RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 DENND2DQ9H6A0 471 aaPredicted RBP6.95□□□□□ -1.3
UPF2-203ENST00000397053 ZNF180Q9UJW8 692 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 FARSAQ9Y285 508 aaKnown RBP6.95□□□□□ -1.3
UPF2-203ENST00000397053 VSTM2BA6NLU5 285 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 PROM1O43490 865 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 SDC3O75056 442 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 CDH1P12830 882 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 PEPDP12955 493 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 CD40LGP29965 261 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 NTSR1P30989 418 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 TPTEP56180 551 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 RUNX2Q13950 521 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 GAS6Q14393 721 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 GRM7Q14831 915 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 EIF4HQ15056 248 aaKnown RBP6.95□□□□□ -1.3
UPF2-203ENST00000397053 SLC36A3Q495N2 470 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 SLC35F1Q5T1Q4 408 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 VTCN1Q7Z7D3 282 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 SYNPOQ8N3V7 929 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 VGLL2Q8N8G2 317 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 POGLUT1Q8NBL1 392 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 RBM15BQ8NDT2 890 aaKnown RBP6.95□□□□□ -1.3
UPF2-203ENST00000397053 CLEC4CQ8WTT0 213 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 TMEM203Q969S6 136 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 UBXN10Q96LJ8 280 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 CPEB1Q9BZB8 566 aaKnown RBP6.95□□□□□ -1.3
UPF2-203ENST00000397053 ST6GALNAC4Q9H4F1 302 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 ZNF442Q9H7R0 627 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 DYNLRB1Q9NP97 96 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 SPHK2Q9NRA0 654 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 TRPM1Q7Z4N2 1603 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 MTMR11A4FU01 709 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 TRIM64CA6NLI5 447 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 M0R036 132 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 SIX3O95343 332 aaPredicted RBP6.95□□□□□ -1.3
UPF2-203ENST00000397053 HAPLN1P10915 354 aaPredicted RBP6.95□□□□□ -1.3
UPF2-203ENST00000397053 ABOP16442 354 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 PGCP20142 388 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 HRH2P25021 359 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 GCH1P30793 250 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 RORCP51449 518 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 SNU13P55769 128 aaKnown RBP6.95□□□□□ -1.3
UPF2-203ENST00000397053 ELAVL3Q14576 367 aaKnown RBP6.95□□□□□ -1.3
UPF2-203ENST00000397053 NPTX1Q15818 432 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 STK11Q15831 433 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 DPYSL2Q16555 572 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 RALGPS1Q5JS13 557 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 GLT8D1Q68CQ7 371 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 FRMD7Q6ZUT3 714 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 LANCL3Q6ZV70 420 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 KCTD9Q7L273 389 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 ASPGQ86U10 573 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 SNX29P2Q8IUI4 249 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 OR8K3Q8NH51 312 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 C9orf43Q8TAL5 461 aaPredicted RBP6.95□□□□□ -1.3
UPF2-203ENST00000397053 PROKR1Q8TCW9 393 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 FAXDC2Q96IV6 333 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 URM1Q9BTM9 101 aaKnown RBP6.95□□□□□ -1.3
UPF2-203ENST00000397053 NKX2-4Q9H2Z4 354 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 GALPQ9UBC7 116 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 IL20RAQ9UHF4 553 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 GPR160Q9UJ42 338 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 CLEC4EQ9ULY5 219 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 TELO2Q9Y4R8 837 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 A0A0G2JMP0 313 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 EME2A4GXA9 379 aaPredicted RBP6.95□□□□□ -1.3
UPF2-203ENST00000397053 HHLA1C9JL84 531 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 POLR1CO15160 346 aaPredicted RBP6.95□□□□□ -1.3
UPF2-203ENST00000397053 NOBOXO60393 691 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 ENTPD6O75354 484 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 DIRAS3O95661 229 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 HLA-DPB1P04440 258 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 GABRA3P34903 492 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 GGT5P36269 586 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 SOX2P48431 317 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 RPL26P61254 145 aaKnown RBP6.95□□□□□ -1.3
UPF2-203ENST00000397053 RPS13P62277 151 aaKnown RBP6.95□□□□□ -1.3
UPF2-203ENST00000397053 PSPHP78330 225 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 SEC23BQ15437 767 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 NSDHLQ15738 373 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 CILP2Q8IUL8 1156 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 ELMOD2Q8IZ81 293 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 CLEC1AQ8NC01 280 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 OR4M2Q8NGB6 313 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 SHKBP1Q8TBC3 707 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 TMEM209Q96SK2 561 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 MROQ9BYG7 248 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 SLC29A3Q9BZD2 475 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 NUFIP1Q9UHK0 495 aaKnown RBP6.95□□□□□ -1.3
UPF2-203ENST00000397053 TET3O43151 1660 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 LOC102723532A0A0G2JNH3 316 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 TTC24A2A3L6 582 aaPredicted RBP6.95□□□□□ -1.3
UPF2-203ENST00000397053 C2orf72A6NCS6 295 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 B8ZZF3 427 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 SMAD9O15198 467 aaKnown RBP6.95□□□□□ -1.3
UPF2-203ENST00000397053 LPLP06858 475 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 IFNGR1P15260 489 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 SLC9A3P48764 834 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 ACY1Q03154 408 aa6.95□□□□□ -1.3
UPF2-203ENST00000397053 EFR3AQ14156 821 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms