RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 LRP8Q14114 963 aa9.74□□□□□ -0.85
SS18-210ENST00000578700 ARHGAP19Q14CB8 494 aa9.74□□□□□ -0.85
SS18-210ENST00000578700 CPSF6Q16630 551 aaKnown RBP eCLIP9.74□□□□□ -0.85
SS18-210ENST00000578700 ZNF658BQ4V348 819 aaPredicted RBP9.74□□□□□ -0.85
SS18-210ENST00000578700 SGO1Q5FBB7 561 aa9.74□□□□□ -0.85
SS18-210ENST00000578700 EEF1AKMT2Q5JPI9 291 aaKnown RBP9.74□□□□□ -0.85
SS18-210ENST00000578700 CYB5D1Q6P9G0 228 aa9.74□□□□□ -0.85
SS18-210ENST00000578700 ASB18Q6ZVZ8 466 aa9.74□□□□□ -0.85
SS18-210ENST00000578700 TBC1D21Q8IYX1 336 aa9.74□□□□□ -0.85
SS18-210ENST00000578700 LILRA3Q8N6C8 439 aaPredicted RBP9.74□□□□□ -0.85
SS18-210ENST00000578700 EFCAB3Q8N7B9 438 aa9.74□□□□□ -0.85
SS18-210ENST00000578700 BMPERQ8N8U9 685 aa9.74□□□□□ -0.85
SS18-210ENST00000578700 L3MBTL4Q8NA19 623 aa9.74□□□□□ -0.85
SS18-210ENST00000578700 PCYOX1LQ8NBM8 494 aa9.74□□□□□ -0.85
SS18-210ENST00000578700 RBM15BQ8NDT2 890 aaKnown RBP9.74□□□□□ -0.85
SS18-210ENST00000578700 OR56A3Q8NH54 315 aa9.74□□□□□ -0.85
SS18-210ENST00000578700 SELENOMQ8WWX9 145 aa9.74□□□□□ -0.85
SS18-210ENST00000578700 UBE2E3Q969T4 207 aa9.74□□□□□ -0.85
SS18-210ENST00000578700 SH3KBP1Q96B97 665 aa9.74□□□□□ -0.85
SS18-210ENST00000578700 C3orf30Q96M34 536 aa9.74□□□□□ -0.85
SS18-210ENST00000578700 PHF12Q96QT6 1004 aa9.74□□□□□ -0.85
SS18-210ENST00000578700 OR2M4Q96R27 311 aa9.74□□□□□ -0.85
SS18-210ENST00000578700 HAUS8Q9BT25 410 aa9.74□□□□□ -0.85
SS18-210ENST00000578700 EFCAB11Q9BUY7 163 aa9.74□□□□□ -0.85
SS18-210ENST00000578700 RAB11FIP5Q9BXF6 653 aa9.74□□□□□ -0.85
SS18-210ENST00000578700 CADM1Q9BY67 442 aaKnown RBP9.74□□□□□ -0.85
SS18-210ENST00000578700 PCBD2Q9H0N5 130 aa9.74□□□□□ -0.85
SS18-210ENST00000578700 TUBB1Q9H4B7 451 aa9.74□□□□□ -0.85
SS18-210ENST00000578700 NMRK1Q9NWW6 199 aa9.74□□□□□ -0.85
SS18-210ENST00000578700 NOP53Q9NZM5 478 aaKnown RBP9.74□□□□□ -0.85
SS18-210ENST00000578700 CCDC167Q9P0B6 97 aa9.74□□□□□ -0.85
SS18-210ENST00000578700 SPATA7Q9P0W8 599 aa9.74□□□□□ -0.85
SS18-210ENST00000578700 BCAP29Q9UHQ4 241 aa9.74□□□□□ -0.85
SS18-210ENST00000578700 PSMD13Q9UNM6 376 aa9.74□□□□□ -0.85
SS18-210ENST00000578700 RNF11Q9Y3C5 154 aa9.74□□□□□ -0.85
SS18-210ENST00000578700 HEBP2Q9Y5Z4 205 aa9.74□□□□□ -0.85
SS18-210ENST00000578700 A0A1B0GTL3 188 aa9.73□□□□□ -0.85
SS18-210ENST00000578700 DYTNA2CJ06 578 aa9.73□□□□□ -0.85
SS18-210ENST00000578700 POLR1CO15160 346 aaPredicted RBP9.73□□□□□ -0.85
SS18-210ENST00000578700 SEC22BO75396 215 aa9.73□□□□□ -0.85
SS18-210ENST00000578700 MYO1DO94832 1006 aa9.73□□□□□ -0.85
SS18-210ENST00000578700 SLC2A4P14672 509 aa9.73□□□□□ -0.85
SS18-210ENST00000578700 F8A1P23610 371 aa9.73□□□□□ -0.85
SS18-210ENST00000578700 ACADLP28330 430 aa9.73□□□□□ -0.85
SS18-210ENST00000578700 IMPA1P29218 277 aa9.73□□□□□ -0.85
SS18-210ENST00000578700 DLSTP36957 453 aa9.73□□□□□ -0.85
SS18-210ENST00000578700 CLCNKAP51800 687 aa9.73□□□□□ -0.85
SS18-210ENST00000578700 TBPL1P62380 186 aa9.73□□□□□ -0.85
SS18-210ENST00000578700 HHEXQ03014 270 aa9.73□□□□□ -0.85
SS18-210ENST00000578700 SQSTM1Q13501 440 aa9.73□□□□□ -0.85
SS18-210ENST00000578700 LAPTM5Q13571 262 aa9.73□□□□□ -0.85
SS18-210ENST00000578700 ABRAXAS2Q15018 415 aa9.73□□□□□ -0.85
SS18-210ENST00000578700 AP5B1Q2VPB7 878 aa9.73□□□□□ -0.85
SS18-210ENST00000578700 PDCD4Q53EL6 469 aaKnown RBP9.73□□□□□ -0.85
SS18-210ENST00000578700 PYCR3Q53H96 274 aa9.73□□□□□ -0.85
SS18-210ENST00000578700 C6orf136Q5SQH8 315 aa9.73□□□□□ -0.85
SS18-210ENST00000578700 WASHC2DQ5SRD0 308 aa9.73□□□□□ -0.85
SS18-210ENST00000578700 FRG2Q64ET8 278 aa9.73□□□□□ -0.85
SS18-210ENST00000578700 GRHL2Q6ISB3 625 aa9.73□□□□□ -0.85
SS18-210ENST00000578700 SCIMPQ6UWF3 145 aa9.73□□□□□ -0.85
SS18-210ENST00000578700 FAM83HQ6ZRV2 1179 aaPredicted RBP9.73□□□□□ -0.85
SS18-210ENST00000578700 TRIM46Q7Z4K8 759 aa9.73□□□□□ -0.85
SS18-210ENST00000578700 SCUBE1Q8IWY4 988 aa9.73□□□□□ -0.85
SS18-210ENST00000578700 OR5K2Q8NHB8 316 aa9.73□□□□□ -0.85
SS18-210ENST00000578700 SLC37A2Q8TED4 501 aa9.73□□□□□ -0.85
SS18-210ENST00000578700 TSPEARQ8WU66 669 aa9.73□□□□□ -0.85
SS18-210ENST00000578700 ZNF480Q8WV37 535 aa9.73□□□□□ -0.85
SS18-210ENST00000578700 STMN2Q93045 179 aa9.73□□□□□ -0.85
SS18-210ENST00000578700 FRG2BQ96QU4 278 aa9.73□□□□□ -0.85
SS18-210ENST00000578700 FERD3LQ96RJ6 166 aa9.73□□□□□ -0.85
SS18-210ENST00000578700 ZPBPQ9BS86 351 aa9.73□□□□□ -0.85
SS18-210ENST00000578700 THTPAQ9BU02 230 aa9.73□□□□□ -0.85
SS18-210ENST00000578700 SPRY4Q9C004 299 aa9.73□□□□□ -0.85
SS18-210ENST00000578700 MVB12BQ9H7P6 319 aa9.73□□□□□ -0.85
SS18-210ENST00000578700 LRTM1Q9HBL6 345 aa9.73□□□□□ -0.85
SS18-210ENST00000578700 PRDM8Q9NQV8 689 aa9.73□□□□□ -0.85
SS18-210ENST00000578700 SLC23A2Q9UGH3 650 aa9.73□□□□□ -0.85
SS18-210ENST00000578700 ZNF225Q9UK10 706 aa9.73□□□□□ -0.85
SS18-210ENST00000578700 PRPF19Q9UMS4 504 aaKnown RBP9.73□□□□□ -0.85
SS18-210ENST00000578700 PCDHGA11Q9Y5H2 935 aa9.73□□□□□ -0.85
SS18-210ENST00000578700 PTGDR2Q9Y5Y4 395 aa9.73□□□□□ -0.85
SS18-210ENST00000578700 KCNMB2Q9Y691 235 aa9.73□□□□□ -0.85
SS18-210ENST00000578700 COLEC10Q9Y6Z7 277 aa9.73□□□□□ -0.85
SS18-210ENST00000578700 CDC14CA4D256 554 aa9.72□□□□□ -0.85
SS18-210ENST00000578700 ENO4A6NNW6 628 aa9.72□□□□□ -0.85
SS18-210ENST00000578700 NR5A2O00482 541 aa9.72□□□□□ -0.85
SS18-210ENST00000578700 SLC22A3O75751 556 aa9.72□□□□□ -0.85
SS18-210ENST00000578700 RSL1D1O76021 490 aaKnown RBP9.72□□□□□ -0.85
SS18-210ENST00000578700 STAMBPO95630 424 aa9.72□□□□□ -0.85
SS18-210ENST00000578700 EML2O95834 649 aa9.72□□□□□ -0.85
SS18-210ENST00000578700 FURINP09958 794 aa9.72□□□□□ -0.85
SS18-210ENST00000578700 PRR35P0CG20 571 aa9.72□□□□□ -0.85
SS18-210ENST00000578700 HSD3B1P14060 373 aa9.72□□□□□ -0.85
SS18-210ENST00000578700 CXCR2P25025 360 aa9.72□□□□□ -0.85
SS18-210ENST00000578700 HSD3B2P26439 372 aa9.72□□□□□ -0.85
SS18-210ENST00000578700 NDUFS1P28331 727 aa9.72□□□□□ -0.85
SS18-210ENST00000578700 CD97P48960 835 aa9.72□□□□□ -0.85
SS18-210ENST00000578700 MRPL19P49406 292 aaKnown RBP9.72□□□□□ -0.85
SS18-210ENST00000578700 SLC25A3Q00325 362 aa9.72□□□□□ -0.85
SS18-210ENST00000578700 CSTF3Q12996 717 aaKnown RBP9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms