RNA–Protein interactions for RNA: ENST00000225964.9

COL1A1-201, Transcript of collagen type I alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL1A1, Length 6,727 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-201ENST00000225964 GMEB1Q9Y692 573 aa12.79□□□□□ -0.36
COL1A1-201ENST00000225964 FXYD6-FXYD2A0A087WZ82 144 aa12.79□□□□□ -0.36
COL1A1-201ENST00000225964 A0A1B0GVC2 190 aa12.79□□□□□ -0.36
COL1A1-201ENST00000225964 SMCO3A2RU48 225 aa12.79□□□□□ -0.36
COL1A1-201ENST00000225964 A6NLC8 198 aa12.79□□□□□ -0.36
COL1A1-201ENST00000225964 H7BY64 318 aa12.79□□□□□ -0.36
COL1A1-201ENST00000225964 COCHO43405 550 aa12.79□□□□□ -0.36
COL1A1-201ENST00000225964 PRKD3O94806 890 aa12.79□□□□□ -0.36
COL1A1-201ENST00000225964 DIRAS1O95057 198 aa12.79□□□□□ -0.36
COL1A1-201ENST00000225964 RGS19P49795 217 aa12.79□□□□□ -0.36
COL1A1-201ENST00000225964 DEFA5Q01523 94 aa12.79□□□□□ -0.36
COL1A1-201ENST00000225964 SMYD5Q6GMV2 418 aa12.79□□□□□ -0.36
COL1A1-201ENST00000225964 ARSKQ6UWY0 536 aa12.79□□□□□ -0.36
COL1A1-201ENST00000225964 ASPGQ86U10 573 aa12.79□□□□□ -0.36
COL1A1-201ENST00000225964 NPAS3Q8IXF0 933 aa12.79□□□□□ -0.36
COL1A1-201ENST00000225964 CCDC116Q8IYX3 515 aa12.79□□□□□ -0.36
COL1A1-201ENST00000225964 DCAF4L2Q8NA75 395 aa12.79□□□□□ -0.36
COL1A1-201ENST00000225964 TMBIM1Q969X1 311 aa12.79□□□□□ -0.36
COL1A1-201ENST00000225964 PRAP1Q96NZ9 151 aa12.79□□□□□ -0.36
COL1A1-201ENST00000225964 G6PC3Q9BUM1 346 aa12.79□□□□□ -0.36
COL1A1-201ENST00000225964 FXYD6Q9H0Q3 95 aa12.79□□□□□ -0.36
COL1A1-201ENST00000225964 MINDY3Q9H8M7 445 aa12.79□□□□□ -0.36
COL1A1-201ENST00000225964 SPHK2Q9NRA0 654 aa12.79□□□□□ -0.36
COL1A1-201ENST00000225964 PARP4Q9UKK3 1724 aaKnown RBP12.79□□□□□ -0.36
COL1A1-201ENST00000225964 M0R129 80 aa12.79□□□□□ -0.36
COL1A1-201ENST00000225964 CAPN5O15484 640 aaPredicted RBP12.79□□□□□ -0.36
COL1A1-201ENST00000225964 ETV3P41162 512 aa12.79□□□□□ -0.36
COL1A1-201ENST00000225964 RPS3AP61247 264 aaKnown RBP12.79□□□□□ -0.36
COL1A1-201ENST00000225964 BLMHQ13867 455 aa12.79□□□□□ -0.36
COL1A1-201ENST00000225964 RBM20Q5T481 1227 aaKnown RBP12.79□□□□□ -0.36
COL1A1-201ENST00000225964 ZNF709Q8N972 641 aa12.79□□□□□ -0.36
COL1A1-201ENST00000225964 SHKBP1Q8TBC3 707 aa12.79□□□□□ -0.36
COL1A1-201ENST00000225964 STON2Q8WXE9 905 aa12.79□□□□□ -0.36
COL1A1-201ENST00000225964 OSTF1Q92882 214 aa12.79□□□□□ -0.36
COL1A1-201ENST00000225964 CGREF1Q99674 301 aa12.79□□□□□ -0.36
COL1A1-201ENST00000225964 TREM1Q9NP99 234 aa12.79□□□□□ -0.36
COL1A1-201ENST00000225964 FZD3Q9NPG1 666 aa12.79□□□□□ -0.36
COL1A1-201ENST00000225964 NLE1Q9NVX2 485 aaPredicted RBP12.79□□□□□ -0.36
COL1A1-201ENST00000225964 RNF186Q9NXI6 227 aa12.79□□□□□ -0.36
COL1A1-201ENST00000225964 B4GALT6Q9UBX8 382 aa12.79□□□□□ -0.36
COL1A1-201ENST00000225964 PRODH2Q9UF12 536 aa12.79□□□□□ -0.36
COL1A1-201ENST00000225964 MRC1P22897 1456 aa12.78□□□□□ -0.36
COL1A1-201ENST00000225964 hCG_1807616A0A1W2PRN6 198 aa12.78□□□□□ -0.36
COL1A1-201ENST00000225964 TLX2O43763 284 aaPredicted RBP12.78□□□□□ -0.36
COL1A1-201ENST00000225964 H2BFMP0C1H6 154 aa12.78□□□□□ -0.36
COL1A1-201ENST00000225964 NUDT6P53370 316 aa12.78□□□□□ -0.36
COL1A1-201ENST00000225964 PLCXD2Q0VAA5 305 aa12.78□□□□□ -0.36
COL1A1-201ENST00000225964 SEC23BQ15437 767 aa12.78□□□□□ -0.36
COL1A1-201ENST00000225964 ZNF542PQ5EBM4 170 aa12.78□□□□□ -0.36
COL1A1-201ENST00000225964 RNF111Q6ZNA4 994 aa12.78□□□□□ -0.36
COL1A1-201ENST00000225964 NAT8LQ8N9F0 302 aa12.78□□□□□ -0.36
COL1A1-201ENST00000225964 PXYLP1Q8TE99 480 aa12.78□□□□□ -0.36
COL1A1-201ENST00000225964 HSH2DQ96JZ2 352 aa12.78□□□□□ -0.36
COL1A1-201ENST00000225964 OR10A4Q9H209 315 aa12.78□□□□□ -0.36
COL1A1-201ENST00000225964 NUP50Q9UKX7 468 aa12.78□□□□□ -0.36
COL1A1-201ENST00000225964 PCDHGA10Q9Y5H3 936 aa12.78□□□□□ -0.36
COL1A1-201ENST00000225964 HRGP04196 525 aa12.78□□□□□ -0.36
COL1A1-201ENST00000225964 RPS15P62841 145 aaKnown RBP12.78□□□□□ -0.36
COL1A1-201ENST00000225964 PTPRCAPQ14761 206 aa12.78□□□□□ -0.36
COL1A1-201ENST00000225964 PON2Q15165 354 aa12.78□□□□□ -0.36
COL1A1-201ENST00000225964 OR2T5Q6IEZ7 315 aa12.78□□□□□ -0.36
COL1A1-201ENST00000225964 OR2T29Q8NH02 315 aa12.78□□□□□ -0.36
COL1A1-201ENST00000225964 WDR92Q96MX6 357 aa12.78□□□□□ -0.36
COL1A1-201ENST00000225964 DERL2Q9GZP9 239 aa12.78□□□□□ -0.36
COL1A1-201ENST00000225964 POMPQ9Y244 141 aa12.78□□□□□ -0.36
COL1A1-201ENST00000225964 PCDHGA2Q9Y5H1 932 aa12.78□□□□□ -0.36
COL1A1-201ENST00000225964 ADGRB2O60241 1585 aa12.78□□□□□ -0.36
COL1A1-201ENST00000225964 CXorf49A8MYA2 514 aaPredicted RBP12.78□□□□□ -0.36
COL1A1-201ENST00000225964 CNTN5O94779 1100 aa12.78□□□□□ -0.36
COL1A1-201ENST00000225964 MLC1Q15049 377 aa12.78□□□□□ -0.36
COL1A1-201ENST00000225964 FAM214AQ32MH5 1076 aa12.78□□□□□ -0.36
COL1A1-201ENST00000225964 DRICH1Q6PGQ1 229 aaPredicted RBP12.78□□□□□ -0.36
COL1A1-201ENST00000225964 C9orf43Q8TAL5 461 aaPredicted RBP12.78□□□□□ -0.36
COL1A1-201ENST00000225964 NAA11Q9BSU3 229 aaPredicted RBP12.78□□□□□ -0.36
COL1A1-201ENST00000225964 C3P01024 1663 aa12.78□□□□□ -0.36
COL1A1-201ENST00000225964 TMEM63AO94886 807 aa12.78□□□□□ -0.36
COL1A1-201ENST00000225964 OXTRP30559 389 aa12.78□□□□□ -0.36
COL1A1-201ENST00000225964 CDH11P55287 796 aa12.78□□□□□ -0.36
COL1A1-201ENST00000225964 MERTKQ12866 999 aa12.78□□□□□ -0.36
COL1A1-201ENST00000225964 RUNDC3AQ59EK9 446 aa12.78□□□□□ -0.36
COL1A1-201ENST00000225964 ZNF550Q7Z398 422 aa12.78□□□□□ -0.36
COL1A1-201ENST00000225964 ZER1Q7Z7L7 766 aa12.78□□□□□ -0.36
COL1A1-201ENST00000225964 ZNF461Q8TAF7 563 aa12.78□□□□□ -0.36
COL1A1-201ENST00000225964 LOC100130705A0A1B0GUX0 176 aa12.78□□□□□ -0.36
COL1A1-201ENST00000225964 OTOL1A6NHN0 477 aaPredicted RBP12.78□□□□□ -0.36
COL1A1-201ENST00000225964 HEPACAM2A8MVW5 462 aa12.78□□□□□ -0.36
COL1A1-201ENST00000225964 FASLGP48023 281 aa12.78□□□□□ -0.36
COL1A1-201ENST00000225964 GBX1Q14549 363 aa12.78□□□□□ -0.36
COL1A1-201ENST00000225964 RAB12Q6IQ22 244 aa12.78□□□□□ -0.36
COL1A1-201ENST00000225964 RPS27LQ71UM5 84 aaKnown RBP12.78□□□□□ -0.36
COL1A1-201ENST00000225964 LIX1LQ8IVB5 337 aa12.78□□□□□ -0.36
COL1A1-201ENST00000225964 GALNT15Q8N3T1 639 aa12.78□□□□□ -0.36
COL1A1-201ENST00000225964 SMARCD2Q92925 531 aa12.78□□□□□ -0.36
COL1A1-201ENST00000225964 ZNF641Q96N77 438 aaPredicted RBP12.78□□□□□ -0.36
COL1A1-201ENST00000225964 KCNA7Q96RP8 456 aa12.78□□□□□ -0.36
COL1A1-201ENST00000225964 SALL4Q9UJQ4 1053 aa12.78□□□□□ -0.36
COL1A1-201ENST00000225964 ATF6P18850 670 aa12.77□□□□□ -0.36
COL1A1-201ENST00000225964 GPR17Q13304 367 aa12.77□□□□□ -0.36
COL1A1-201ENST00000225964 NNATQ16517 81 aa12.77□□□□□ -0.36
COL1A1-201ENST00000225964 TMEM80Q96HE8 168 aa12.77□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms