RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 FAM205BPQ63HN1 556 aa3.07□□□□□ -1.92
VPS13C-208ENST00000559119 NME8Q8N427 588 aa3.07□□□□□ -1.92
VPS13C-208ENST00000559119 OR1B1Q8NGR6 318 aa3.07□□□□□ -1.92
VPS13C-208ENST00000559119 PPP1R16AQ96I34 528 aa3.07□□□□□ -1.92
VPS13C-208ENST00000559119 ABHD1Q96SE0 405 aa3.07□□□□□ -1.92
VPS13C-208ENST00000559119 XAB2Q9HCS7 855 aaKnown RBP3.07□□□□□ -1.92
VPS13C-208ENST00000559119 ZNF275Q9NSD4 429 aaPredicted RBP3.07□□□□□ -1.92
VPS13C-208ENST00000559119 THYN1Q9P016 225 aa3.07□□□□□ -1.92
VPS13C-208ENST00000559119 ZNF346Q9UL40 294 aaKnown RBP3.07□□□□□ -1.92
VPS13C-208ENST00000559119 PCDHGB4Q9UN71 923 aa3.07□□□□□ -1.92
VPS13C-208ENST00000559119 hCG_1809904A0A1W2PP81 198 aa3.06□□□□□ -1.92
VPS13C-208ENST00000559119 A0A1W2PPE2 198 aa3.06□□□□□ -1.92
VPS13C-208ENST00000559119 A0A1W2PR64 198 aa3.06□□□□□ -1.92
VPS13C-208ENST00000559119 IGHG1P01857 330 aa3.06□□□□□ -1.92
VPS13C-208ENST00000559119 HOXC4P09017 264 aaPredicted RBP3.06□□□□□ -1.92
VPS13C-208ENST00000559119 STAG3L1P0CL83 205 aa3.06□□□□□ -1.92
VPS13C-208ENST00000559119 PORP16435 677 aaPredicted RBP3.06□□□□□ -1.92
VPS13C-208ENST00000559119 GPX3P22352 226 aa3.06□□□□□ -1.92
VPS13C-208ENST00000559119 DUTP33316 252 aaKnown RBP3.06□□□□□ -1.92
VPS13C-208ENST00000559119 NCAPD3P42695 1498 aa3.06□□□□□ -1.92
VPS13C-208ENST00000559119 IST1P53990 364 aa3.06□□□□□ -1.92
VPS13C-208ENST00000559119 CLNS1AP54105 237 aaKnown RBP3.06□□□□□ -1.92
VPS13C-208ENST00000559119 UBASH3AP57075 661 aa3.06□□□□□ -1.92
VPS13C-208ENST00000559119 RIPK4P57078 832 aa3.06□□□□□ -1.92
VPS13C-208ENST00000559119 CUL4AQ13619 759 aa3.06□□□□□ -1.92
VPS13C-208ENST00000559119 ECSCRQ19T08 205 aa3.06□□□□□ -1.92
VPS13C-208ENST00000559119 LETM2Q2VYF4 491 aa3.06□□□□□ -1.92
VPS13C-208ENST00000559119 LACTB2Q53H82 288 aaPredicted RBP3.06□□□□□ -1.92
VPS13C-208ENST00000559119 WSCD1Q658N2 575 aa3.06□□□□□ -1.92
VPS13C-208ENST00000559119 KRT39Q6A163 491 aa3.06□□□□□ -1.92
VPS13C-208ENST00000559119 Q6ZVQ6 151 aa3.06□□□□□ -1.92
VPS13C-208ENST00000559119 PIGWQ7Z7B1 504 aa3.06□□□□□ -1.92
VPS13C-208ENST00000559119 CARNMT1Q8N4J0 409 aa3.06□□□□□ -1.92
VPS13C-208ENST00000559119 RBM41Q96IZ5 413 aaKnown RBP3.06□□□□□ -1.92
VPS13C-208ENST00000559119 ANKRD27Q96NW4 1050 aa3.06□□□□□ -1.92
VPS13C-208ENST00000559119 TNFRSF13CQ96RJ3 184 aa3.06□□□□□ -1.92
VPS13C-208ENST00000559119 BARD1Q99728 777 aaKnown RBP3.06□□□□□ -1.92
VPS13C-208ENST00000559119 MAPKAP1Q9BPZ7 522 aa3.06□□□□□ -1.92
VPS13C-208ENST00000559119 KLHL4Q9C0H6 718 aa3.06□□□□□ -1.92
VPS13C-208ENST00000559119 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP3.06□□□□□ -1.92
VPS13C-208ENST00000559119 CLEC4EQ9ULY5 219 aa3.06□□□□□ -1.92
VPS13C-208ENST00000559119 CPQQ9Y646 472 aa3.06□□□□□ -1.92
VPS13C-208ENST00000559119 TRAV9-2A0A087WT02 112 aa3.05□□□□□ -1.92
VPS13C-208ENST00000559119 TCRBV21S2A2A0A5A6 115 aa3.05□□□□□ -1.92
VPS13C-208ENST00000559119 IGLON5A6NGN9 336 aa3.05□□□□□ -1.92
VPS13C-208ENST00000559119 A8MU76 341 aa3.05□□□□□ -1.92
VPS13C-208ENST00000559119 OR6B1O95007 311 aa3.05□□□□□ -1.92
VPS13C-208ENST00000559119 PIGRP01833 764 aa3.05□□□□□ -1.92
VPS13C-208ENST00000559119 LIMK1P53667 647 aa3.05□□□□□ -1.92
VPS13C-208ENST00000559119 CALD1Q05682 793 aaKnown RBP3.05□□□□□ -1.92
VPS13C-208ENST00000559119 VWA2Q5GFL6 755 aa3.05□□□□□ -1.92
VPS13C-208ENST00000559119 FUT10Q6P4F1 479 aa3.05□□□□□ -1.92
VPS13C-208ENST00000559119 DHRS11Q6UWP2 260 aa3.05□□□□□ -1.92
VPS13C-208ENST00000559119 Q71RC1 249 aaPredicted RBP3.05□□□□□ -1.92
VPS13C-208ENST00000559119 TLK2Q86UE8 772 aa3.05□□□□□ -1.92
VPS13C-208ENST00000559119 AMIGO1Q86WK6 493 aa3.05□□□□□ -1.92
VPS13C-208ENST00000559119 PRSS35Q8N3Z0 413 aa3.05□□□□□ -1.92
VPS13C-208ENST00000559119 TEX26Q8N6G2 289 aa3.05□□□□□ -1.92
VPS13C-208ENST00000559119 ANKRD13CQ8N6S4 541 aa3.05□□□□□ -1.92
VPS13C-208ENST00000559119 SECISBP2LQ93073 1101 aaKnown RBP3.05□□□□□ -1.92
VPS13C-208ENST00000559119 ALKBH3Q96Q83 286 aaPredicted RBP3.05□□□□□ -1.92
VPS13C-208ENST00000559119 DEFB126Q9BYW3 111 aa3.05□□□□□ -1.92
VPS13C-208ENST00000559119 ARMCX1Q9P291 453 aa3.05□□□□□ -1.92
VPS13C-208ENST00000559119 WI2-2373I1.2A0A1W2PRP0 233 aa3.04□□□□□ -1.92
VPS13C-208ENST00000559119 BCLAF3A2AJT9 711 aaKnown RBP3.04□□□□□ -1.92
VPS13C-208ENST00000559119 TNFSF11O14788 317 aa3.04□□□□□ -1.92
VPS13C-208ENST00000559119 KRTAP5-8O75690 187 aa3.04□□□□□ -1.92
VPS13C-208ENST00000559119 BEST1O76090 585 aa3.04□□□□□ -1.92
VPS13C-208ENST00000559119 HCKP08631 526 aa3.04□□□□□ -1.92
VPS13C-208ENST00000559119 RXRGP48443 463 aa3.04□□□□□ -1.92
VPS13C-208ENST00000559119 GEMIN4P57678 1058 aaKnown RBP3.04□□□□□ -1.92
VPS13C-208ENST00000559119 ARMCX5Q6P1M9 558 aa3.04□□□□□ -1.92
VPS13C-208ENST00000559119 ZNF530Q6P9A1 599 aaPredicted RBP3.04□□□□□ -1.92
VPS13C-208ENST00000559119 NAXDQ8IW45 347 aa3.04□□□□□ -1.92
VPS13C-208ENST00000559119 RANBP9Q96S59 729 aa3.04□□□□□ -1.92
VPS13C-208ENST00000559119 SNX25Q9H3E2 840 aa3.04□□□□□ -1.92
VPS13C-208ENST00000559119 TEX48A0A1B0GUV7 120 aa3.03□□□□□ -1.92
VPS13C-208ENST00000559119 H3BMM5 538 aa3.03□□□□□ -1.92
VPS13C-208ENST00000559119 KIF5CO60282 957 aa3.03□□□□□ -1.92
VPS13C-208ENST00000559119 HSP90AA1P07900 732 aaKnown RBP3.03□□□□□ -1.92
VPS13C-208ENST00000559119 GOT1P17174 413 aa3.03□□□□□ -1.92
VPS13C-208ENST00000559119 EPORP19235 508 aa3.03□□□□□ -1.92
VPS13C-208ENST00000559119 CTNNA2P26232 953 aa3.03□□□□□ -1.92
VPS13C-208ENST00000559119 BRCC3P46736 316 aa3.03□□□□□ -1.92
VPS13C-208ENST00000559119 CSE1LP55060 971 aaKnown RBP3.03□□□□□ -1.92
VPS13C-208ENST00000559119 UCNP55089 124 aa3.03□□□□□ -1.92
VPS13C-208ENST00000559119 ACSM1Q08AH1 577 aa3.03□□□□□ -1.92
VPS13C-208ENST00000559119 TRMT11Q7Z4G4 463 aaKnown RBP3.03□□□□□ -1.92
VPS13C-208ENST00000559119 C5orf24Q7Z6I8 188 aa3.03□□□□□ -1.92
VPS13C-208ENST00000559119 PRUNE1Q86TP1 453 aa3.03□□□□□ -1.92
VPS13C-208ENST00000559119 ZNF525Q8N782 197 aa3.03□□□□□ -1.92
VPS13C-208ENST00000559119 TEX19Q8NA77 164 aa3.03□□□□□ -1.92
VPS13C-208ENST00000559119 PCDHB18PQ96TA0 734 aa3.03□□□□□ -1.92
VPS13C-208ENST00000559119 NAP1L4Q99733 375 aaKnown RBP3.03□□□□□ -1.92
VPS13C-208ENST00000559119 CHORDC1Q9UHD1 332 aaPredicted RBP3.03□□□□□ -1.92
VPS13C-208ENST00000559119 ANAPC2Q9UJX6 822 aa3.03□□□□□ -1.92
VPS13C-208ENST00000559119 CEP164Q9UPV0 1460 aa3.03□□□□□ -1.93
VPS13C-208ENST00000559119 KAT6BQ8WYB5 2073 aa3.02□□□□□ -1.93
VPS13C-208ENST00000559119 TRBV5-4A0A0C4DH59 114 aa3.02□□□□□ -1.93
VPS13C-208ENST00000559119 SCO2O43819 266 aa3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms