RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 BCDIN3DQ7Z5W3 292 aaKnown RBP5.36□□□□□ -1.55
LIMA1-215ENST00000552823 SPRED1Q7Z699 444 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 DCP2Q8IU60 420 aaKnown RBP5.36□□□□□ -1.55
LIMA1-215ENST00000552823 P3H2Q8IVL5 708 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 RIMKLAQ8IXN7 391 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 CCDC116Q8IYX3 515 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 OR8J3Q8NGG0 315 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 OR8K5Q8NH50 307 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 FAM81AQ8TBF8 368 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 CSGALNACT1Q8TDX6 532 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 C16orf78Q8WTQ4 265 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 PROX1Q92786 737 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 RPL3LQ92901 407 aaKnown RBP5.36□□□□□ -1.55
LIMA1-215ENST00000552823 TIFAQ96CG3 184 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 CEP295NLQ96MC4 621 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 ASB16Q96NS5 453 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 VPS13AQ96RL7 3174 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 MYADMQ96S97 322 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 NPLQ9BXD5 320 aaPredicted RBP5.36□□□□□ -1.55
LIMA1-215ENST00000552823 ZDHHC5Q9C0B5 715 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 CEP44Q9C0F1 390 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 SLC6A16Q9GZN6 736 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 C11orf16Q9NQ32 467 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 THUMPD1Q9NXG2 353 aaKnown RBP5.36□□□□□ -1.55
LIMA1-215ENST00000552823 CLDND1Q9NY35 253 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 TAS2R16Q9NYV7 291 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 NDRG2Q9UN36 371 aaKnown RBP5.36□□□□□ -1.55
LIMA1-215ENST00000552823 FAM32AQ9Y421 112 aaKnown RBP5.36□□□□□ -1.55
LIMA1-215ENST00000552823 NEUROG3Q9Y4Z2 214 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 PLXNA3P51805 1871 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 A0A0J9YVX5 310 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 EDDM13A0A1B0GTR0 161 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 C1QTNF3-AMACRE9PGA6 284 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 H3BN98 237 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 TNFRSF11BO00300 401 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 RASGRP1O95267 797 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 SOD1P00441 154 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 TNNI3P19429 210 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 MYF6P23409 242 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 C21orf33P30042 268 aaPredicted RBP5.36□□□□□ -1.55
LIMA1-215ENST00000552823 MAPK9P45984 424 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 PRLHRP49683 370 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 VBP1P61758 197 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 GRIK2Q13002 908 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 APOFQ13790 326 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 NPTX1Q15818 432 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 CCDC85BQ15834 202 aaPredicted RBP5.36□□□□□ -1.55
LIMA1-215ENST00000552823 SOWAHCQ53LP3 525 aaPredicted RBP5.36□□□□□ -1.55
LIMA1-215ENST00000552823 PRSS36Q5K4E3 855 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 C6orf141Q5SZD1 244 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 INTS11Q5TA45 600 aaKnown RBP5.36□□□□□ -1.55
LIMA1-215ENST00000552823 C16orf87Q6PH81 154 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 PTRH1Q86Y79 214 aaKnown RBP5.36□□□□□ -1.55
LIMA1-215ENST00000552823 ZZZ3Q8IYH5 903 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 TCAIMQ8N3R3 496 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 AADATQ8N5Z0 425 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 ZNF614Q8N883 585 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 RAD51AP1Q96B01 352 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 INSM2Q96T92 566 aaPredicted RBP5.36□□□□□ -1.55
LIMA1-215ENST00000552823 FEVQ99581 238 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 CFHR5Q9BXR6 569 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 RBCK1Q9BYM8 510 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 KLHL31Q9H511 634 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 EXOSC4Q9NPD3 245 aaKnown RBP5.36□□□□□ -1.55
LIMA1-215ENST00000552823 TEX10Q9NXF1 929 aaPredicted RBP5.36□□□□□ -1.55
LIMA1-215ENST00000552823 IL20RAQ9UHF4 553 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 IRAK3Q9Y616 596 aa5.36□□□□□ -1.55
LIMA1-215ENST00000552823 POM121BA6NF01 834 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 AGAP14A8MT82 685 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 PCDH17O14917 1159 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 SCAMP2O15127 329 aaKnown RBP5.35□□□□□ -1.55
LIMA1-215ENST00000552823 HYAL3O43820 417 aaPredicted RBP5.35□□□□□ -1.55
LIMA1-215ENST00000552823 PSIP1O75475 530 aaKnown RBP5.35□□□□□ -1.55
LIMA1-215ENST00000552823 LCKP06239 509 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 MLLT10P55197 1068 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 LSM11P83369 360 aaKnown RBP eCLIP5.35□□□□□ -1.55
LIMA1-215ENST00000552823 MLLT1Q03111 559 aaPredicted RBP5.35□□□□□ -1.55
LIMA1-215ENST00000552823 SRSF11Q05519 484 aaKnown RBP5.35□□□□□ -1.55
LIMA1-215ENST00000552823 ELP6Q0PNE2 266 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 CSTF3Q12996 717 aaKnown RBP5.35□□□□□ -1.55
LIMA1-215ENST00000552823 SRSF5Q13243 272 aaKnown RBP5.35□□□□□ -1.55
LIMA1-215ENST00000552823 ITGADQ13349 1161 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 SCARB2Q14108 478 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 RGNQ15493 299 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 CYP2A13Q16696 494 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 BROXQ5VW32 411 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 TTC23Q5W5X9 447 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 GALNT18Q6P9A2 607 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 NXPE4Q6UWF7 544 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 CEACAM20Q6UY09 585 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 PTOV1Q86YD1 416 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 SLC5A8Q8N695 610 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 L3MBTL4Q8NA19 623 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 KCT2Q8NC54 265 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 C7orf57Q8NEG2 295 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 OR5K1Q8NHB7 308 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 WDR20Q8TBZ3 569 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 TSPEARQ8WU66 669 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 STON2Q8WXE9 905 aa5.35□□□□□ -1.55
LIMA1-215ENST00000552823 RLN3Q8WXF3 142 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms