RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 PIGVQ9NUD9 493 aa1.45□□□□□ -2.18
USP3-209ENST00000558925 TXLNGQ9NUQ3 528 aa1.45□□□□□ -2.18
USP3-209ENST00000558925 TBC1D13Q9NVG8 400 aa1.45□□□□□ -2.18
USP3-209ENST00000558925 HACD3Q9P035 362 aa1.45□□□□□ -2.18
USP3-209ENST00000558925 ZNF624Q9P2J8 865 aaPredicted RBP1.45□□□□□ -2.18
USP3-209ENST00000558925 C19orf25Q9UFG5 118 aaPredicted RBP1.45□□□□□ -2.18
USP3-209ENST00000558925 MAD2L2Q9UI95 211 aa1.45□□□□□ -2.18
USP3-209ENST00000558925 PILRAQ9UKJ1 303 aa1.45□□□□□ -2.18
USP3-209ENST00000558925 PLCL2Q9UPR0 1127 aa1.45□□□□□ -2.18
USP3-209ENST00000558925 PIN4Q9Y237 131 aaKnown RBP1.45□□□□□ -2.18
USP3-209ENST00000558925 SH3GLB1Q9Y371 365 aa1.45□□□□□ -2.18
USP3-209ENST00000558925 STRAPQ9Y3F4 350 aaKnown RBP1.45□□□□□ -2.18
USP3-209ENST00000558925 ETV7Q9Y603 341 aa1.45□□□□□ -2.18
USP3-209ENST00000558925 SPAG9O60271 1321 aaKnown RBP1.44□□□□□ -2.18
USP3-209ENST00000558925 NEDD4P46934 1319 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 A0A087WZ39 114 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 A0A1W2PR80 420 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 SH3PXD2BA1X283 911 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 MACROD2A1Z1Q3 448 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 DENND3A2RUS2 1198 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 TMEM89A2RUT3 159 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 RGSL1A5PLK6 1076 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 FAM149AA5PLN7 773 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 MSGN1A6NI15 193 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 SLC9B1P1A6NJY1 282 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 IFITM10A6NMD0 228 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 PMS2P5A8MQ11 134 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 SMIM1B2RUZ4 78 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 BMPR1BO00238 502 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 SLC28A1O00337 649 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 SIGLEC5O15389 551 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 TEX28O15482 410 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 PRPSAP2O60256 369 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 LRP3O75074 770 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 ATP6V1G1O75348 118 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 PRDM1O75626 825 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 CDK2AP2O75956 126 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 SEC24AO95486 1093 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 CLDN1O95832 211 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 GAS8O95995 478 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 PDGFBP01127 241 aaPredicted RBP1.44□□□□□ -2.18
USP3-209ENST00000558925 RAF1P04049 648 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 YES1P07947 543 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 PATE4P0C8F1 98 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 SLC2A2P11168 524 aaPredicted RBP1.44□□□□□ -2.18
USP3-209ENST00000558925 CEACAM1P13688 526 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 ETS1P14921 441 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 AREGP15514 252 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 PAX1P15863 534 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 SELEP16581 610 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 FERP16591 822 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 RPL35AP18077 110 aaKnown RBP1.44□□□□□ -2.18
USP3-209ENST00000558925 CCNA2P20248 432 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 ITGA3P26006 1051 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 PRDX6P30041 224 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 CHRNA3P32297 505 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 HPDP32754 393 aaPredicted RBP1.44□□□□□ -2.18
USP3-209ENST00000558925 HSPA1LP34931 641 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 TIMP3P35625 211 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 SOX3P41225 446 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 MAGEA11P43364 429 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 GLIPR1P48060 266 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 LEPRP48357 1165 aaKnown RBP1.44□□□□□ -2.18
USP3-209ENST00000558925 HNRNPFP52597 415 aaKnown RBP1.44□□□□□ -2.18
USP3-209ENST00000558925 ATXN3P54252 364 aaPredicted RBP1.44□□□□□ -2.18
USP3-209ENST00000558925 XGP55808 180 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 HUNKP57058 714 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 NLRP11P59045 1033 aaKnown RBP1.44□□□□□ -2.18
USP3-209ENST00000558925 DCDC1P59894 354 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 HERV-K104P63124 156 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 MYL7Q01449 175 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 SLC34A1Q06495 639 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 SLC3A1Q07837 685 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 GPR50Q13585 617 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 ITGA9Q13797 1035 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 GIT2Q14161 759 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 MTF1Q14872 753 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 ZRSR1Q15695 479 aaKnown RBP1.44□□□□□ -2.18
USP3-209ENST00000558925 CEBPEQ15744 281 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 STXBP2Q15833 593 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 DUSP5Q16690 384 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 WSCD2Q2TBF2 565 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 KIAA1644Q3SXP7 199 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 LDLRAP1Q5SW96 308 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 LYPLAL1Q5VWZ2 237 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 WBP2NLQ6ICG8 309 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 SLC27A4Q6P1M0 643 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 SLC25A47Q6Q0C1 308 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 MFSD7Q6UXD7 560 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 GSG1LQ6UXU4 331 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 CEACAM20Q6UY09 585 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 B3GLCTQ6Y288 498 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 TMEM64Q6YI46 380 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 MEX3BQ6ZN04 569 aaKnown RBP1.44□□□□□ -2.18
USP3-209ENST00000558925 G2E3Q7L622 706 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 CATSPER4Q7RTX7 472 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 TRMT1LQ7Z2T5 733 aaKnown RBP1.44□□□□□ -2.18
USP3-209ENST00000558925 PTAR1Q7Z6K3 402 aaPredicted RBP1.44□□□□□ -2.18
USP3-209ENST00000558925 ADGRD2Q7Z7M1 963 aa1.44□□□□□ -2.18
USP3-209ENST00000558925 APLFQ8IW19 511 aaPredicted RBP1.44□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms