RNA–Protein interactions for RNA: ENST00000433297.2

HMGCS1-202, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene HMGCS1, Length 3,466 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-202ENST00000433297 PDPK1O15530 556 aa11.09□□□□□ -0.63
HMGCS1-202ENST00000433297 FABP7O15540 132 aa11.09□□□□□ -0.63
HMGCS1-202ENST00000433297 GADD45GO95257 159 aa11.09□□□□□ -0.63
HMGCS1-202ENST00000433297 TRBC1P01850 177 aa11.09□□□□□ -0.63
HMGCS1-202ENST00000433297 CCT3P49368 545 aaKnown RBP11.09□□□□□ -0.63
HMGCS1-202ENST00000433297 CRYBB1P53674 252 aaPredicted RBP11.09□□□□□ -0.63
HMGCS1-202ENST00000433297 BEX3Q00994 111 aa11.09□□□□□ -0.63
HMGCS1-202ENST00000433297 TNK1Q13470 666 aa11.09□□□□□ -0.63
HMGCS1-202ENST00000433297 C1DQ13901 141 aaKnown RBP11.09□□□□□ -0.63
HMGCS1-202ENST00000433297 PCBP1Q15365 356 aaKnown RBP eCLIP11.09□□□□□ -0.63
HMGCS1-202ENST00000433297 TYW3Q6IPR3 259 aaKnown RBP11.09□□□□□ -0.63
HMGCS1-202ENST00000433297 ANKRD54Q6NXT1 300 aa11.09□□□□□ -0.63
HMGCS1-202ENST00000433297 PRRT2Q7Z6L0 340 aaPredicted RBP11.09□□□□□ -0.63
HMGCS1-202ENST00000433297 PDZD3Q86UT5 571 aa11.09□□□□□ -0.63
HMGCS1-202ENST00000433297 TTC9Q92623 222 aa11.09□□□□□ -0.63
HMGCS1-202ENST00000433297 UPRTQ96BW1 309 aa11.09□□□□□ -0.63
HMGCS1-202ENST00000433297 ZBED6CLQ96FA7 236 aaPredicted RBP11.09□□□□□ -0.63
HMGCS1-202ENST00000433297 ZNF408Q9H9D4 720 aa11.09□□□□□ -0.63
HMGCS1-202ENST00000433297 TXNL4BQ9NX01 149 aaKnown RBP11.09□□□□□ -0.63
HMGCS1-202ENST00000433297 RIMKLBQ9ULI2 386 aa11.09□□□□□ -0.63
HMGCS1-202ENST00000433297 SNX11Q9Y5W9 270 aa11.09□□□□□ -0.63
HMGCS1-202ENST00000433297 LTBP3Q9NS15 1303 aa11.09□□□□□ -0.63
HMGCS1-202ENST00000433297 NFKBIEO00221 500 aa11.09□□□□□ -0.63
HMGCS1-202ENST00000433297 HBQ1P09105 142 aa11.09□□□□□ -0.63
HMGCS1-202ENST00000433297 PRPS1L1P21108 318 aa11.09□□□□□ -0.63
HMGCS1-202ENST00000433297 YBEYP58557 167 aaPredicted RBP11.09□□□□□ -0.63
HMGCS1-202ENST00000433297 SNAPC1Q16533 368 aa11.09□□□□□ -0.63
HMGCS1-202ENST00000433297 CRTC2Q53ET0 693 aaPredicted RBP11.09□□□□□ -0.63
HMGCS1-202ENST00000433297 IFI44LQ53G44 452 aa11.09□□□□□ -0.63
HMGCS1-202ENST00000433297 C11orf65Q8NCR3 313 aa11.09□□□□□ -0.63
HMGCS1-202ENST00000433297 OR4M2Q8NGB6 313 aa11.09□□□□□ -0.63
HMGCS1-202ENST00000433297 ZNF431Q8TF32 576 aaPredicted RBP11.09□□□□□ -0.63
HMGCS1-202ENST00000433297 KLHL6Q8WZ60 621 aa11.09□□□□□ -0.63
HMGCS1-202ENST00000433297 FBXO32Q969P5 355 aa11.09□□□□□ -0.63
HMGCS1-202ENST00000433297 TESCQ96BS2 214 aa11.09□□□□□ -0.63
HMGCS1-202ENST00000433297 PKP4Q99569 1192 aa11.09□□□□□ -0.63
HMGCS1-202ENST00000433297 TAPBPLQ9BX59 468 aa11.09□□□□□ -0.63
HMGCS1-202ENST00000433297 NIPAL2Q9H841 368 aa11.09□□□□□ -0.63
HMGCS1-202ENST00000433297 SLC22A14Q9Y267 594 aa11.09□□□□□ -0.63
HMGCS1-202ENST00000433297 PCDHB11Q9Y5F2 797 aa11.09□□□□□ -0.63
HMGCS1-202ENST00000433297 F5H5T6 163 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 KPNA5O15131 536 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 ARSBP15848 533 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 ENPP1P22413 925 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 CSTF2P33240 577 aaKnown RBP eCLIP11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 PTPN5P54829 565 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 RRAS2P62070 204 aaPredicted RBP11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 LRRC32Q14392 662 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 ASB18Q6ZVZ8 466 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 C16orf59Q7L2K0 433 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 OTOP2Q7RTS6 562 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 ADGRG2Q8IZP9 1017 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 ZBTB2Q8N680 514 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 TTC9BQ8N6N2 239 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 CELF5Q8N6W0 485 aaKnown RBP11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 ZFP41Q8N8Y5 198 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 GPR156Q8NFN8 814 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 SLC25A46Q96AG3 418 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 TMEM80Q96HE8 168 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 TM9SF2Q99805 663 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 MGME1Q9BQP7 344 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 DUSP26Q9BV47 211 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 HDHD2Q9H0R4 259 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 P2RY12Q9H244 342 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 ANKRA2Q9H9E1 313 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 NMRK2Q9NPI5 230 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 ZC4H2Q9NQZ6 224 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 RAB23Q9ULC3 237 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 INMT-MINDY4F8WBC2 141 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 TLR4O00206 839 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 LYRM1O43325 122 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 HOXB9P17482 250 aaPredicted RBP11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 CRISP1P54107 249 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 TAGLNQ01995 201 aaKnown RBP11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 CACNG1Q06432 222 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 HSPA14Q0VDF9 509 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 FGFBP1Q14512 234 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 RGNQ15493 299 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 HKDC1Q2TB90 917 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 COX20Q5RI15 118 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 FRMPD2BQ6IN97 320 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 DENND1CQ8IV53 801 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 SYNPOQ8N3V7 929 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 TCEANCQ8N8B7 351 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 ATAD1Q8NBU5 361 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 GALNT6Q8NCL4 622 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 OR4K1Q8NGD4 311 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 NFKBIDQ8NI38 313 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 PSKH2Q96QS6 385 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 NELL2Q99435 816 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 SLC29A3Q9BZD2 475 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.08□□□□□ -0.641e-46■■□□□ 11.5
HMGCS1-202ENST00000433297 TMEM161AQ9NX61 479 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 CRLS1Q9UJA2 301 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 MGAT4AQ9UM21 535 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 PADI2Q9Y2J8 665 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 ZFP37Q9Y6Q3 630 aaPredicted RBP11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 CASKO14936 926 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 ORC5O43913 435 aa11.08□□□□□ -0.64
HMGCS1-202ENST00000433297 HPGDSO60760 199 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms