50-219ENST00000495039 ZNF840PA6NDX5 716 aa2.87□□□□□ -1.95
VPS50-219ENST00000495039 E5RGE8 158 aa2.87□□□□□ -1.95
VPS50-219ENST00000495039 SLC30A4O14863 429 aa2.87□□□□□ -1.95
VPS50-219ENST00000495039 SURF4O15260 269 aa2.87□□□□□ -1.95
VPS50-219ENST00000495039 EEF2P13639 858 aaKnown RBP2.87□□□□□ -1.95
VPS50-219ENST00000495039 GLULP15104 373 aa2.87□□□□□ -1.95
VPS50-219ENST00000495039 OR3A3P47888 321 aa2.87□□□□□ -1.95
VPS50-219ENST00000495039 NDPQ00604 133 aa2.87□□□□□ -1.95
VPS50-219ENST00000495039 DHODHQ02127 395 aa2.87□□□□□ -1.95
VPS50-219ENST00000495039 CETN1Q12798 172 aa2.87□□□□□ -1.95
VPS50-219ENST00000495039 ABRQ12979 859 aa2.87□□□□□ -1.95
VPS50-219ENST00000495039 FAM106AQ4KMX7 169 aa2.87□□□□□ -1.95
VPS50-219ENST00000495039 ZRANB3Q5FWF4 1079 aa2.87□□□□□ -1.95
VPS50-219ENST00000495039 NHSL2Q5HYW2 709 aa2.87□□□□□ -1.95
VPS50-219ENST00000495039 ATP1A1-AS1Q5TC04 95 aa2.87□□□□□ -1.95
VPS50-219ENST00000495039 DHRS11Q6UWP2 260 aa2.87□□□□□ -1.95
VPS50-219ENST00000495039 FAM131BQ86XD5 332 aa2.87□□□□□ -1.95
VPS50-219ENST00000495039 UBLCP1Q8WVY7 318 aaPredicted RBP2.87□□□□□ -1.95
VPS50-219ENST00000495039 MR1Q95460 341 aa2.87□□□□□ -1.95
VPS50-219ENST00000495039 FAM218AQ96MZ4 157 aa2.87□□□□□ -1.95
VPS50-219ENST00000495039 DNAI2Q9GZS0 605 aa2.87□□□□□ -1.95
VPS50-219ENST00000495039 LSG1Q9H089 658 aaKnown RBP2.87□□□□□ -1.95
VPS50-219ENST00000495039 MRGBPQ9NV56 204 aa2.87□□□□□ -1.95
VPS50-219ENST00000495039 TMOD3Q9NYL9 352 aa2.87□□□□□ -1.95
VPS50-219ENST00000495039 ARMCX3Q9UH62 379 aaPredicted RBP2.87□□□□□ -1.95
VPS50-219ENST00000495039 NSG2Q9Y328 171 aa2.87□□□□□ -1.95
VPS50-219ENST00000495039 A0A087WZ39 114 aa2.86□□□□□ -1.95
VPS50-219ENST00000495039 A0A0B4J203 849 aa2.86□□□□□ -1.95
VPS50-219ENST00000495039 ILVBLA1L0T0 632 aa2.86□□□□□ -1.95
VPS50-219ENST00000495039 TRIM49BA6NDI0 452 aa2.86□□□□□ -1.95
VPS50-219ENST00000495039 OOEPA6NGQ2 149 aa2.86□□□□□ -1.95
VPS50-219ENST00000495039 KBTBD13C9JR72 458 aa2.86□□□□□ -1.95
VPS50-219ENST00000495039 NPIPB9F8W1W9 429 aa2.86□□□□□ -1.95
VPS50-219ENST00000495039 PGRMC2O15173 223 aa2.86□□□□□ -1.95
VPS50-219ENST00000495039 LRCH4O75427 683 aa2.86□□□□□ -1.95
VPS50-219ENST00000495039 MT-ND2P03891 347 aa2.86□□□□□ -1.95
VPS50-219ENST00000495039 DLATP10515 647 aaKnown RBP2.86□□□□□ -1.95
VPS50-219ENST00000495039 PDHA2P29803 388 aa2.86□□□□□ -1.95
VPS50-219ENST00000495039 IRX4P78413 519 aa2.86□□□□□ -1.95
VPS50-219ENST00000495039 FOLH1Q04609 750 aa2.86□□□□□ -1.95
VPS50-219ENST00000495039 PPA1Q15181 289 aa2.86□□□□□ -1.95
VPS50-219ENST00000495039 FAM189A2Q15884 450 aa2.86□□□□□ -1.95
VPS50-219ENST00000495039 ALDH1L2Q3SY69 923 aa2.86□□□□□ -1.95
VPS50-219ENST00000495039 DDX59Q5T1V6 619 aaKnown RBP eCLIP2.86□□□□□ -1.95
VPS50-219ENST00000495039 OLFML2AQ68BL7 652 aa2.86□□□□□ -1.95
VPS50-219ENST00000495039 LCLAT1Q6UWP7 414 aa2.86□□□□□ -1.95
VPS50-219ENST00000495039 COX8CQ7Z4L0 72 aa2.86□□□□□ -1.95
VPS50-219ENST00000495039 CREBRFQ8IUR6 639 aa2.86□□□□□ -1.95
VPS50-219ENST00000495039 PHC2Q8IXK0 858 aa2.86□□□□□ -1.95
VPS50-219ENST00000495039 CCDC185Q8N715 623 aa2.86□□□□□ -1.95
VPS50-219ENST00000495039 NKAIN3Q8N8D7 197 aa2.86□□□□□ -1.95
VPS50-219ENST00000495039 UXS1Q8NBZ7 420 aa2.86□□□□□ -1.95
VPS50-219ENST00000495039 RHOXF1Q8NHV9 184 aa2.86□□□□□ -1.95
VPS50-219ENST00000495039 AFAP1L1Q8TED9 768 aa2.86□□□□□ -1.95
VPS50-219ENST00000495039 CASP10Q92851 521 aa2.86□□□□□ -1.95
VPS50-219ENST00000495039 SERAC1Q96JX3 654 aa2.86□□□□□ -1.95
VPS50-219ENST00000495039 MLPHQ9BV36 600 aaPredicted RBP2.86□□□□□ -1.95
VPS50-219ENST00000495039 DPEP2Q9H4A9 486 aa2.86□□□□□ -1.95
VPS50-219ENST00000495039 GTSE1Q9NYZ3 720 aa2.86□□□□□ -1.95
VPS50-219ENST00000495039 DNAJB9Q9UBS3 223 aa2.86□□□□□ -1.95
VPS50-219ENST00000495039 BAIAP2L1Q9UHR4 511 aa2.86□□□□□ -1.95
VPS50-219ENST00000495039 CDH7Q9ULB5 785 aa2.86□□□□□ -1.95
VPS50-219ENST00000495039 PCDHGA1Q9Y5H4 931 aa2.86□□□□□ -1.95
VPS50-219ENST00000495039 STYXL1Q9Y6J8 313 aa2.86□□□□□ -1.95
VPS50-219ENST00000495039 RNF123Q5XPI4 1314 aa2.86□□□□□ -1.95
VPS50-219ENST00000495039 hCG_38984A0A1B0GV85 526 aa2.85□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms