RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 ZFR2Q9UPR6 939 aaKnown RBP10.18□□□□□ -0.78
CUX1-221ENST00000622516 VPS13AQ96RL7 3174 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 CKAP5Q14008 2032 aa10.18□□□□□ -0.78
CUX1-221ENST00000622516 LOC100130705A0A1B0GUX0 176 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 SLC31A1O15431 190 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 PI15O43692 258 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 XPNPEP2O43895 674 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 MAN1A2O60476 641 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 GCM2O75603 506 aaPredicted RBP10.17□□□□□ -0.78
CUX1-221ENST00000622516 FABP3P05413 133 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 FURINP09958 794 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 FUT4P22083 530 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 NR4A1P22736 598 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 ESRRGP62508 458 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 CD47Q08722 323 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 TMEM31Q5JXX7 168 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 OR2T5Q6IEZ7 315 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 TMEM26Q6ZUK4 368 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 RNF130Q86XS8 419 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 SLC44A2Q8IWA5 706 aaPredicted RBP10.17□□□□□ -0.78
CUX1-221ENST00000622516 ZC3H7AQ8IWR0 971 aaKnown RBP10.17□□□□□ -0.78
CUX1-221ENST00000622516 BPIFB6Q8NFQ5 453 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 OR2T29Q8NH02 315 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 PUM2Q8TB72 1066 aaKnown RBP eCLIP10.17□□□□□ -0.786e-6■■■■■ 38.3
CUX1-221ENST00000622516 SPPL2AQ8TCT8 520 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 C8orf4Q9NR00 106 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 BAG5Q9UL15 447 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 SAMHD1Q9Y3Z3 626 aaKnown RBP10.17□□□□□ -0.78
CUX1-221ENST00000622516 SDK1Q7Z5N4 2213 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 HOXB3P14651 431 aaPredicted RBP10.17□□□□□ -0.78
CUX1-221ENST00000622516 DAPP51397 102 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 SFSWAPQ12872 951 aaKnown RBP10.17□□□□□ -0.78
CUX1-221ENST00000622516 RAPSNQ13702 412 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 SLC5A12Q1EHB4 618 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 FAM46CQ5VWP2 391 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 METRNLQ641Q3 311 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 HORMAD1Q86X24 394 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 SYNPOQ8N3V7 929 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 AMER3Q8N944 861 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 LINC01555Q8NAE3 123 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 SMYD1Q8NB12 490 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 FBXO15Q8NCQ5 510 aaPredicted RBP10.17□□□□□ -0.78
CUX1-221ENST00000622516 OR52E4Q8NGH9 312 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 C12orf66Q96MD2 445 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 FERD3LQ96RJ6 166 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 MCOLN1Q9GZU1 580 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 MAGIXQ9H6Y5 334 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 WDR26Q9H7D7 661 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 FANCEQ9HB96 536 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 CD93Q9NPY3 652 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 MIEF1Q9NQG6 463 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 SIRT5Q9NXA8 310 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 FBXL12Q9NXK8 326 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 SPATA7Q9P0W8 599 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 KLHL20Q9Y2M5 609 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 AP3M1Q9Y2T2 418 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 SNX11Q9Y5W9 270 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 SCN3AQ9NY46 2000 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 PLPP1O14494 284 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 KELP23276 732 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 IGFBP5P24593 272 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 MVDP53602 400 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 PLA2G16P53816 162 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 IL5RAQ01344 420 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 LAIR2Q6ISS4 152 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 GALNT18Q6P9A2 607 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 Q6ZPB1 254 aaPredicted RBP10.17□□□□□ -0.78
CUX1-221ENST00000622516 MSANTD1Q6ZTZ1 278 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 C17orf64Q86WR6 236 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 FAM129CQ86XR2 697 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 DCUN1D3Q8IWE4 304 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 KLHDC8AQ8IYD2 350 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 SVOPLQ8N434 492 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 OR5K2Q8NHB8 316 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 C12orf43Q96C57 262 aaKnown RBP10.17□□□□□ -0.78
CUX1-221ENST00000622516 ISOC1Q96CN7 298 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 RHNO1Q9BSD3 238 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 CCDC90BQ9GZT6 254 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 RUBCNLQ9H714 662 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 TMEM184CQ9NVA4 438 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 CA5BQ9Y2D0 317 aa10.17□□□□□ -0.78
CUX1-221ENST00000622516 MUC22E2RYF6 1773 aaPredicted RBP10.17□□□□□ -0.78
CUX1-221ENST00000622516 MUC3AQ02505 3323 aa10.16□□□□□ -0.78
CUX1-221ENST00000622516 ANKDD1BA6NHY2 528 aa10.16□□□□□ -0.78
CUX1-221ENST00000622516 FOXE1O00358 373 aaPredicted RBP10.16□□□□□ -0.78
CUX1-221ENST00000622516 LCMT2O60294 686 aaKnown RBP10.16□□□□□ -0.78
CUX1-221ENST00000622516 APODP05090 189 aa10.16□□□□□ -0.78
CUX1-221ENST00000622516 SLC35G4P0C7Q5 338 aa10.16□□□□□ -0.78
CUX1-221ENST00000622516 CHI3L1P36222 383 aaPredicted RBP10.16□□□□□ -0.78
CUX1-221ENST00000622516 MAGEA2P43356 314 aa10.16□□□□□ -0.78
CUX1-221ENST00000622516 MAPK9P45984 424 aa10.16□□□□□ -0.78
CUX1-221ENST00000622516 PRIM2P49643 509 aa10.16□□□□□ -0.78
CUX1-221ENST00000622516 CDK9P50750 372 aaKnown RBP10.16□□□□□ -0.78
CUX1-221ENST00000622516 E2F2Q14209 437 aa10.16□□□□□ -0.78
CUX1-221ENST00000622516 MLF2Q15773 248 aaPredicted RBP10.16□□□□□ -0.78
CUX1-221ENST00000622516 ADAMTSL4Q6UY14 1074 aa10.16□□□□□ -0.78
CUX1-221ENST00000622516 CBLL1Q75N03 491 aa10.16□□□□□ -0.78
CUX1-221ENST00000622516 GPR155Q7Z3F1 870 aa10.16□□□□□ -0.78
CUX1-221ENST00000622516 ADGRF3Q8IZF5 1079 aa10.16□□□□□ -0.78
CUX1-221ENST00000622516 ATG16L2Q8NAA4 619 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms