RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 ATP6V0D1P61421 351 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 REEP5Q00765 189 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 PDIA2Q13087 525 aaKnown RBP6.63□□□□□ -1.35
VPS41-208ENST00000448833 EFTUD2Q15029 972 aaKnown RBP eCLIP6.63□□□□□ -1.35
VPS41-208ENST00000448833 PPP1R3AQ16821 1122 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 ZNF630Q2M218 657 aaPredicted RBP6.63□□□□□ -1.35
VPS41-208ENST00000448833 MSS51Q4VC12 460 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 PAGE2BQ5JRK9 111 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 SPINK14Q6IE38 97 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 TRIM40Q6P9F5 258 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 CYS1Q717R9 158 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 GDF7Q7Z4P5 450 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 GALNTL5Q7Z4T8 443 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 TMPRSS11BQ86T26 416 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 ZC3HC1Q86WB0 502 aaKnown RBP6.63□□□□□ -1.35
VPS41-208ENST00000448833 GPALPP1Q8IXQ4 340 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 KLHL7Q8IXQ5 586 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 ZNF595Q8IYB9 648 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 KLHDC8AQ8IYD2 350 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 ARMC10Q8N2F6 343 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 TMEM132CQ8N3T6 1108 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 TMEM156Q8N614 296 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 ANKK1Q8NFD2 765 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 B3GNT7Q8NFL0 401 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 PYROXD1Q8WU10 500 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 UBE2E3Q969T4 207 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 GAL3ST3Q96A11 431 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 VMP1Q96GC9 406 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 CCDC120Q96HB5 630 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 SMIM10Q96HG1 83 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 TSNARE1Q96NA8 513 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 SIGLEC12Q96PQ1 595 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 DERL2Q9GZP9 239 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 RHOJQ9H4E5 214 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 COQ3Q9NZJ6 369 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 NPIPA1Q9UND3 350 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 SH2B3Q9UQQ2 575 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 YARS2Q9Y2Z4 477 aaKnown RBP6.63□□□□□ -1.35
VPS41-208ENST00000448833 SPACA6W5XKT8 324 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 DCHS2Q6V1P9 2916 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 PHF3Q92576 2039 aaKnown RBP6.62□□□□□ -1.35
VPS41-208ENST00000448833 FAM95CA0A1B0GW59 222 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 LRIT2A6NDA9 550 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 OR2W5A6NFC9 320 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 ZNF860A6NHJ4 632 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 E7ESA3 106 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 E9PLN8 166 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 DYRK3O43781 588 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 NME2P1O60361 137 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 NEURL1O76050 574 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 ZFAND5O76080 213 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 WDR47O94967 919 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 SEC31AO94979 1220 aaKnown RBP6.62□□□□□ -1.35
VPS41-208ENST00000448833 F7P08709 466 aaPredicted RBP6.62□□□□□ -1.35
VPS41-208ENST00000448833 STMN1P16949 149 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 ZNF24P17028 368 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 TFEBP19484 476 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 CAPN3P20807 821 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 NME2P22392 152 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 TPP2P29144 1249 aaPredicted RBP6.62□□□□□ -1.35
VPS41-208ENST00000448833 SERPINB1P30740 379 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 SSTR2P30874 369 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 GGT5P36269 586 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 HNF4AP41235 474 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 EFNA3P52797 238 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 ITGA8P53708 1063 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 RAB8AP61006 207 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 GNG11P61952 73 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 BTN3A2P78410 334 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 CAV1Q03135 178 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 TBL3Q12788 808 aaKnown RBP6.62□□□□□ -1.35
VPS41-208ENST00000448833 SLC13A2Q13183 592 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 SERTAD2Q14140 314 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 ZXDCQ2QGD7 858 aaPredicted RBP6.62□□□□□ -1.35
VPS41-208ENST00000448833 TOR1AIP1Q5JTV8 583 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 HP1BP3Q5SSJ5 553 aaPredicted RBP6.62□□□□□ -1.35
VPS41-208ENST00000448833 FCRLBQ6BAA4 426 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 TMEM211Q6ICI0 200 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 SULT1C3Q6IMI6 304 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 SLCO4C1Q6ZQN7 724 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 RGS9BPQ6ZS82 235 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 CCDC91Q7Z6B0 441 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.62□□□□□ -1.35
VPS41-208ENST00000448833 GPSM1Q86YR5 675 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 CREG2Q8IUH2 290 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 ANKMY2Q8IV38 441 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 IGDCC3Q8IVU1 814 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 MCEMP1Q8IX19 187 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 SRRM1Q8IYB3 904 aaKnown RBP6.62□□□□□ -1.35
VPS41-208ENST00000448833 ZBED8Q8IZ13 594 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 ANKRD53Q8N9V6 530 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 FBXO36Q8NEA4 188 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 OR2L5Q8NG80 312 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 OR5T3Q8NGG3 340 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 CREB3L4Q8TEY5 395 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 PHF10Q8WUB8 498 aaKnown RBP6.62□□□□□ -1.35
VPS41-208ENST00000448833 DAZLQ92904 295 aaKnown RBP6.62□□□□□ -1.35
VPS41-208ENST00000448833 RHBDF1Q96CC6 855 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 PTCD3Q96EY7 689 aaKnown RBP6.62□□□□□ -1.35
VPS41-208ENST00000448833 FRMD6Q96NE9 622 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms