RNA–Protein interactions for RNA: ENST00000558561.1

SPG11-211, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-211ENST00000558561 MT-ND5P03915 603 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 GP1BAP07359 652 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 F3P13726 295 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 ATP1B2P14415 290 aaPredicted RBP4.1□□□□□ -1.75
SPG11-211ENST00000558561 PVRP15151 417 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 MSH3P20585 1137 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 IDSP22304 550 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 CA4P22748 312 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 F8A1P23610 371 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 ADRA1DP25100 572 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 MSNP26038 577 aaKnown RBP4.1□□□□□ -1.75
SPG11-211ENST00000558561 GABRB3P28472 473 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 PPIFP30405 207 aaKnown RBP4.1□□□□□ -1.75
SPG11-211ENST00000558561 CCR7P32248 378 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 CETN2P41208 172 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 LMAN1P49257 510 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 LIMK2P53671 638 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 INHBCP55103 352 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 BASP1P80723 227 aaKnown RBP4.1□□□□□ -1.75
SPG11-211ENST00000558561 MRPS35P82673 323 aaKnown RBP4.1□□□□□ -1.75
SPG11-211ENST00000558561 TIAL1Q01085 375 aaKnown RBP eCLIP4.1□□□□□ -1.75
SPG11-211ENST00000558561 ABRQ12979 859 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 ILKQ13418 452 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 GPR18Q14330 331 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 GRB7Q14451 532 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 ZNF169Q14929 603 aaPredicted RBP4.1□□□□□ -1.75
SPG11-211ENST00000558561 NR1D2Q14995 579 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 CYP1B1Q16678 543 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 LONRF1Q17RB8 773 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 INSCQ1MX18 579 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 KIAA1614Q5VZ46 1190 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 PAPD7Q5XG87 772 aaKnown RBP4.1□□□□□ -1.75
SPG11-211ENST00000558561 CAPRIN2Q6IMN6 1127 aaKnown RBP4.1□□□□□ -1.75
SPG11-211ENST00000558561 LCN10Q6JVE6 187 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 TMEM71Q6P5X7 295 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 ZNF549Q6P9A3 640 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 CCDC137Q6PK04 289 aaKnown RBP4.1□□□□□ -1.75
SPG11-211ENST00000558561 RBM44Q6ZP01 1051 aaKnown RBP4.1□□□□□ -1.75
SPG11-211ENST00000558561 FAM92BQ6ZTR7 304 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 TMEM26Q6ZUK4 368 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 RAB11FIP2Q7L804 512 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 GSTA5Q7RTV2 222 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 MAVSQ7Z434 540 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 ARHGAP22Q7Z5H3 698 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 SNX20Q7Z614 316 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 VASH2Q86V25 355 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 PIM3Q86V86 326 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 AMZ2Q86W34 360 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 TRAPPC5Q8IUR0 188 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 DENND6AQ8IWF6 608 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 KLHL7Q8IXQ5 586 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 BMPERQ8N8U9 685 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 NAT8LQ8N9F0 302 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 DNAAF3Q8N9W5 541 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 DDHD1Q8NEL9 900 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 ACVR1CQ8NER5 493 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 TRIM58Q8NG06 486 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 OR4E2Q8NGC2 313 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 ACTRT2Q8TDY3 377 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 STYXQ8WUJ0 223 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 TMEM171Q8WVE6 324 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 FGF11Q92914 225 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 PBKQ96KB5 322 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 SNX22Q96L94 193 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 IL17FQ96PD4 163 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 TGM7Q96PF1 710 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 RUFY1Q96T51 708 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 MAP3K3Q99759 626 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 TRIM51Q9BSJ1 452 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 ANP32EQ9BTT0 268 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 ZSCAN5AQ9BUG6 496 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 SEMA4CQ9C0C4 833 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 TRABDQ9H4I3 376 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 SYNPO2LQ9H987 977 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 LRRC40Q9H9A6 602 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 POLR1BQ9H9Y6 1135 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 SLC40A1Q9NP59 571 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 TREX1Q9NSU2 369 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 TBC1D23Q9NUY8 699 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 SPHK1Q9NYA1 384 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 HACD3Q9P035 362 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 VPS18Q9P253 973 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 PAK5Q9P286 719 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 STOX2Q9P2F5 926 aaPredicted RBP4.1□□□□□ -1.75
SPG11-211ENST00000558561 NFKBIL1Q9UBC1 381 aaPredicted RBP4.1□□□□□ -1.75
SPG11-211ENST00000558561 CRLS1Q9UJA2 301 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 MID2Q9UJV3 735 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 SNX12Q9UMY4 172 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 SNX24Q9Y343 169 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 PKP3Q9Y446 797 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 JRKLQ9Y4A0 524 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 LOXL2Q9Y4K0 774 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 DMRT1Q9Y5R6 373 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 MRPS18BQ9Y676 258 aaKnown RBP4.1□□□□□ -1.75
SPG11-211ENST00000558561 NFS1Q9Y697 457 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 CHD6Q8TD26 2715 aa4.1□□□□□ -1.75
SPG11-211ENST00000558561 PCSK5Q92824 1860 aa4.09□□□□□ -1.75
SPG11-211ENST00000558561 TNRC6AQ8NDV7 1962 aaKnown RBP4.09□□□□□ -1.75
SPG11-211ENST00000558561 HEATR5BQ9P2D3 2071 aa4.09□□□□□ -1.75
SPG11-211ENST00000558561 CACNA1GO43497 2377 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms