RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 C9J4A7 227 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 NPIPB8E9PQR5 432 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 SDHDO14521 159 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 LSM1O15116 133 aaKnown RBP9.6□□□□□ -0.87
CD44-207ENST00000425428 NRP2O60462 931 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 SNX3O60493 162 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 DKK1O94907 266 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 NSA2O95478 260 aaKnown RBP9.6□□□□□ -0.87
CD44-207ENST00000425428 HIST1H1TP22492 207 aaPredicted RBP9.6□□□□□ -0.87
CD44-207ENST00000425428 TIA1P31483 386 aaKnown RBP eCLIP9.6□□□□□ -0.87
CD44-207ENST00000425428 HPCAL1P37235 193 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 TRA2BP62995 288 aaKnown RBP9.6□□□□□ -0.87
CD44-207ENST00000425428 ZNF763Q0D2J5 394 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 HEPACAMQ14CZ8 416 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 PRTGQ2VWP7 1150 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 ADPRMQ3LIE5 342 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 SLC9B1Q4ZJI4 515 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 C6orf136Q5SQH8 315 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 VWA5B1Q5TIE3 1220 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 NOXRED1Q6NXP6 359 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 ABHD17CQ6PCB6 329 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 TMPRSS7Q7RTY8 843 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 COMMD6Q7Z4G1 85 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 R3HCC1LQ7Z5L2 792 aaKnown RBP9.6□□□□□ -0.87
CD44-207ENST00000425428 TMEM132CQ8N3T6 1108 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 RFWD2Q8NHY2 731 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 CHTF18Q8WVB6 975 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 ZNF285Q96NJ3 590 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 MACROD1Q9BQ69 325 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 B3GNT4Q9C0J1 378 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 TUBB1Q9H4B7 451 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 WDR55Q9H6Y2 383 aaPredicted RBP9.6□□□□□ -0.87
CD44-207ENST00000425428 POLR1BQ9H9Y6 1135 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 ZNF304Q9HCX3 659 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 MIEF1Q9NQG6 463 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 GIMAP4Q9NUV9 329 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 SATB2Q9UPW6 733 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 NAALAD2Q9Y3Q0 740 aa9.6□□□□□ -0.87
CD44-207ENST00000425428 E9PBE3 544 aa9.59□□□□□ -0.87
CD44-207ENST00000425428 CLDN4O14493 209 aa9.59□□□□□ -0.87
CD44-207ENST00000425428 PLPP1O14494 284 aa9.59□□□□□ -0.87
CD44-207ENST00000425428 P2RX6O15547 441 aa9.59□□□□□ -0.87
CD44-207ENST00000425428 KLHL41O60662 606 aa9.59□□□□□ -0.87
CD44-207ENST00000425428 KLHL18O94889 574 aa9.59□□□□□ -0.87
CD44-207ENST00000425428 IL1RNP18510 177 aa9.59□□□□□ -0.87
CD44-207ENST00000425428 ITGAXP20702 1163 aa9.59□□□□□ -0.87
CD44-207ENST00000425428 FBLP22087 321 aaKnown RBP9.59□□□□□ -0.87
CD44-207ENST00000425428 IL10P22301 178 aa9.59□□□□□ -0.87
CD44-207ENST00000425428 CD82P27701 267 aa9.59□□□□□ -0.87
CD44-207ENST00000425428 HNRNPH1P31943 449 aaKnown RBP9.59□□□□□ -0.87
CD44-207ENST00000425428 GABRA4P48169 554 aa9.59□□□□□ -0.87
CD44-207ENST00000425428 CLNS1AP54105 237 aaKnown RBP9.59□□□□□ -0.87
CD44-207ENST00000425428 DCDP81605 110 aaKnown RBP9.59□□□□□ -0.87
CD44-207ENST00000425428 OCA2Q04671 838 aa9.59□□□□□ -0.87
CD44-207ENST00000425428 SF3A3Q12874 501 aaKnown RBP eCLIP9.59□□□□□ -0.87
CD44-207ENST00000425428 SLAMF1Q13291 335 aa9.59□□□□□ -0.87
CD44-207ENST00000425428 LSM12Q3MHD2 195 aaKnown RBP9.59□□□□□ -0.87
CD44-207ENST00000425428 ARHGAP40Q5TG30 622 aa9.59□□□□□ -0.87
CD44-207ENST00000425428 IL23RQ5VWK5 629 aa9.59□□□□□ -0.87
CD44-207ENST00000425428 OGFOD2Q6N063 350 aa9.59□□□□□ -0.87
CD44-207ENST00000425428 RHBDD2Q6NTF9 364 aa9.59□□□□□ -0.87
CD44-207ENST00000425428 Q6ZSR9 355 aa9.59□□□□□ -0.87
CD44-207ENST00000425428 LARP4Q71RC2 724 aaKnown RBP eCLIP9.59□□□□□ -0.87
CD44-207ENST00000425428 VN1R5Q7Z5H4 357 aa9.59□□□□□ -0.87
CD44-207ENST00000425428 DSELQ8IZU8 1212 aa9.59□□□□□ -0.87
CD44-207ENST00000425428 MIER2Q8N344 545 aa9.59□□□□□ -0.87
CD44-207ENST00000425428 ZCCHC7Q8N3Z6 543 aaKnown RBP9.59□□□□□ -0.87
CD44-207ENST00000425428 RNF175Q8N4F7 328 aa9.59□□□□□ -0.87
CD44-207ENST00000425428 EFCAB3Q8N7B9 438 aa9.59□□□□□ -0.87
CD44-207ENST00000425428 ACOT4Q8N9L9 421 aa9.59□□□□□ -0.87
CD44-207ENST00000425428 MAELQ96JY0 434 aaKnown RBP9.59□□□□□ -0.87
CD44-207ENST00000425428 CTRCQ99895 268 aa9.59□□□□□ -0.87
CD44-207ENST00000425428 DPY30Q9C005 99 aa9.59□□□□□ -0.87
CD44-207ENST00000425428 KLHL31Q9H511 634 aa9.59□□□□□ -0.87
CD44-207ENST00000425428 DDX31Q9H8H2 851 aaKnown RBP9.59□□□□□ -0.87
CD44-207ENST00000425428 ATAD3AQ9NVI7 634 aa9.59□□□□□ -0.87
CD44-207ENST00000425428 SIRT5Q9NXA8 310 aa9.59□□□□□ -0.87
CD44-207ENST00000425428 SIDT1Q9NXL6 827 aaKnown RBP9.59□□□□□ -0.87
CD44-207ENST00000425428 POLR3HQ9Y535 204 aaPredicted RBP9.59□□□□□ -0.87
CD44-207ENST00000425428 PCDHGA8Q9Y5G5 932 aa9.59□□□□□ -0.87
CD44-207ENST00000425428 PTGDR2Q9Y5Y4 395 aa9.59□□□□□ -0.87
CD44-207ENST00000425428 AK5Q9Y6K8 562 aa9.59□□□□□ -0.87
CD44-207ENST00000425428 ADAMTS20P59510 1910 aa9.59□□□□□ -0.87
CD44-207ENST00000425428 PTPRBP23467 1997 aa9.59□□□□□ -0.88
CD44-207ENST00000425428 A0A0A6YYC8 382 aaPredicted RBP9.58□□□□□ -0.88
CD44-207ENST00000425428 A0A0G2JN53 185 aa9.58□□□□□ -0.88
CD44-207ENST00000425428 SYNDIG1LA6NDD5 238 aa9.58□□□□□ -0.88
CD44-207ENST00000425428 I3L1I5 382 aaPredicted RBP9.58□□□□□ -0.88
CD44-207ENST00000425428 GALR3O60755 368 aaPredicted RBP9.58□□□□□ -0.88
CD44-207ENST00000425428 TNFSF15O95150 251 aa9.58□□□□□ -0.88
CD44-207ENST00000425428 FAM58BPP0C7Q3 252 aa9.58□□□□□ -0.88
CD44-207ENST00000425428 CCL4P13236 92 aa9.58□□□□□ -0.88
CD44-207ENST00000425428 RNH1P13489 461 aaKnown RBP9.58□□□□□ -0.88
CD44-207ENST00000425428 CPN2P22792 545 aa9.58□□□□□ -0.88
CD44-207ENST00000425428 JAK1P23458 1154 aa9.58□□□□□ -0.88
CD44-207ENST00000425428 ATP5A1P25705 553 aaKnown RBP9.58□□□□□ -0.88
CD44-207ENST00000425428 PPP2R1BP30154 601 aa9.58□□□□□ -0.88
CD44-207ENST00000425428 PDX1P52945 283 aa9.58□□□□□ -0.88
CD44-207ENST00000425428 GABREP78334 506 aa9.58□□□□□ -0.88
CD44-207ENST00000425428 RFTN2Q52LD8 501 aaPredicted RBP9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms