RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 FICDQ9BVA6 458 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 CTDSP1Q9GZU7 261 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 PDZD7Q9H5P4 517 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 CCDC134Q9H6E4 229 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 NOL11Q9H8H0 719 aaKnown RBP4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 ZFP14Q9HCL3 533 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 THSD1Q9NS62 852 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 HIF1ANQ9NWT6 349 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 NKIRAS1Q9NYS0 192 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 CNOT2Q9NZN8 540 aaKnown RBP4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 ABI3Q9P2A4 366 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 ONECUT1Q9UBC0 465 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 GGA2Q9UJY4 613 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 VANGL2Q9ULK5 521 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 ICKQ9UPZ9 632 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 EXO1Q9UQ84 846 aaKnown RBP4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 MRPS33Q9Y291 106 aaKnown RBP4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 IFT52Q9Y366 437 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 USP16Q9Y5T5 823 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 STON1Q9Y6Q2 735 aa4.58□□□□□ -1.68
CCDC88A-210ENST00000468534 A0A1W2PPV4 95 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 LOC390937A0A1W2PQ73 354 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 AGAP5A6NIR3 686 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 TRPC5OSA6NMA1 111 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 GRID2O43424 1007 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 ATG13O75143 517 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 VPS26AO75436 327 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 NEBLO76041 1014 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 PIGNO95427 931 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 MLNP12872 115 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 CCL2P13500 99 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 HOXB2P14652 356 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 FOSL2P15408 326 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 CEBPBP17676 345 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 POLR2EP19388 210 aaKnown RBP4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 MMP8P22894 467 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 KLRC2P26717 231 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 NDUFS1P28331 727 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 PDHA2P29803 388 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 BCAP31P51572 246 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 EFNA5P52803 228 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 DGKQP52824 942 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 F2RL1P55085 397 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 CDH6P55285 790 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 RPS15P62841 145 aaKnown RBP4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 HSF2Q03933 536 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 CDC20Q12834 499 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 ACOX1Q15067 660 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 TPD52L1Q16890 204 aaPredicted RBP4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 ANKRD55Q3KP44 614 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 XKR4Q5GH76 650 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 ZNF569Q5MCW4 686 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 PRAMEF5Q5TYX0 476 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 PRAMEF6Q5VXH4 476 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 NKAIN2Q5VXU1 208 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 PLCXD3Q63HM9 321 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 METTL2BQ6P1Q9 378 aaKnown RBP4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 CYB5D1Q6P9G0 228 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 CCDC137Q6PK04 289 aaKnown RBP4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 TSSK4Q6SA08 328 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 DHRS13Q6UX07 377 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 KCTD8Q6ZWB6 473 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 DCP1BQ8IZD4 617 aaKnown RBP4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 CCNYL1Q8N7R7 359 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 OR7G1Q8NGA0 311 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 OR13F1Q8NGS4 319 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 RAB40AQ8WXH6 277 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 IRGQQ8WZA9 623 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 MRGPRFQ96AM1 343 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 SLCO4A1Q96BD0 722 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 SPSB1Q96BD6 273 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 AP2M1Q96CW1 435 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 MSI2Q96DH6 328 aaKnown RBP4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 ZNF514Q96K75 400 aaPredicted RBP4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 SENP8Q96LD8 212 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 FAM110AQ9BQ89 295 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 MXRA8Q9BRK3 442 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 PAAF1Q9BRP4 392 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 IFIH1Q9BYX4 1025 aaKnown RBP4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 MAGT1Q9H0U3 335 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 OR51V1Q9H2C8 321 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 TMEM245Q9H330 911 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 ATP13A3Q9H7F0 1226 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 TMEM185BQ9H7F4 350 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 ACTR8Q9H981 624 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 ROPN1Q9HAT0 212 aaPredicted RBP4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 VAT1LQ9HCJ6 419 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 MKKSQ9NPJ1 570 aaPredicted RBP4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 PNO1Q9NRX1 252 aaKnown RBP4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 ELOVL2Q9NXB9 296 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 DLGAP2Q9P1A6 1054 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 PSMC3IPQ9P2W1 217 aaPredicted RBP4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 ATXN10Q9UBB4 475 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 DNAJB4Q9UDY4 337 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 SAMHD1Q9Y3Z3 626 aaKnown RBP4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 NFE2L3Q9Y4A8 694 aa4.57□□□□□ -1.68
CCDC88A-210ENST00000468534 SF3B1O75533 1304 aaKnown RBP eCLIP4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 SPATA31A5Q5VU36 1347 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 SPATA31A7Q8IWB4 1347 aa4.56□□□□□ -1.68
CCDC88A-210ENST00000468534 LOC105369274A0A096LPK9 316 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms