RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 HOXD12P35452 270 aa19.15■□□□□ 0.66
CLN3-250ENST00000636839 OR4C11Q6IEV9 310 aa19.15■□□□□ 0.66
CLN3-250ENST00000636839 ABHD17CQ6PCB6 329 aa19.15■□□□□ 0.66
CLN3-250ENST00000636839 KLHL35Q6PF15 583 aa19.15■□□□□ 0.66
CLN3-250ENST00000636839 DLEU7Q6UYE1 221 aa19.15■□□□□ 0.66
CLN3-250ENST00000636839 PCYOX1LQ8NBM8 494 aa19.15■□□□□ 0.66
CLN3-250ENST00000636839 GLB1L3Q8NCI6 653 aaPredicted RBP19.15■□□□□ 0.66
CLN3-250ENST00000636839 FAM156AQ8NDB6 213 aa19.15■□□□□ 0.66
CLN3-250ENST00000636839 OR8K5Q8NH50 307 aa19.15■□□□□ 0.66
CLN3-250ENST00000636839 CEP76Q8TAP6 659 aa19.15■□□□□ 0.66
CLN3-250ENST00000636839 DNAJB14Q8TBM8 379 aa19.15■□□□□ 0.66
CLN3-250ENST00000636839 GTF2H4Q92759 462 aa19.15■□□□□ 0.66
CLN3-250ENST00000636839 TESCQ96BS2 214 aa19.15■□□□□ 0.66
CLN3-250ENST00000636839 CCDC124Q96CT7 223 aaKnown RBP19.15■□□□□ 0.66
CLN3-250ENST00000636839 TM4SF19Q96DZ7 209 aa19.15■□□□□ 0.66
CLN3-250ENST00000636839 ZFYVE21Q9BQ24 234 aa19.15■□□□□ 0.66
CLN3-250ENST00000636839 INPP5KQ9BT40 448 aa19.15■□□□□ 0.66
CLN3-250ENST00000636839 SLC6A16Q9GZN6 736 aa19.15■□□□□ 0.66
CLN3-250ENST00000636839 PRDM7Q9NQW5 492 aa19.15■□□□□ 0.66
CLN3-250ENST00000636839 AHSPQ9NZD4 102 aa19.15■□□□□ 0.66
CLN3-250ENST00000636839 CROTQ9UKG9 612 aa19.15■□□□□ 0.66
CLN3-250ENST00000636839 KMT2EQ8IZD2 1858 aa19.14■□□□□ 0.65
CLN3-250ENST00000636839 IGHV5-51A0A0C4DH38 117 aa19.14■□□□□ 0.65
CLN3-250ENST00000636839 WASHC1A8K0Z3 465 aa19.14■□□□□ 0.65
CLN3-250ENST00000636839 IL6P05231 212 aa19.14■□□□□ 0.65
CLN3-250ENST00000636839 IL3P08700 152 aa19.14■□□□□ 0.65
CLN3-250ENST00000636839 MPLP40238 635 aa19.14■□□□□ 0.65
CLN3-250ENST00000636839 WNT3P56703 355 aa19.14■□□□□ 0.65
CLN3-250ENST00000636839 C2orf80Q0P641 193 aa19.14■□□□□ 0.65
CLN3-250ENST00000636839 CEACAM7Q14002 265 aa19.14■□□□□ 0.65
CLN3-250ENST00000636839 ZNF385BQ569K4 471 aa19.14■□□□□ 0.65
CLN3-250ENST00000636839 PGM2L1Q6PCE3 622 aa19.14■□□□□ 0.65
CLN3-250ENST00000636839 DNAJC14Q6Y2X3 702 aaPredicted RBP19.14■□□□□ 0.65
CLN3-250ENST00000636839 OR4C6Q8NH72 309 aa19.14■□□□□ 0.65
CLN3-250ENST00000636839 CCDC74AQ96AQ1 378 aa19.14■□□□□ 0.65
CLN3-250ENST00000636839 GPATCH1Q9BRR8 931 aaKnown RBP19.14■□□□□ 0.65
CLN3-250ENST00000636839 DENND2DQ9H6A0 471 aaPredicted RBP19.14■□□□□ 0.65
CLN3-250ENST00000636839 ADA2Q9NZK5 511 aa19.14■□□□□ 0.65
CLN3-250ENST00000636839 MRPS2Q9Y399 296 aaKnown RBP19.14■□□□□ 0.65
CLN3-250ENST00000636839 CPED1A4D0V7 1026 aa19.13■□□□□ 0.65
CLN3-250ENST00000636839 SCAMP2O15127 329 aaKnown RBP19.13■□□□□ 0.65
CLN3-250ENST00000636839 DNAJB6O75190 326 aa19.13■□□□□ 0.65
CLN3-250ENST00000636839 C1QCP02747 245 aa19.13■□□□□ 0.65
CLN3-250ENST00000636839 SSR2P43308 183 aa19.13■□□□□ 0.65
CLN3-250ENST00000636839 MAPK12P53778 367 aa19.13■□□□□ 0.65
CLN3-250ENST00000636839 CLNS1AP54105 237 aaKnown RBP19.13■□□□□ 0.65
CLN3-250ENST00000636839 GTDC1Q4AE62 458 aa19.13■□□□□ 0.65
CLN3-250ENST00000636839 FAM71E1Q6IPT2 247 aa19.13■□□□□ 0.65
CLN3-250ENST00000636839 ZCCHC8Q6NZY4 707 aaKnown RBP19.13■□□□□ 0.65
CLN3-250ENST00000636839 GUSBP11Q6P575 273 aa19.13■□□□□ 0.65
CLN3-250ENST00000636839 KIAA2013Q8IYS2 634 aa19.13■□□□□ 0.65
CLN3-250ENST00000636839 TMEM132CQ8N3T6 1108 aa19.13■□□□□ 0.65
CLN3-250ENST00000636839 C19orf47Q8N9M1 422 aaKnown RBP19.13■□□□□ 0.65
CLN3-250ENST00000636839 ZCCHC10Q8TBK6 192 aa19.13■□□□□ 0.65
CLN3-250ENST00000636839 TM4SF18Q96CE8 201 aa19.13■□□□□ 0.65
CLN3-250ENST00000636839 SERHLQ9NQF3 203 aa19.13■□□□□ 0.65
CLN3-250ENST00000636839 NEUROG3Q9Y4Z2 214 aa19.13■□□□□ 0.65
CLN3-250ENST00000636839 SCN3AQ9NY46 2000 aa19.13■□□□□ 0.65
CLN3-250ENST00000636839 GALR2O43603 387 aaPredicted RBP19.13■□□□□ 0.65
CLN3-250ENST00000636839 GSNP06396 782 aa19.13■□□□□ 0.65
CLN3-250ENST00000636839 ZNF888P0CJ79 500 aaPredicted RBP19.13■□□□□ 0.65
CLN3-250ENST00000636839 TCN1P20061 433 aaPredicted RBP19.13■□□□□ 0.65
CLN3-250ENST00000636839 CSF2RBP32927 897 aa19.13■□□□□ 0.65
CLN3-250ENST00000636839 CDKN2CP42773 168 aa19.13■□□□□ 0.65
CLN3-250ENST00000636839 SLC7A2P52569 658 aa19.13■□□□□ 0.65
CLN3-250ENST00000636839 VSX2P58304 361 aaPredicted RBP19.13■□□□□ 0.65
CLN3-250ENST00000636839 MAPKAPK3Q16644 382 aa19.13■□□□□ 0.65
CLN3-250ENST00000636839 MUM1Q2TAK8 710 aa19.13■□□□□ 0.65
CLN3-250ENST00000636839 TMEM35AQ53FP2 167 aa19.13■□□□□ 0.65
CLN3-250ENST00000636839 RABL3Q5HYI8 236 aa19.13■□□□□ 0.65
CLN3-250ENST00000636839 COQ5Q5HYK3 327 aa19.13■□□□□ 0.65
CLN3-250ENST00000636839 C6orf10Q5SRN2 563 aa19.13■□□□□ 0.65
CLN3-250ENST00000636839 BNC2Q6ZN30 1099 aaPredicted RBP19.13■□□□□ 0.65
CLN3-250ENST00000636839 RNF44Q7L0R7 432 aa19.13■□□□□ 0.65
CLN3-250ENST00000636839 OR2L5Q8NG80 312 aa19.13■□□□□ 0.65
CLN3-250ENST00000636839 MIEF2Q96C03 454 aa19.13■□□□□ 0.65
CLN3-250ENST00000636839 ROPN1LQ96C74 230 aa19.13■□□□□ 0.65
CLN3-250ENST00000636839 AHCYL2Q96HN2 611 aaKnown RBP19.13■□□□□ 0.65
CLN3-250ENST00000636839 DDX31Q9H8H2 851 aaKnown RBP19.13■□□□□ 0.65
CLN3-250ENST00000636839 TEX10Q9NXF1 929 aaPredicted RBP19.13■□□□□ 0.65
CLN3-250ENST00000636839 SH3BP4Q9P0V3 963 aa19.13■□□□□ 0.65
CLN3-250ENST00000636839 C5AR2Q9P296 337 aa19.13■□□□□ 0.65
CLN3-250ENST00000636839 A0A0A6YYD5 115 aa19.12■□□□□ 0.65
CLN3-250ENST00000636839 SCN2BO60939 215 aa19.12■□□□□ 0.65
CLN3-250ENST00000636839 PRKRAO75569 313 aaKnown RBP19.12■□□□□ 0.65
CLN3-250ENST00000636839 ENGP17813 658 aa19.12■□□□□ 0.65
CLN3-250ENST00000636839 SLC6A2P23975 617 aa19.12■□□□□ 0.65
CLN3-250ENST00000636839 CERS1P27544 350 aa19.12■□□□□ 0.65
CLN3-250ENST00000636839 CD1CP29017 333 aa19.12■□□□□ 0.65
CLN3-250ENST00000636839 KIR3DL1P43629 444 aa19.12■□□□□ 0.65
CLN3-250ENST00000636839 ASMTP46597 345 aa19.12■□□□□ 0.65
CLN3-250ENST00000636839 PERM1Q5SV97 790 aa19.12■□□□□ 0.65
CLN3-250ENST00000636839 FBXW10Q5XX13 1052 aa19.12■□□□□ 0.65
CLN3-250ENST00000636839 ZC3H14Q6PJT7 736 aaKnown RBP19.12■□□□□ 0.65
CLN3-250ENST00000636839 HACD2Q6Y1H2 254 aa19.12■□□□□ 0.65
CLN3-250ENST00000636839 NUDT13Q86X67 352 aa19.12■□□□□ 0.65
CLN3-250ENST00000636839 CLECL1Q8IZS7 167 aa19.12■□□□□ 0.65
CLN3-250ENST00000636839 FBXW8Q8N3Y1 598 aa19.12■□□□□ 0.65
CLN3-250ENST00000636839 DPP10Q8N608 796 aa19.12■□□□□ 0.65
CLN3-250ENST00000636839 CENPKQ9BS16 269 aa19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms