RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 MAPK1P28482 360 aa11.21□□□□□ -0.62
SHMT2-212ENST00000554467 PTPN6P29350 595 aa11.21□□□□□ -0.62
SHMT2-212ENST00000554467 IGFALSP35858 605 aa11.21□□□□□ -0.62
SHMT2-212ENST00000554467 ADPRHP54922 357 aa11.21□□□□□ -0.62
SHMT2-212ENST00000554467 CSTF3Q12996 717 aaKnown RBP11.21□□□□□ -0.62
SHMT2-212ENST00000554467 AGAP7PQ5VUJ5 663 aa11.21□□□□□ -0.62
SHMT2-212ENST00000554467 RNF165Q6ZSG1 346 aa11.21□□□□□ -0.62
SHMT2-212ENST00000554467 ZNF548Q8NEK5 533 aaPredicted RBP11.21□□□□□ -0.62
SHMT2-212ENST00000554467 TRPV3Q8NET8 790 aa11.21□□□□□ -0.62
SHMT2-212ENST00000554467 SH3YL1Q96HL8 342 aaPredicted RBP11.21□□□□□ -0.62
SHMT2-212ENST00000554467 FERD3LQ96RJ6 166 aa11.21□□□□□ -0.62
SHMT2-212ENST00000554467 AGPAT4Q9NRZ5 378 aa11.21□□□□□ -0.62
SHMT2-212ENST00000554467 IFT52Q9Y366 437 aa11.21□□□□□ -0.62
SHMT2-212ENST00000554467 PCDHB3Q9Y5E6 796 aa11.21□□□□□ -0.62
SHMT2-212ENST00000554467 HEATR5BQ9P2D3 2071 aa11.21□□□□□ -0.62
SHMT2-212ENST00000554467 SNRNP200O75643 2136 aaKnown RBP11.21□□□□□ -0.62
SHMT2-212ENST00000554467 A0A0G2JN53 185 aa11.21□□□□□ -0.62
SHMT2-212ENST00000554467 GABRR3A8MPY1 467 aa11.21□□□□□ -0.62
SHMT2-212ENST00000554467 PDZK1P1A8MUH7 402 aa11.21□□□□□ -0.62
SHMT2-212ENST00000554467 H7BY64 318 aa11.21□□□□□ -0.62
SHMT2-212ENST00000554467 KPNA4O00629 521 aaPredicted RBP11.21□□□□□ -0.62
SHMT2-212ENST00000554467 B4GAT1O43505 415 aa11.21□□□□□ -0.62
SHMT2-212ENST00000554467 PCDH7O60245 1069 aa11.21□□□□□ -0.62
SHMT2-212ENST00000554467 UGDHO60701 494 aa11.21□□□□□ -0.62
SHMT2-212ENST00000554467 NPPAP01160 153 aa11.21□□□□□ -0.62
SHMT2-212ENST00000554467 NR4A2P43354 598 aa11.21□□□□□ -0.62
SHMT2-212ENST00000554467 CCT8P50990 548 aa11.21□□□□□ -0.62
SHMT2-212ENST00000554467 TPTEP56180 551 aa11.21□□□□□ -0.62
SHMT2-212ENST00000554467 SMU1Q2TAY7 513 aa11.21□□□□□ -0.62
SHMT2-212ENST00000554467 METRNLQ641Q3 311 aa11.21□□□□□ -0.62
SHMT2-212ENST00000554467 SDE2Q6IQ49 451 aa11.21□□□□□ -0.62
SHMT2-212ENST00000554467 NXPE4Q6UWF7 544 aa11.21□□□□□ -0.62
SHMT2-212ENST00000554467 CLIP4Q8N3C7 705 aa11.21□□□□□ -0.62
SHMT2-212ENST00000554467 OR8J3Q8NGG0 315 aa11.21□□□□□ -0.62
SHMT2-212ENST00000554467 FAM162AQ96A26 154 aa11.21□□□□□ -0.62
SHMT2-212ENST00000554467 RAD51AP1Q96B01 352 aa11.21□□□□□ -0.62
SHMT2-212ENST00000554467 FAM120BQ96EK7 910 aaKnown RBP11.21□□□□□ -0.62
SHMT2-212ENST00000554467 ITCHQ96J02 903 aa11.21□□□□□ -0.62
SHMT2-212ENST00000554467 PRAP1Q96NZ9 151 aa11.21□□□□□ -0.62
SHMT2-212ENST00000554467 INSM2Q96T92 566 aaPredicted RBP11.21□□□□□ -0.62
SHMT2-212ENST00000554467 MACROD1Q9BQ69 325 aa11.21□□□□□ -0.62
SHMT2-212ENST00000554467 TEX101Q9BY14 249 aa11.21□□□□□ -0.62
SHMT2-212ENST00000554467 ADNPQ9H2P0 1102 aa11.21□□□□□ -0.62
SHMT2-212ENST00000554467 PRDM8Q9NQV8 689 aa11.21□□□□□ -0.62
SHMT2-212ENST00000554467 ANKMY1Q9P2S6 941 aa11.21□□□□□ -0.62
SHMT2-212ENST00000554467 DENND4AQ7Z401 1863 aa11.2□□□□□ -0.62
SHMT2-212ENST00000554467 SNAP29O95721 258 aa11.2□□□□□ -0.62
SHMT2-212ENST00000554467 KLK1P06870 262 aa11.2□□□□□ -0.62
SHMT2-212ENST00000554467 GGT1P19440 569 aa11.2□□□□□ -0.62
SHMT2-212ENST00000554467 WNT3P56703 355 aa11.2□□□□□ -0.62
SHMT2-212ENST00000554467 IL1RL1Q01638 556 aa11.2□□□□□ -0.62
SHMT2-212ENST00000554467 GRSF1Q12849 480 aaKnown RBP eCLIP11.2□□□□□ -0.62
SHMT2-212ENST00000554467 COMMD6Q7Z4G1 85 aa11.2□□□□□ -0.62
SHMT2-212ENST00000554467 ADCK2Q7Z695 626 aa11.2□□□□□ -0.62
SHMT2-212ENST00000554467 TMCO5AQ8N6Q1 288 aa11.2□□□□□ -0.62
SHMT2-212ENST00000554467 OR13F1Q8NGS4 319 aa11.2□□□□□ -0.62
SHMT2-212ENST00000554467 NETO1Q8TDF5 533 aa11.2□□□□□ -0.62
SHMT2-212ENST00000554467 TMEM121BQ9BXQ6 578 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-212ENST00000554467 KAT8Q9H7Z6 458 aaKnown RBP11.2□□□□□ -0.62
SHMT2-212ENST00000554467 RUVBL1Q9Y265 456 aaKnown RBP11.2□□□□□ -0.62
SHMT2-212ENST00000554467 DGKBQ9Y6T7 804 aa11.2□□□□□ -0.62
SHMT2-212ENST00000554467 ELOVL7A1L3X0 281 aa11.2□□□□□ -0.62
SHMT2-212ENST00000554467 NARSO43776 548 aaKnown RBP11.2□□□□□ -0.62
SHMT2-212ENST00000554467 SERPIND1P05546 499 aa11.2□□□□□ -0.62
SHMT2-212ENST00000554467 CEACAM5P06731 702 aa11.2□□□□□ -0.62
SHMT2-212ENST00000554467 ANXA6P08133 673 aa11.2□□□□□ -0.62
SHMT2-212ENST00000554467 CCNA2P20248 432 aa11.2□□□□□ -0.62
SHMT2-212ENST00000554467 PRPS1L1P21108 318 aa11.2□□□□□ -0.62
SHMT2-212ENST00000554467 PRPH2P23942 346 aa11.2□□□□□ -0.62
SHMT2-212ENST00000554467 ACSL1P33121 698 aa11.2□□□□□ -0.62
SHMT2-212ENST00000554467 RPS21P63220 83 aaKnown RBP11.2□□□□□ -0.62
SHMT2-212ENST00000554467 MLF2Q15773 248 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-212ENST00000554467 CARTPTQ16568 116 aa11.2□□□□□ -0.62
SHMT2-212ENST00000554467 SLC36A3Q495N2 470 aa11.2□□□□□ -0.62
SHMT2-212ENST00000554467 AASDHQ4L235 1098 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-212ENST00000554467 ZNF385BQ569K4 471 aa11.2□□□□□ -0.62
SHMT2-212ENST00000554467 TBPL2Q6SJ96 375 aa11.2□□□□□ -0.62
SHMT2-212ENST00000554467 DCUN1D3Q8IWE4 304 aa11.2□□□□□ -0.62
SHMT2-212ENST00000554467 ABHD11Q8NFV4 315 aa11.2□□□□□ -0.62
SHMT2-212ENST00000554467 RPLP0P6Q8NHW5 317 aa11.2□□□□□ -0.62
SHMT2-212ENST00000554467 SNX19Q92543 992 aa11.2□□□□□ -0.62
SHMT2-212ENST00000554467 DUS3LQ96G46 650 aaKnown RBP11.2□□□□□ -0.62
SHMT2-212ENST00000554467 CPPED1Q9BRF8 314 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-212ENST00000554467 KCNH6Q9H252 994 aa11.2□□□□□ -0.62
SHMT2-212ENST00000554467 DMRT3Q9NQL9 472 aa11.2□□□□□ -0.62
SHMT2-212ENST00000554467 ITM2CQ9NQX7 267 aa11.2□□□□□ -0.62
SHMT2-212ENST00000554467 KLHL20Q9Y2M5 609 aa11.2□□□□□ -0.62
SHMT2-212ENST00000554467 PLXND1Q9Y4D7 1925 aa11.2□□□□□ -0.62
SHMT2-212ENST00000554467 TRBV5-3A0A0A0MS03 114 aa11.19□□□□□ -0.62
SHMT2-212ENST00000554467 C2CD4DB7Z1M9 353 aa11.19□□□□□ -0.62
SHMT2-212ENST00000554467 CXCR6O00574 342 aa11.19□□□□□ -0.62
SHMT2-212ENST00000554467 GMNNO75496 209 aa11.19□□□□□ -0.62
SHMT2-212ENST00000554467 ENGP17813 658 aa11.19□□□□□ -0.62
SHMT2-212ENST00000554467 TNFRSF4P43489 277 aa11.19□□□□□ -0.62
SHMT2-212ENST00000554467 MERTKQ12866 999 aa11.19□□□□□ -0.62
SHMT2-212ENST00000554467 CLCA4Q14CN2 919 aa11.19□□□□□ -0.62
SHMT2-212ENST00000554467 TPRG1LQ5T0D9 272 aa11.19□□□□□ -0.62
SHMT2-212ENST00000554467 ZCCHC8Q6NZY4 707 aaKnown RBP11.19□□□□□ -0.62
SHMT2-212ENST00000554467 ANGPTL8Q6UXH0 198 aa11.19□□□□□ -0.62
SHMT2-212ENST00000554467 TMEM92Q6UXU6 159 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms