RNA–Protein interactions for RNA: ENST00000463818.1

SF3A1-205, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 583 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-205ENST00000463818 TMEM79Q9BSE2 394 aa17.66■□□□□ 0.42
SF3A1-205ENST00000463818 DNAJC11Q9NVH1 559 aa17.66■□□□□ 0.42
SF3A1-205ENST00000463818 WWOXQ9NZC7 414 aa17.66■□□□□ 0.42
SF3A1-205ENST00000463818 GPRC5BQ9NZH0 403 aa17.66■□□□□ 0.42
SF3A1-205ENST00000463818 LRFN1Q9P244 771 aa17.66■□□□□ 0.42
SF3A1-205ENST00000463818 ANKDD1BA6NHY2 528 aa17.65■□□□□ 0.42
SF3A1-205ENST00000463818 SAGE2PA6NJ88 616 aa17.65■□□□□ 0.42
SF3A1-205ENST00000463818 CLGNO14967 610 aa17.65■□□□□ 0.42
SF3A1-205ENST00000463818 PRAMEF4O60810 478 aa17.65■□□□□ 0.42
SF3A1-205ENST00000463818 STK16O75716 305 aa17.65■□□□□ 0.42
SF3A1-205ENST00000463818 NEURL1O76050 574 aa17.65■□□□□ 0.42
SF3A1-205ENST00000463818 SP1P08047 785 aa17.65■□□□□ 0.42
SF3A1-205ENST00000463818 CASQ1P31415 396 aa17.65■□□□□ 0.42
SF3A1-205ENST00000463818 HNRNPH1P31943 449 aaKnown RBP17.65■□□□□ 0.42
SF3A1-205ENST00000463818 GP5P40197 560 aa17.65■□□□□ 0.42
SF3A1-205ENST00000463818 HSPA7P48741 367 aa17.65■□□□□ 0.42
SF3A1-205ENST00000463818 PLTPP55058 493 aa17.65■□□□□ 0.42
SF3A1-205ENST00000463818 MLF1P58340 268 aa17.65■□□□□ 0.42
SF3A1-205ENST00000463818 ETF1P62495 437 aaKnown RBP17.65■□□□□ 0.42
SF3A1-205ENST00000463818 OR4D1Q15615 310 aa17.65■□□□□ 0.42
SF3A1-205ENST00000463818 ZNF800Q2TB10 664 aaPredicted RBP eCLIP17.65■□□□□ 0.42
SF3A1-205ENST00000463818 CDKL4Q5MAI5 379 aa17.65■□□□□ 0.42
SF3A1-205ENST00000463818 PRAMEF9Q5VWM5 478 aa17.65■□□□□ 0.42
SF3A1-205ENST00000463818 SULT1C3Q6IMI6 304 aa17.65■□□□□ 0.42
SF3A1-205ENST00000463818 GALNTL5Q7Z4T8 443 aa17.65■□□□□ 0.42
SF3A1-205ENST00000463818 CTAGE3PQ8IX95 158 aa17.65■□□□□ 0.42
SF3A1-205ENST00000463818 TMEM178AQ8NBL3 297 aa17.65■□□□□ 0.42
SF3A1-205ENST00000463818 NPLQ9BXD5 320 aaPredicted RBP17.65■□□□□ 0.42
SF3A1-205ENST00000463818 PITHD1Q9GZP4 211 aaPredicted RBP17.65■□□□□ 0.42
SF3A1-205ENST00000463818 CNOT10Q9H9A5 744 aaKnown RBP17.65■□□□□ 0.42
SF3A1-205ENST00000463818 COPG2Q9UBF2 871 aa17.65■□□□□ 0.42
SF3A1-205ENST00000463818 ZNF490Q9ULM2 529 aaPredicted RBP17.65■□□□□ 0.42
SF3A1-205ENST00000463818 MMACHCQ9Y4U1 282 aa17.65■□□□□ 0.42
SF3A1-205ENST00000463818 CACNA1DQ01668 2161 aa17.64■□□□□ 0.42
SF3A1-205ENST00000463818 ASPDHA6ND91 283 aa17.64■□□□□ 0.41
SF3A1-205ENST00000463818 CCL21O00585 134 aa17.64■□□□□ 0.41
SF3A1-205ENST00000463818 CDK2AP1O14519 115 aa17.64■□□□□ 0.41
SF3A1-205ENST00000463818 ERI3O43414 337 aaKnown RBP17.64■□□□□ 0.41
SF3A1-205ENST00000463818 CLEC3AO75596 197 aa17.64■□□□□ 0.41
SF3A1-205ENST00000463818 C1QAP02745 245 aa17.64■□□□□ 0.41
SF3A1-205ENST00000463818 GSTA2P09210 222 aa17.64■□□□□ 0.41
SF3A1-205ENST00000463818 GSTM2P28161 218 aa17.64■□□□□ 0.41
SF3A1-205ENST00000463818 TPP2P29144 1249 aaPredicted RBP17.64■□□□□ 0.41
SF3A1-205ENST00000463818 SPRP35270 261 aaPredicted RBP17.64■□□□□ 0.41
SF3A1-205ENST00000463818 KCNC1P48547 511 aa17.64■□□□□ 0.41
SF3A1-205ENST00000463818 PLA2G16P53816 162 aa17.64■□□□□ 0.41
SF3A1-205ENST00000463818 ALDH6A1Q02252 535 aaKnown RBP17.64■□□□□ 0.41
SF3A1-205ENST00000463818 RBPJQ06330 500 aa17.64■□□□□ 0.41
SF3A1-205ENST00000463818 GRTP1Q5TC63 336 aa17.64■□□□□ 0.41
SF3A1-205ENST00000463818 SP5Q6BEB4 398 aaPredicted RBP17.64■□□□□ 0.41
SF3A1-205ENST00000463818 PNPLA5Q7Z6Z6 429 aaPredicted RBP17.64■□□□□ 0.41
SF3A1-205ENST00000463818 LURAP1LQ8IV03 231 aa17.64■□□□□ 0.41
SF3A1-205ENST00000463818 SNX31Q8N9S9 440 aa17.64■□□□□ 0.41
SF3A1-205ENST00000463818 SEC16BQ96JE7 1060 aa17.64■□□□□ 0.41
SF3A1-205ENST00000463818 QRFPRQ96P65 431 aa17.64■□□□□ 0.41
SF3A1-205ENST00000463818 DEFB126Q9BYW3 111 aa17.64■□□□□ 0.41
SF3A1-205ENST00000463818 EHD1Q9H4M9 534 aa17.64■□□□□ 0.41
SF3A1-205ENST00000463818 CD274Q9NZQ7 290 aa17.64■□□□□ 0.41
SF3A1-205ENST00000463818 PTBP2Q9UKA9 531 aaKnown RBP17.64■□□□□ 0.41
SF3A1-205ENST00000463818 UTP11Q9Y3A2 253 aaKnown RBP17.64■□□□□ 0.41
SF3A1-205ENST00000463818 NPIPA5E9PKD4 350 aa17.63■□□□□ 0.41
SF3A1-205ENST00000463818 B3GALT2O43825 422 aa17.63■□□□□ 0.41
SF3A1-205ENST00000463818 FAM155BO75949 473 aa17.63■□□□□ 0.41
SF3A1-205ENST00000463818 TBX6O95947 436 aaPredicted RBP17.63■□□□□ 0.41
SF3A1-205ENST00000463818 GMPRP36959 345 aa17.63■□□□□ 0.41
SF3A1-205ENST00000463818 CA7P43166 264 aa17.63■□□□□ 0.41
SF3A1-205ENST00000463818 RAB10P61026 200 aa17.63■□□□□ 0.41
SF3A1-205ENST00000463818 DOC2AQ14183 400 aa17.63■□□□□ 0.41
SF3A1-205ENST00000463818 TRADDQ15628 312 aa17.63■□□□□ 0.41
SF3A1-205ENST00000463818 ZKSCAN8Q15776 578 aaPredicted RBP17.63■□□□□ 0.41
SF3A1-205ENST00000463818 MAPKAPK3Q16644 382 aa17.63■□□□□ 0.41
SF3A1-205ENST00000463818 KRTCAP3Q53RY4 240 aa17.63■□□□□ 0.41
SF3A1-205ENST00000463818 XKR6Q5GH73 641 aa17.63■□□□□ 0.41
SF3A1-205ENST00000463818 VN1R5Q7Z5H4 357 aa17.63■□□□□ 0.41
SF3A1-205ENST00000463818 CCDC25Q86WR0 208 aa17.63■□□□□ 0.41
SF3A1-205ENST00000463818 SLC34A3Q8N130 599 aa17.63■□□□□ 0.41
SF3A1-205ENST00000463818 KIAA1191Q96A73 305 aa17.63■□□□□ 0.41
SF3A1-205ENST00000463818 UBXN10Q96LJ8 280 aa17.63■□□□□ 0.41
SF3A1-205ENST00000463818 REXO4Q9GZR2 422 aaKnown RBP17.63■□□□□ 0.41
SF3A1-205ENST00000463818 TSPAN10Q9H1Z9 355 aaPredicted RBP17.63■□□□□ 0.41
SF3A1-205ENST00000463818 PRTFDC1Q9NRG1 225 aa17.63■□□□□ 0.41
SF3A1-205ENST00000463818 PNO1Q9NRX1 252 aaKnown RBP17.63■□□□□ 0.41
SF3A1-205ENST00000463818 SUCOQ9UBS9 1254 aaKnown RBP17.63■□□□□ 0.41
SF3A1-205ENST00000463818 SH3BGRL2Q9UJC5 107 aa17.63■□□□□ 0.41
SF3A1-205ENST00000463818 NPIPA1Q9UND3 350 aa17.63■□□□□ 0.41
SF3A1-205ENST00000463818 CPAMD8Q8IZJ3 1885 aa17.63■□□□□ 0.41
SF3A1-205ENST00000463818 CROCCQ5TZA2 2017 aa17.62■□□□□ 0.41
SF3A1-205ENST00000463818 MYO7BQ6PIF6 2116 aa17.62■□□□□ 0.41
SF3A1-205ENST00000463818 A0A088AWK7 358 aa17.62■□□□□ 0.41
SF3A1-205ENST00000463818 CLDN4O14493 209 aa17.62■□□□□ 0.41
SF3A1-205ENST00000463818 CCNT2O60583 730 aaKnown RBP17.62■□□□□ 0.41
SF3A1-205ENST00000463818 SLC25A12O75746 678 aa17.62■□□□□ 0.41
SF3A1-205ENST00000463818 MYO1DO94832 1006 aa17.62■□□□□ 0.41
SF3A1-205ENST00000463818 MLYCDO95822 493 aa17.62■□□□□ 0.41
SF3A1-205ENST00000463818 ZNF10P21506 573 aaPredicted RBP17.62■□□□□ 0.41
SF3A1-205ENST00000463818 MAGEA4P43358 317 aa17.62■□□□□ 0.41
SF3A1-205ENST00000463818 CYB561P49447 251 aa17.62■□□□□ 0.41
SF3A1-205ENST00000463818 HNRNPFP52597 415 aaKnown RBP17.62■□□□□ 0.41
SF3A1-205ENST00000463818 HSD17B7P56937 341 aa17.62■□□□□ 0.41
SF3A1-205ENST00000463818 RAB38P57729 211 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms