RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 RPS17P08708 135 aaKnown RBP8.86□□□□□ -0.99
LDLR-211ENST00000560173 SMIM10L1P0DMW3 83 aa8.86□□□□□ -0.99
LDLR-211ENST00000560173 KRT15P19012 456 aa8.86□□□□□ -0.99
LDLR-211ENST00000560173 MMP11P24347 488 aa8.86□□□□□ -0.99
LDLR-211ENST00000560173 HNRNPH1P31943 449 aaKnown RBP8.86□□□□□ -0.99
LDLR-211ENST00000560173 KLC1Q07866 573 aa8.86□□□□□ -0.99
LDLR-211ENST00000560173 CHAF1BQ13112 559 aa8.86□□□□□ -0.99
LDLR-211ENST00000560173 KCNAB2Q13303 367 aa8.86□□□□□ -0.99
LDLR-211ENST00000560173 GTF2H2Q13888 395 aa8.86□□□□□ -0.99
LDLR-211ENST00000560173 LY6DQ14210 128 aa8.86□□□□□ -0.99
LDLR-211ENST00000560173 ADPRMQ3LIE5 342 aa8.86□□□□□ -0.99
LDLR-211ENST00000560173 DEFB134Q4QY38 66 aa8.86□□□□□ -0.99
LDLR-211ENST00000560173 VWA2Q5GFL6 755 aa8.86□□□□□ -0.99
LDLR-211ENST00000560173 TOR1AIP1Q5JTV8 583 aa8.86□□□□□ -0.99
LDLR-211ENST00000560173 GRHL2Q6ISB3 625 aa8.86□□□□□ -0.99
LDLR-211ENST00000560173 GTF2H2CQ6P1K8 395 aa8.86□□□□□ -0.99
LDLR-211ENST00000560173 ABHD13Q7L211 337 aa8.86□□□□□ -0.99
LDLR-211ENST00000560173 LAS2Q8IYD9 372 aa8.86□□□□□ -0.99
LDLR-211ENST00000560173 PRSS58Q8IYP2 241 aa8.86□□□□□ -0.99
LDLR-211ENST00000560173 SHISA5Q8N114 240 aa8.86□□□□□ -0.99
LDLR-211ENST00000560173 UBE2E3Q969T4 207 aa8.86□□□□□ -0.99
LDLR-211ENST00000560173 NACC2Q96BF6 587 aa8.86□□□□□ -0.99
LDLR-211ENST00000560173 SMIM10Q96HG1 83 aa8.86□□□□□ -0.99
LDLR-211ENST00000560173 YIPF2Q9BWQ6 316 aa8.86□□□□□ -0.99
LDLR-211ENST00000560173 TRIM55Q9BYV6 548 aa8.86□□□□□ -0.99
LDLR-211ENST00000560173 SEMA4CQ9C0C4 833 aa8.86□□□□□ -0.99
LDLR-211ENST00000560173 ADNPQ9H2P0 1102 aa8.86□□□□□ -0.99
LDLR-211ENST00000560173 SEMA3GQ9NS98 782 aa8.86□□□□□ -0.99
LDLR-211ENST00000560173 P4HTMQ9NXG6 502 aa8.86□□□□□ -0.99
LDLR-211ENST00000560173 LGALS13Q9UHV8 139 aa8.86□□□□□ -0.99
LDLR-211ENST00000560173 TUBD1Q9UJT1 453 aa8.86□□□□□ -0.99
LDLR-211ENST00000560173 C3orf18Q9UK00 162 aa8.86□□□□□ -0.99
LDLR-211ENST00000560173 EMCNQ9ULC0 261 aa8.86□□□□□ -0.99
LDLR-211ENST00000560173 ANGPTL3Q9Y5C1 460 aa8.86□□□□□ -0.99
LDLR-211ENST00000560173 ACTL7BQ9Y614 415 aa8.86□□□□□ -0.99
LDLR-211ENST00000560173 HS3ST3B1Q9Y662 390 aa8.86□□□□□ -0.99
LDLR-211ENST00000560173 LRIT2A6NDA9 550 aa8.85□□□□□ -0.99
LDLR-211ENST00000560173 URADA6NGE7 173 aa8.85□□□□□ -0.99
LDLR-211ENST00000560173 ANKDD1BA6NHY2 528 aa8.85□□□□□ -0.99
LDLR-211ENST00000560173 IDSB3KWA1 339 aa8.85□□□□□ -0.99
LDLR-211ENST00000560173 PEX12O00623 359 aa8.85□□□□□ -0.99
LDLR-211ENST00000560173 SOCS6O14544 535 aa8.85□□□□□ -0.99
LDLR-211ENST00000560173 OR7A17O14581 309 aa8.85□□□□□ -0.99
LDLR-211ENST00000560173 UGDHO60701 494 aa8.85□□□□□ -0.99
LDLR-211ENST00000560173 GLRA3O75311 464 aa8.85□□□□□ -0.99
LDLR-211ENST00000560173 JRKO75564 520 aa8.85□□□□□ -0.99
LDLR-211ENST00000560173 DNAJB5O75953 348 aa8.85□□□□□ -0.99
LDLR-211ENST00000560173 BMP10O95393 424 aa8.85□□□□□ -0.99
LDLR-211ENST00000560173 IGHEP01854 428 aa8.85□□□□□ -0.99
LDLR-211ENST00000560173 ATP5F1P24539 256 aaPredicted RBP8.85□□□□□ -0.99
LDLR-211ENST00000560173 SERPINB1P30740 379 aa8.85□□□□□ -0.99
LDLR-211ENST00000560173 HNF4AP41235 474 aa8.85□□□□□ -0.99
LDLR-211ENST00000560173 XCR1P46094 333 aa8.85□□□□□ -0.99
LDLR-211ENST00000560173 EFNA3P52797 238 aa8.85□□□□□ -0.99
LDLR-211ENST00000560173 RAB8AP61006 207 aa8.85□□□□□ -0.99
LDLR-211ENST00000560173 STXBP1P61764 594 aaKnown RBP8.85□□□□□ -0.99
LDLR-211ENST00000560173 SKP1P63208 163 aa8.85□□□□□ -0.99
LDLR-211ENST00000560173 KCNC4Q03721 635 aa8.85□□□□□ -0.99
LDLR-211ENST00000560173 RBBP7Q16576 425 aa8.85□□□□□ -0.99
LDLR-211ENST00000560173 HIST2H2ACQ16777 129 aaPredicted RBP8.85□□□□□ -0.99
LDLR-211ENST00000560173 TTMPQ5BVD1 217 aa8.85□□□□□ -0.99
LDLR-211ENST00000560173 HIST2H2AA3Q6FI13 130 aa8.85□□□□□ -0.99
LDLR-211ENST00000560173 NIPAL1Q6NVV3 410 aa8.85□□□□□ -0.99
LDLR-211ENST00000560173 MED27Q6P2C8 311 aa8.85□□□□□ -0.99
LDLR-211ENST00000560173 MED25Q71SY5 747 aa8.85□□□□□ -0.99
LDLR-211ENST00000560173 LAPTM4BQ86VI4 370 aa8.85□□□□□ -0.99
LDLR-211ENST00000560173 TMEM102Q8N9M5 508 aaPredicted RBP8.85□□□□□ -0.99
LDLR-211ENST00000560173 L3MBTL4Q8NA19 623 aa8.85□□□□□ -0.99
LDLR-211ENST00000560173 OR7G3Q8NG95 312 aa8.85□□□□□ -0.99
LDLR-211ENST00000560173 OR52B6Q8NGF0 335 aa8.85□□□□□ -0.99
LDLR-211ENST00000560173 OR5T3Q8NGG3 340 aa8.85□□□□□ -0.99
LDLR-211ENST00000560173 OR51Q1Q8NH59 317 aa8.85□□□□□ -0.99
LDLR-211ENST00000560173 ZNF483Q8TF39 744 aaPredicted RBP8.85□□□□□ -0.99
LDLR-211ENST00000560173 ZNF473Q8WTR7 871 aaKnown RBP8.85□□□□□ -0.99
LDLR-211ENST00000560173 CCT6BQ92526 530 aa8.85□□□□□ -0.99
LDLR-211ENST00000560173 GAL3ST3Q96A11 431 aa8.85□□□□□ -0.99
LDLR-211ENST00000560173 ARL8AQ96BM9 186 aa8.85□□□□□ -0.99
LDLR-211ENST00000560173 TLCD1Q96CP7 247 aa8.85□□□□□ -0.99
LDLR-211ENST00000560173 MS4A6EQ96DS6 147 aa8.85□□□□□ -0.99
LDLR-211ENST00000560173 NSUN5Q96P11 429 aaKnown RBP8.85□□□□□ -0.99
LDLR-211ENST00000560173 MESP1Q9BRJ9 268 aa8.85□□□□□ -0.99
LDLR-211ENST00000560173 C1QTNF3Q9BXJ4 246 aa8.85□□□□□ -0.99
LDLR-211ENST00000560173 ING2Q9H160 280 aa8.85□□□□□ -0.99
LDLR-211ENST00000560173 NOL11Q9H8H0 719 aaKnown RBP8.85□□□□□ -0.99
LDLR-211ENST00000560173 IPPKQ9H8X2 491 aa8.85□□□□□ -0.99
LDLR-211ENST00000560173 ACTR8Q9H981 624 aa8.85□□□□□ -0.99
LDLR-211ENST00000560173 CLK4Q9HAZ1 481 aaKnown RBP8.85□□□□□ -0.99
LDLR-211ENST00000560173 ZBTB26Q9HCK0 441 aa8.85□□□□□ -0.99
LDLR-211ENST00000560173 DCDC2Q9UHG0 476 aa8.85□□□□□ -0.99
LDLR-211ENST00000560173 FBXL4Q9UKA2 621 aa8.85□□□□□ -0.99
LDLR-211ENST00000560173 TSC22D4Q9Y3Q8 395 aa8.85□□□□□ -0.99
LDLR-211ENST00000560173 SCN3AQ9NY46 2000 aa8.85□□□□□ -0.99
LDLR-211ENST00000560173 A0A1W2PQ72 361 aa8.84□□□□□ -0.99
LDLR-211ENST00000560173 TLDC2A0PJX2 215 aa8.84□□□□□ -0.99
LDLR-211ENST00000560173 H0YIV9 168 aa8.84□□□□□ -0.99
LDLR-211ENST00000560173 ERI3O43414 337 aaKnown RBP8.84□□□□□ -0.99
LDLR-211ENST00000560173 CHST10O43529 356 aa8.84□□□□□ -0.99
LDLR-211ENST00000560173 DLX3O60479 287 aa8.84□□□□□ -0.99
LDLR-211ENST00000560173 DNAJB6O75190 326 aa8.84□□□□□ -0.99
LDLR-211ENST00000560173 CEACAM4O75871 244 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 409.2 ms