RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 DCDC5Q6ZRR9 648 aa15.92■□□□□ 0.14
VPS54-201ENST00000272322 TSEN54Q7Z6J9 526 aaKnown RBP15.92■□□□□ 0.14
VPS54-201ENST00000272322 CCDC103Q8IW40 242 aa15.92■□□□□ 0.14
VPS54-201ENST00000272322 C7orf34Q96L11 122 aa15.92■□□□□ 0.14
VPS54-201ENST00000272322 CHCHD6Q9BRQ6 235 aa15.92■□□□□ 0.14
VPS54-201ENST00000272322 DOHHQ9BU89 302 aa15.92■□□□□ 0.14
VPS54-201ENST00000272322 PRR14Q9BWN1 585 aa15.92■□□□□ 0.14
VPS54-201ENST00000272322 MAGIXQ9H6Y5 334 aa15.92■□□□□ 0.14
VPS54-201ENST00000272322 CDH7Q9ULB5 785 aa15.92■□□□□ 0.14
VPS54-201ENST00000272322 RNF6Q9Y252 685 aa15.92■□□□□ 0.14
VPS54-201ENST00000272322 SMIM30A4D0T7 59 aa15.92■□□□□ 0.14
VPS54-201ENST00000272322 GNRH1P01148 92 aa15.92■□□□□ 0.14
VPS54-201ENST00000272322 C9P02748 559 aa15.92■□□□□ 0.14
VPS54-201ENST00000272322 C8orf89P0DMQ9 161 aa15.92■□□□□ 0.14
VPS54-201ENST00000272322 HOXB9P17482 250 aaPredicted RBP15.92■□□□□ 0.14
VPS54-201ENST00000272322 MANFP55145 182 aaKnown RBP15.92■□□□□ 0.14
VPS54-201ENST00000272322 LSM11P83369 360 aaKnown RBP eCLIP15.92■□□□□ 0.142e-7■□□□□ 8
VPS54-201ENST00000272322 HIST2H2ACQ16777 129 aaPredicted RBP15.92■□□□□ 0.14
VPS54-201ENST00000272322 HIST2H2AA3Q6FI13 130 aa15.92■□□□□ 0.14
VPS54-201ENST00000272322 FAM9CQ8IZT9 166 aa15.92■□□□□ 0.14
VPS54-201ENST00000272322 CHTF18Q8WVB6 975 aa15.92■□□□□ 0.14
VPS54-201ENST00000272322 CEP44Q9C0F1 390 aa15.92■□□□□ 0.14
VPS54-201ENST00000272322 REEP4Q9H6H4 257 aa15.92■□□□□ 0.14
VPS54-201ENST00000272322 CCDC177Q9NQR7 707 aaPredicted RBP15.92■□□□□ 0.14
VPS54-201ENST00000272322 IMP3Q9NV31 184 aaKnown RBP15.92■□□□□ 0.14
VPS54-201ENST00000272322 TMEM45AQ9NWC5 275 aa15.92■□□□□ 0.14
VPS54-201ENST00000272322 TRPC4Q9UBN4 977 aa15.92■□□□□ 0.14
VPS54-201ENST00000272322 ENPP5Q9UJA9 477 aa15.92■□□□□ 0.14
VPS54-201ENST00000272322 TRANK1O15050 2925 aa15.92■□□□□ 0.14
VPS54-201ENST00000272322 SLC16A6O15403 523 aa15.92■□□□□ 0.14
VPS54-201ENST00000272322 ERAL1O75616 437 aaKnown RBP15.92■□□□□ 0.14
VPS54-201ENST00000272322 ZNF77Q15935 545 aa15.92■□□□□ 0.14
VPS54-201ENST00000272322 TMIGD1Q6UXZ0 262 aa15.92■□□□□ 0.14
VPS54-201ENST00000272322 OR9A1PQ8NGU1 263 aa15.92■□□□□ 0.14
VPS54-201ENST00000272322 SLC5A11Q8WWX8 675 aa15.92■□□□□ 0.14
VPS54-201ENST00000272322 SMG7Q92540 1137 aaKnown RBP15.92■□□□□ 0.14
VPS54-201ENST00000272322 TFGQ92734 400 aaPredicted RBP15.92■□□□□ 0.14
VPS54-201ENST00000272322 SH3YL1Q96HL8 342 aaPredicted RBP15.92■□□□□ 0.14
VPS54-201ENST00000272322 TOX2Q96NM4 488 aa15.92■□□□□ 0.14
VPS54-201ENST00000272322 EXOSC4Q9NPD3 245 aaKnown RBP15.92■□□□□ 0.14
VPS54-201ENST00000272322 DUSP12Q9UNI6 340 aa15.92■□□□□ 0.14
VPS54-201ENST00000272322 IGLON5A6NGN9 336 aa15.91■□□□□ 0.14
VPS54-201ENST00000272322 H0YIV9 168 aa15.91■□□□□ 0.14
VPS54-201ENST00000272322 C1GALT1C1LP0DN25 315 aa15.91■□□□□ 0.14
VPS54-201ENST00000272322 PTPN5P54829 565 aa15.91■□□□□ 0.14
VPS54-201ENST00000272322 SLC13A2Q13183 592 aa15.91■□□□□ 0.14
VPS54-201ENST00000272322 MED22Q15528 200 aa15.91■□□□□ 0.14
VPS54-201ENST00000272322 CEACAM20Q6UY09 585 aa15.91■□□□□ 0.14
VPS54-201ENST00000272322 HEATR4Q86WZ0 1026 aa15.91■□□□□ 0.14
VPS54-201ENST00000272322 SYNPOQ8N3V7 929 aa15.91■□□□□ 0.14
VPS54-201ENST00000272322 OR5D16Q8NGK9 328 aa15.91■□□□□ 0.14
VPS54-201ENST00000272322 XAGE5Q8WWM1 108 aa15.91■□□□□ 0.14
VPS54-201ENST00000272322 HTRA1Q92743 480 aa15.91■□□□□ 0.14
VPS54-201ENST00000272322 ZHX1-C8orf76Q96EF9 292 aa15.91■□□□□ 0.14
VPS54-201ENST00000272322 WFDC6Q9BQY6 131 aa15.91■□□□□ 0.14
VPS54-201ENST00000272322 ACOT13Q9NPJ3 140 aa15.91■□□□□ 0.14
VPS54-201ENST00000272322 KCNK6Q9Y257 313 aa15.91■□□□□ 0.14
VPS54-201ENST00000272322 PCDHGA6Q9Y5G7 932 aa15.91■□□□□ 0.14
VPS54-201ENST00000272322 SOD1P00441 154 aa15.91■□□□□ 0.14
VPS54-201ENST00000272322 MAGEA2P43356 314 aa15.91■□□□□ 0.14
VPS54-201ENST00000272322 RGS21Q2M5E4 152 aa15.91■□□□□ 0.14
VPS54-201ENST00000272322 ZNF750Q32MQ0 723 aa15.91■□□□□ 0.14
VPS54-201ENST00000272322 RFX4Q33E94 735 aa15.91■□□□□ 0.14
VPS54-201ENST00000272322 GCNT6Q5T4J0 391 aa15.91■□□□□ 0.14
VPS54-201ENST00000272322 GET4Q7L5D6 327 aaPredicted RBP15.91■□□□□ 0.14
VPS54-201ENST00000272322 WDR53Q7Z5U6 358 aaPredicted RBP15.91■□□□□ 0.14
VPS54-201ENST00000272322 STX19Q8N4C7 294 aa15.91■□□□□ 0.14
VPS54-201ENST00000272322 PHF10Q8WUB8 498 aaKnown RBP15.91■□□□□ 0.14
VPS54-201ENST00000272322 LGALS12Q96DT0 336 aa15.91■□□□□ 0.14
VPS54-201ENST00000272322 DTD2Q96FN9 168 aa15.91■□□□□ 0.14
VPS54-201ENST00000272322 TUBA1CQ9BQE3 449 aa15.91■□□□□ 0.14
VPS54-201ENST00000272322 KCNK12Q9HB15 430 aa15.91■□□□□ 0.14
VPS54-201ENST00000272322 DMRT3Q9NQL9 472 aa15.91■□□□□ 0.14
VPS54-201ENST00000272322 DEC1Q9P2X7 70 aa15.91■□□□□ 0.14
VPS54-201ENST00000272322 PLEKHM1Q9Y4G2 1056 aa15.91■□□□□ 0.14
VPS54-201ENST00000272322 LYVE1Q9Y5Y7 322 aa15.91■□□□□ 0.14
VPS54-201ENST00000272322 TRBC2A0A5B9 178 aa15.91■□□□□ 0.14
VPS54-201ENST00000272322 H3BN98 237 aa15.91■□□□□ 0.14
VPS54-201ENST00000272322 FGBP02675 491 aa15.91■□□□□ 0.14
VPS54-201ENST00000272322 HOXB3P14651 431 aaPredicted RBP15.91■□□□□ 0.14
VPS54-201ENST00000272322 CLCNKAP51800 687 aa15.91■□□□□ 0.14
VPS54-201ENST00000272322 GRSF1Q12849 480 aaKnown RBP eCLIP15.91■□□□□ 0.14
VPS54-201ENST00000272322 ZDHHC20Q5W0Z9 365 aa15.91■□□□□ 0.14
VPS54-201ENST00000272322 TTC23LQ6PF05 361 aa15.91■□□□□ 0.14
VPS54-201ENST00000272322 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP15.91■□□□□ 0.14
VPS54-201ENST00000272322 DGLUCYQ7Z3D6 616 aa15.91■□□□□ 0.14
VPS54-201ENST00000272322 OR56A3Q8NH54 315 aa15.91■□□□□ 0.14
VPS54-201ENST00000272322 TBC1D14Q9P2M4 693 aa15.91■□□□□ 0.14
VPS54-201ENST00000272322 PCDHGB3Q9Y5G1 929 aa15.91■□□□□ 0.14
VPS54-201ENST00000272322 HEPACAM2A8MVW5 462 aa15.9■□□□□ 0.14
VPS54-201ENST00000272322 ACP5P13686 325 aa15.9■□□□□ 0.14
VPS54-201ENST00000272322 SELENOWP63302 87 aa15.9■□□□□ 0.14
VPS54-201ENST00000272322 SMU1Q2TAY7 513 aa15.9■□□□□ 0.14
VPS54-201ENST00000272322 RD3Q7Z3Z2 195 aa15.9■□□□□ 0.14
VPS54-201ENST00000272322 CROCCP3Q8IVE0 287 aa15.9■□□□□ 0.14
VPS54-201ENST00000272322 AQP11Q8NBQ7 271 aa15.9■□□□□ 0.14
VPS54-201ENST00000272322 COX4I2Q96KJ9 171 aa15.9■□□□□ 0.14
VPS54-201ENST00000272322 FZD3Q9NPG1 666 aa15.9■□□□□ 0.14
VPS54-201ENST00000272322 CAB39Q9Y376 341 aaPredicted RBP15.9■□□□□ 0.14
VPS54-201ENST00000272322 CACNA1IQ9P0X4 2223 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms