RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 ACPTQ9BZG2 426 aa20.99■□□□□ 0.95
SHMT1-203ENST00000354098 TUBB1Q9H4B7 451 aa20.99■□□□□ 0.95
SHMT1-203ENST00000354098 BRF2Q9HAW0 419 aa20.99■□□□□ 0.95
SHMT1-203ENST00000354098 CTSFQ9UBX1 484 aa20.99■□□□□ 0.95
SHMT1-203ENST00000354098 SEC16AO15027 2179 aa20.99■□□□□ 0.95
SHMT1-203ENST00000354098 SNNO75324 88 aaPredicted RBP20.98■□□□□ 0.95
SHMT1-203ENST00000354098 LIFP15018 202 aa20.98■□□□□ 0.95
SHMT1-203ENST00000354098 HMGCS1Q01581 520 aa20.98■□□□□ 0.95
SHMT1-203ENST00000354098 MRPL14Q6P1L8 145 aaKnown RBP20.98■□□□□ 0.95
SHMT1-203ENST00000354098 OVCH1Q7RTY7 1134 aa20.98■□□□□ 0.95
SHMT1-203ENST00000354098 TRIM42Q8IWZ5 723 aa20.98■□□□□ 0.95
SHMT1-203ENST00000354098 RAB3IL1Q8TBN0 382 aa20.98■□□□□ 0.95
SHMT1-203ENST00000354098 DYDC1Q8WWB3 177 aa20.98■□□□□ 0.95
SHMT1-203ENST00000354098 RGMAQ96B86 450 aa20.98■□□□□ 0.95
SHMT1-203ENST00000354098 KCNC2Q96PR1 638 aa20.98■□□□□ 0.95
SHMT1-203ENST00000354098 ZNF717Q9BY31 904 aaPredicted RBP20.98■□□□□ 0.95
SHMT1-203ENST00000354098 TRPC4Q9UBN4 977 aa20.98■□□□□ 0.95
SHMT1-203ENST00000354098 IL17BQ9UHF5 180 aa20.98■□□□□ 0.95
SHMT1-203ENST00000354098 DMXL2Q8TDJ6 3036 aa20.98■□□□□ 0.95
SHMT1-203ENST00000354098 PIM1P11309 404 aaPredicted RBP20.97■□□□□ 0.95
SHMT1-203ENST00000354098 CERS1P27544 350 aa20.97■□□□□ 0.95
SHMT1-203ENST00000354098 RAP1GDS1P52306 607 aa20.97■□□□□ 0.95
SHMT1-203ENST00000354098 RPS18P62269 152 aaKnown RBP20.97■□□□□ 0.95
SHMT1-203ENST00000354098 DNASE1L3Q13609 305 aa20.97■□□□□ 0.95
SHMT1-203ENST00000354098 NCF4Q15080 339 aa20.97■□□□□ 0.95
SHMT1-203ENST00000354098 ATG16L1Q676U5 607 aa20.97■□□□□ 0.95
SHMT1-203ENST00000354098 OR4C11Q6IEV9 310 aa20.97■□□□□ 0.95
SHMT1-203ENST00000354098 ENDOVQ8N8Q3 282 aaKnown RBP20.97■□□□□ 0.95
SHMT1-203ENST00000354098 SRFBP1Q8NEF9 429 aaKnown RBP20.97■□□□□ 0.95
SHMT1-203ENST00000354098 TBCDQ9BTW9 1192 aa20.97■□□□□ 0.95
SHMT1-203ENST00000354098 DPH1Q9BZG8 443 aa20.97■□□□□ 0.95
SHMT1-203ENST00000354098 ILKAPQ9H0C8 392 aaPredicted RBP20.97■□□□□ 0.95
SHMT1-203ENST00000354098 GPN2Q9H9Y4 310 aaPredicted RBP20.97■□□□□ 0.95
SHMT1-203ENST00000354098 RAP2CQ9Y3L5 183 aa20.97■□□□□ 0.95
SHMT1-203ENST00000354098 MAP4K5Q9Y4K4 846 aa20.97■□□□□ 0.95
SHMT1-203ENST00000354098 MRPS18BQ9Y676 258 aaKnown RBP20.97■□□□□ 0.95
SHMT1-203ENST00000354098 C9J4A7 227 aa20.96■□□□□ 0.95
SHMT1-203ENST00000354098 TGM3Q08188 693 aa20.96■□□□□ 0.95
SHMT1-203ENST00000354098 CSTF3Q12996 717 aaKnown RBP20.96■□□□□ 0.95
SHMT1-203ENST00000354098 RUNX2Q13950 521 aa20.96■□□□□ 0.95
SHMT1-203ENST00000354098 VWA2Q5GFL6 755 aa20.96■□□□□ 0.95
SHMT1-203ENST00000354098 KDF1Q8NAX2 398 aaPredicted RBP20.96■□□□□ 0.95
SHMT1-203ENST00000354098 OR51Q1Q8NH59 317 aa20.96■□□□□ 0.95
SHMT1-203ENST00000354098 TWIST2Q8WVJ9 160 aa20.96■□□□□ 0.95
SHMT1-203ENST00000354098 CENPKQ9BS16 269 aa20.96■□□□□ 0.95
SHMT1-203ENST00000354098 PNPOQ9NVS9 261 aa20.96■□□□□ 0.95
SHMT1-203ENST00000354098 THAP1Q9NVV9 213 aa20.96■□□□□ 0.95
SHMT1-203ENST00000354098 VPS29Q9UBQ0 182 aa20.96■□□□□ 0.95
SHMT1-203ENST00000354098 GPN3Q9UHW5 284 aaPredicted RBP20.96■□□□□ 0.95
SHMT1-203ENST00000354098 SERTM1A2A2V5 107 aa20.96■□□□□ 0.95
SHMT1-203ENST00000354098 KLF11O14901 512 aa20.96■□□□□ 0.95
SHMT1-203ENST00000354098 CHST10O43529 356 aa20.96■□□□□ 0.95
SHMT1-203ENST00000354098 LINC00032P0C843 101 aa20.96■□□□□ 0.95
SHMT1-203ENST00000354098 HSD3B1P14060 373 aa20.96■□□□□ 0.95
SHMT1-203ENST00000354098 WT1P19544 449 aaPredicted RBP20.96■□□□□ 0.95
SHMT1-203ENST00000354098 ATP5A1P25705 553 aaKnown RBP20.96■□□□□ 0.95
SHMT1-203ENST00000354098 HSD3B2P26439 372 aa20.96■□□□□ 0.95
SHMT1-203ENST00000354098 BSGP35613 385 aa20.96■□□□□ 0.95
SHMT1-203ENST00000354098 SSR2P43308 183 aa20.96■□□□□ 0.95
SHMT1-203ENST00000354098 MTTPP55157 894 aa20.96■□□□□ 0.95
SHMT1-203ENST00000354098 ZNF33BQ06732 778 aa20.96■□□□□ 0.95
SHMT1-203ENST00000354098 TBL3Q12788 808 aaKnown RBP20.96■□□□□ 0.95
SHMT1-203ENST00000354098 NKG7Q16617 165 aa20.96■□□□□ 0.95
SHMT1-203ENST00000354098 AP5B1Q2VPB7 878 aa20.96■□□□□ 0.95
SHMT1-203ENST00000354098 SHISA6Q6ZSJ9 500 aa20.96■□□□□ 0.95
SHMT1-203ENST00000354098 TRIM46Q7Z4K8 759 aa20.96■□□□□ 0.95
SHMT1-203ENST00000354098 SPACA3Q8IXA5 215 aa20.96■□□□□ 0.95
SHMT1-203ENST00000354098 GBP7Q8N8V2 638 aaPredicted RBP20.96■□□□□ 0.95
SHMT1-203ENST00000354098 ACOT4Q8N9L9 421 aa20.96■□□□□ 0.95
SHMT1-203ENST00000354098 SERINC2Q96SA4 455 aa20.96■□□□□ 0.95
SHMT1-203ENST00000354098 COPS7BQ9H9Q2 264 aaPredicted RBP20.96■□□□□ 0.95
SHMT1-203ENST00000354098 ZNF282Q9UDV7 671 aaPredicted RBP20.96■□□□□ 0.95
SHMT1-203ENST00000354098 FARSAQ9Y285 508 aaKnown RBP20.96■□□□□ 0.95
SHMT1-203ENST00000354098 EPB41L3Q9Y2J2 1087 aaPredicted RBP20.96■□□□□ 0.95
SHMT1-203ENST00000354098 TMEM8BA6NDV4 472 aa20.95■□□□□ 0.94
SHMT1-203ENST00000354098 C21orf140B9A014 251 aa20.95■□□□□ 0.94
SHMT1-203ENST00000354098 EEDO75530 441 aaKnown RBP20.95■□□□□ 0.94
SHMT1-203ENST00000354098 JRKO75564 520 aa20.95■□□□□ 0.94
SHMT1-203ENST00000354098 KLF7O75840 302 aaPredicted RBP20.95■□□□□ 0.94
SHMT1-203ENST00000354098 SEMA3DO95025 777 aa20.95■□□□□ 0.94
SHMT1-203ENST00000354098 GBAP04062 536 aa20.95■□□□□ 0.94
SHMT1-203ENST00000354098 RAB40ALP0C0E4 278 aa20.95■□□□□ 0.94
SHMT1-203ENST00000354098 HIST1H1TP22492 207 aaPredicted RBP20.95■□□□□ 0.94
SHMT1-203ENST00000354098 SKP1P63208 163 aa20.95■□□□□ 0.94
SHMT1-203ENST00000354098 OCRLQ01968 901 aa20.95■□□□□ 0.94
SHMT1-203ENST00000354098 ERV3-1Q14264 604 aa20.95■□□□□ 0.94
SHMT1-203ENST00000354098 NIPAL1Q6NVV3 410 aa20.95■□□□□ 0.94
SHMT1-203ENST00000354098 PRSS58Q8IYP2 241 aa20.95■□□□□ 0.94
SHMT1-203ENST00000354098 CA13Q8N1Q1 262 aa20.95■□□□□ 0.94
SHMT1-203ENST00000354098 STT3BQ8TCJ2 826 aa20.95■□□□□ 0.94
SHMT1-203ENST00000354098 CKAP2Q8WWK9 683 aa20.95■□□□□ 0.94
SHMT1-203ENST00000354098 KIAA1143Q96AT1 154 aaPredicted RBP20.95■□□□□ 0.94
SHMT1-203ENST00000354098 FKBP10Q96AY3 582 aa20.95■□□□□ 0.94
SHMT1-203ENST00000354098 PEX11GQ96HA9 241 aa20.95■□□□□ 0.94
SHMT1-203ENST00000354098 SLC26A1Q9H2B4 701 aa20.95■□□□□ 0.94
SHMT1-203ENST00000354098 HAO1Q9UJM8 370 aa20.95■□□□□ 0.94
SHMT1-203ENST00000354098 CCL27Q9Y4X3 112 aa20.95■□□□□ 0.94
SHMT1-203ENST00000354098 LAMA5O15230 3695 aa20.95■□□□□ 0.94
SHMT1-203ENST00000354098 IGLV3-12A0A075B6K2 115 aa20.94■□□□□ 0.94
SHMT1-203ENST00000354098 A0A088AWK7 358 aa20.94■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms