RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 PRSS55Q6UWB4 352 aaPredicted RBP12.48□□□□□ -0.41
COL6A3-206ENST00000409809 ZNF598Q86UK7 904 aaKnown RBP12.48□□□□□ -0.41
COL6A3-206ENST00000409809 TMEM200AQ86VY9 491 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 AVL9Q8NBF6 648 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 CYP2W1Q8TAV3 490 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 ZNF668Q96K58 619 aaPredicted RBP12.48□□□□□ -0.41
COL6A3-206ENST00000409809 PIP5K1AQ99755 562 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 MEAF6Q9HAF1 191 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 VPS29Q9UBQ0 182 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 COL1A2P08123 1366 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 FAM86B1E9PN63 330 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 NRG1Q02297 640 aaPredicted RBP12.48□□□□□ -0.41
COL6A3-206ENST00000409809 ARHGAP1Q07960 439 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 UGT8Q16880 541 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 CDC42EP5Q6NZY7 148 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 FAM86B1Q8N7N1 296 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 OR56B4Q8NH76 319 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 PYCR2Q96C36 320 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 EBF4Q9BQW3 602 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 PIGMQ9H3S5 423 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 ZDHHC4Q9NPG8 344 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 FBXO7Q9Y3I1 522 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 POMCP01189 267 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 RFC2P35250 354 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 HCAR3P49019 387 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 TCEAL1Q15170 157 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 C16orf59Q7L2K0 433 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 MON1AQ86VX9 555 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 C7orf34Q96L11 122 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 TLE6Q9H808 572 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 TMEM100Q9NV29 134 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 FAM118AQ9NWS6 357 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 SLC15A5A6NIM6 579 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 TNFRSF10BO14763 440 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 HNRNPDQ14103 355 aaKnown RBP12.48□□□□□ -0.41
COL6A3-206ENST00000409809 OR52E8Q6IFG1 317 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 PGM2L1Q6PCE3 622 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 FAM122BQ7Z309 247 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 PHTF2Q8N3S3 785 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 CENPOQ9BU64 300 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 EMC7Q9NPA0 242 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 TEX10Q9NXF1 929 aaPredicted RBP12.48□□□□□ -0.41
COL6A3-206ENST00000409809 LCHNA4D1U4 455 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 GGT3PA6NGU5 568 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 MATN3O15232 486 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 GGT2P36268 569 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 HSD11B2P80365 405 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 MEP1AQ16819 746 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.48□□□□□ -0.41
COL6A3-206ENST00000409809 FAM156AQ8NDB6 213 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 OR2AP1Q8NGE2 309 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 ELMOD3Q96FG2 381 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 MUS81Q96NY9 551 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 MFSD1Q9H3U5 465 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 HIF3AQ9Y2N7 669 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 CACNG2Q9Y698 323 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 RIC1Q4ADV7 1423 aa12.48□□□□□ -0.41
COL6A3-206ENST00000409809 MYOM1P52179 1685 aa12.47□□□□□ -0.41
COL6A3-206ENST00000409809 A0A096LPI6 279 aa12.47□□□□□ -0.41
COL6A3-206ENST00000409809 RNF212BA8MTL3 300 aa12.47□□□□□ -0.41
COL6A3-206ENST00000409809 CACNB4O00305 520 aaPredicted RBP12.47□□□□□ -0.41
COL6A3-206ENST00000409809 IMPA2O14732 288 aa12.47□□□□□ -0.41
COL6A3-206ENST00000409809 PUM1Q14671 1186 aaKnown RBP eCLIP12.47□□□□□ -0.41
COL6A3-206ENST00000409809 SPIN3Q5JUX0 258 aa12.47□□□□□ -0.41
COL6A3-206ENST00000409809 KCTD18Q6PI47 426 aaPredicted RBP12.47□□□□□ -0.41
COL6A3-206ENST00000409809 BARD1Q99728 777 aaKnown RBP12.47□□□□□ -0.41
COL6A3-206ENST00000409809 PSD2Q9BQI7 771 aa12.47□□□□□ -0.41
COL6A3-206ENST00000409809 ZDHHC6Q9H6R6 413 aa12.47□□□□□ -0.41
COL6A3-206ENST00000409809 EBF1Q9UH73 591 aa12.47□□□□□ -0.41
COL6A3-206ENST00000409809 MEGF11A6BM72 1044 aa12.47□□□□□ -0.41
COL6A3-206ENST00000409809 SLC25A14O95258 325 aaPredicted RBP12.47□□□□□ -0.41
COL6A3-206ENST00000409809 RETP07949 1114 aa12.47□□□□□ -0.41
COL6A3-206ENST00000409809 OR8U9P0C7N5 309 aa12.47□□□□□ -0.41
COL6A3-206ENST00000409809 TFPIP10646 304 aa12.47□□□□□ -0.41
COL6A3-206ENST00000409809 TPMTP51580 245 aa12.47□□□□□ -0.41
COL6A3-206ENST00000409809 NPRL3Q12980 569 aa12.47□□□□□ -0.41
COL6A3-206ENST00000409809 GATA6Q92908 595 aa12.47□□□□□ -0.41
COL6A3-206ENST00000409809 NINJ1Q92982 152 aa12.47□□□□□ -0.41
COL6A3-206ENST00000409809 ACTRT3Q9BYD9 372 aa12.47□□□□□ -0.41
COL6A3-206ENST00000409809 VRTNQ9H8Y1 702 aa12.47□□□□□ -0.41
COL6A3-206ENST00000409809 TRAV19A0A0A6YYK7 116 aa12.47□□□□□ -0.41
COL6A3-206ENST00000409809 A0A1W2PS29 197 aa12.47□□□□□ -0.41
COL6A3-206ENST00000409809 TLR5O60602 858 aa12.47□□□□□ -0.41
COL6A3-206ENST00000409809 POU2F1P14859 743 aa12.47□□□□□ -0.41
COL6A3-206ENST00000409809 IRF4Q15306 451 aa12.47□□□□□ -0.41
COL6A3-206ENST00000409809 CYBRD1Q53TN4 286 aa12.47□□□□□ -0.41
COL6A3-206ENST00000409809 SYT14Q8NB59 555 aa12.47□□□□□ -0.41
COL6A3-206ENST00000409809 FCRL1Q96LA6 429 aa12.47□□□□□ -0.41
COL6A3-206ENST00000409809 TRIB3Q96RU7 358 aa12.47□□□□□ -0.41
COL6A3-206ENST00000409809 TEX264Q9Y6I9 313 aa12.47□□□□□ -0.41
COL6A3-206ENST00000409809 DUOX1Q9NRD9 1551 aa12.47□□□□□ -0.41
COL6A3-206ENST00000409809 RHOQP17081 205 aa12.47□□□□□ -0.41
COL6A3-206ENST00000409809 ETV3P41162 512 aa12.47□□□□□ -0.41
COL6A3-206ENST00000409809 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.47□□□□□ -0.41
COL6A3-206ENST00000409809 SMPDL3AQ92484 453 aa12.47□□□□□ -0.41
COL6A3-206ENST00000409809 MYOCQ99972 504 aa12.47□□□□□ -0.41
COL6A3-206ENST00000409809 MINDY3Q9H8M7 445 aa12.47□□□□□ -0.41
COL6A3-206ENST00000409809 C14orf119Q9NWQ9 140 aa12.47□□□□□ -0.41
COL6A3-206ENST00000409809 TMEM131LA2VDJ0 1609 aa12.47□□□□□ -0.41
COL6A3-206ENST00000409809 CDHR4A6H8M9 788 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms