RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 RNF144AP50876 292 aaPredicted RBP15.68■□□□□ 0.1
CUX1-213ENST00000549414 LINC01599Q8WXQ3 324 aa15.68■□□□□ 0.1
CUX1-213ENST00000549414 EZH1Q92800 747 aaPredicted RBP15.68■□□□□ 0.1
CUX1-213ENST00000549414 BTBD1Q9H0C5 482 aa15.68■□□□□ 0.1
CUX1-213ENST00000549414 TRIM39Q9HCM9 518 aa15.68■□□□□ 0.1
CUX1-213ENST00000549414 MKL2Q9ULH7 1088 aa15.68■□□□□ 0.1
CUX1-213ENST00000549414 OR5F1O95221 314 aa15.67■□□□□ 0.1
CUX1-213ENST00000549414 ENTPD1P49961 510 aa15.67■□□□□ 0.1
CUX1-213ENST00000549414 ITPRIPL2Q3MIP1 535 aa15.67■□□□□ 0.1
CUX1-213ENST00000549414 MANEALQ5VSG8 457 aa15.67■□□□□ 0.1
CUX1-213ENST00000549414 ZNF773Q6PK81 442 aa15.67■□□□□ 0.1
CUX1-213ENST00000549414 IZUMO1Q8IYV9 350 aa15.67■□□□□ 0.1
CUX1-213ENST00000549414 HPS1Q92902 700 aa15.67■□□□□ 0.1
CUX1-213ENST00000549414 FOXJ1Q92949 421 aa15.67■□□□□ 0.1
CUX1-213ENST00000549414 LOXHD1Q8IVV2 1947 aa15.67■□□□□ 0.1
CUX1-213ENST00000549414 A0A1W2PQU0 124 aa15.67■□□□□ 0.1
CUX1-213ENST00000549414 MID1O15344 667 aa15.67■□□□□ 0.1
CUX1-213ENST00000549414 GNAO1P09471 354 aa15.67■□□□□ 0.1
CUX1-213ENST00000549414 PABPC4LP0CB38 370 aaKnown RBP15.67■□□□□ 0.1
CUX1-213ENST00000549414 EN2P19622 333 aaPredicted RBP15.67■□□□□ 0.1
CUX1-213ENST00000549414 TPP2P29144 1249 aaPredicted RBP15.67■□□□□ 0.1
CUX1-213ENST00000549414 RPS3AP61247 264 aaKnown RBP15.67■□□□□ 0.1
CUX1-213ENST00000549414 KCNC3Q14003 757 aa15.67■□□□□ 0.1
CUX1-213ENST00000549414 LAPTM4BQ86VI4 370 aa15.67■□□□□ 0.1
CUX1-213ENST00000549414 ANKFN1Q8N957 763 aa15.67■□□□□ 0.1
CUX1-213ENST00000549414 PROKR1Q8TCW9 393 aa15.67■□□□□ 0.1
CUX1-213ENST00000549414 NETO1Q8TDF5 533 aa15.67■□□□□ 0.1
CUX1-213ENST00000549414 LRIG1Q96JA1 1093 aa15.67■□□□□ 0.1
CUX1-213ENST00000549414 RAB11FIP5Q9BXF6 653 aa15.67■□□□□ 0.1
CUX1-213ENST00000549414 EXO5Q9H790 373 aa15.67■□□□□ 0.1
CUX1-213ENST00000549414 CDC14AQ9UNH5 594 aa15.67■□□□□ 0.1
CUX1-213ENST00000549414 COL11A2P13942 1736 aaPredicted RBP15.67■□□□□ 0.1
CUX1-213ENST00000549414 FAM186AA6NE01 2351 aa15.67■□□□□ 0.1
CUX1-213ENST00000549414 DENRO43583 198 aaKnown RBP15.67■□□□□ 0.1
CUX1-213ENST00000549414 CEBPBP17676 345 aa15.67■□□□□ 0.1
CUX1-213ENST00000549414 CD9P21926 228 aa15.67■□□□□ 0.1
CUX1-213ENST00000549414 C6orf141Q5SZD1 244 aa15.67■□□□□ 0.1
CUX1-213ENST00000549414 KIAA1614Q5VZ46 1190 aa15.67■□□□□ 0.1
CUX1-213ENST00000549414 FBXO15Q8NCQ5 510 aaPredicted RBP15.67■□□□□ 0.1
CUX1-213ENST00000549414 FRS2Q8WU20 508 aa15.67■□□□□ 0.1
CUX1-213ENST00000549414 CAPSLQ8WWF8 208 aa15.67■□□□□ 0.1
CUX1-213ENST00000549414 ACPTQ9BZG2 426 aa15.67■□□□□ 0.1
CUX1-213ENST00000549414 RC3H2Q9HBD1 1191 aaKnown RBP15.67■□□□□ 0.1
CUX1-213ENST00000549414 DNAJC27Q9NZQ0 273 aa15.67■□□□□ 0.1
CUX1-213ENST00000549414 SHROOM3Q8TF72 1996 aa15.67■□□□□ 0.1
CUX1-213ENST00000549414 ARHGEF33A8MVX0 844 aa15.66■□□□□ 0.1
CUX1-213ENST00000549414 PENKP01210 267 aaPredicted RBP15.66■□□□□ 0.1
CUX1-213ENST00000549414 RAB39AQ14964 217 aa15.66■□□□□ 0.1
CUX1-213ENST00000549414 ZNF630Q2M218 657 aaPredicted RBP15.66■□□□□ 0.1
CUX1-213ENST00000549414 SH2D5Q6ZV89 423 aa15.66■□□□□ 0.1
CUX1-213ENST00000549414 HTR3DQ70Z44 454 aa15.66■□□□□ 0.1
CUX1-213ENST00000549414 OR7G3Q8NG95 312 aa15.66■□□□□ 0.1
CUX1-213ENST00000549414 GATA6Q92908 595 aa15.66■□□□□ 0.1
CUX1-213ENST00000549414 DIRAS2Q96HU8 199 aa15.66■□□□□ 0.1
CUX1-213ENST00000549414 MALT1Q9UDY8 824 aa15.66■□□□□ 0.1
CUX1-213ENST00000549414 DOCK5Q9H7D0 1870 aa15.66■□□□□ 0.1
CUX1-213ENST00000549414 ABCB7O75027 752 aa15.66■□□□□ 0.1
CUX1-213ENST00000549414 PRAMEF12O95522 483 aa15.66■□□□□ 0.1
CUX1-213ENST00000549414 POLR2CP19387 275 aaPredicted RBP15.66■□□□□ 0.1
CUX1-213ENST00000549414 GGT1P19440 569 aa15.66■□□□□ 0.1
CUX1-213ENST00000549414 RPS3P23396 243 aaKnown RBP eCLIP15.66■□□□□ 0.1
CUX1-213ENST00000549414 PDHA2P29803 388 aa15.66■□□□□ 0.1
CUX1-213ENST00000549414 MAP2K4P45985 399 aa15.66■□□□□ 0.1
CUX1-213ENST00000549414 ZNF311Q5JNZ3 666 aa15.66■□□□□ 0.1
CUX1-213ENST00000549414 DUS1LQ6P1R4 473 aaKnown RBP15.66■□□□□ 0.1
CUX1-213ENST00000549414 ZNF551Q7Z340 670 aaPredicted RBP15.66■□□□□ 0.1
CUX1-213ENST00000549414 ADGRG5Q8IZF4 528 aa15.66■□□□□ 0.1
CUX1-213ENST00000549414 SIX5Q8N196 739 aa15.66■□□□□ 0.1
CUX1-213ENST00000549414 TTLQ8NG68 377 aa15.66■□□□□ 0.1
CUX1-213ENST00000549414 IGLV3-10A0A075B6K4 115 aa15.66■□□□□ 0.1
CUX1-213ENST00000549414 SMIM30A4D0T7 59 aa15.66■□□□□ 0.1
CUX1-213ENST00000549414 SLC16A5O15375 505 aa15.66■□□□□ 0.1
CUX1-213ENST00000549414 SDC1P18827 310 aa15.66■□□□□ 0.1
CUX1-213ENST00000549414 TUBA4AP68366 448 aa15.66■□□□□ 0.1
CUX1-213ENST00000549414 REEP3Q6NUK4 255 aa15.66■□□□□ 0.1
CUX1-213ENST00000549414 RTL4Q6ZR62 310 aa15.66■□□□□ 0.1
CUX1-213ENST00000549414 COMMD6Q7Z4G1 85 aa15.66■□□□□ 0.1
CUX1-213ENST00000549414 NUDT8Q8WV74 236 aa15.66■□□□□ 0.1
CUX1-213ENST00000549414 ISOC1Q96CN7 298 aa15.66■□□□□ 0.1
CUX1-213ENST00000549414 TRIB3Q96RU7 358 aa15.66■□□□□ 0.1
CUX1-213ENST00000549414 RBCK1Q9BYM8 510 aa15.66■□□□□ 0.1
CUX1-213ENST00000549414 POFUT2Q9Y2G5 429 aa15.66■□□□□ 0.1
CUX1-213ENST00000549414 PCDHB11Q9Y5F2 797 aa15.66■□□□□ 0.1
CUX1-213ENST00000549414 TTC3P53804 2025 aa15.66■□□□□ 0.1
CUX1-213ENST00000549414 E2F3O00716 465 aa15.66■□□□□ 0.1
CUX1-213ENST00000549414 CAPN5O15484 640 aaPredicted RBP15.66■□□□□ 0.1
CUX1-213ENST00000549414 SLC25A12O75746 678 aa15.66■□□□□ 0.1
CUX1-213ENST00000549414 APOL3O95236 402 aa15.66■□□□□ 0.1
CUX1-213ENST00000549414 MMP2P08253 660 aa15.66■□□□□ 0.1
CUX1-213ENST00000549414 HNRNPA1P09651 372 aaKnown RBP eCLIP15.66■□□□□ 0.1
CUX1-213ENST00000549414 ADRB3P13945 408 aa15.66■□□□□ 0.1
CUX1-213ENST00000549414 RPS6KA3P51812 740 aa15.66■□□□□ 0.1
CUX1-213ENST00000549414 VBP1P61758 197 aa15.66■□□□□ 0.1
CUX1-213ENST00000549414 ZNF542PQ5EBM4 170 aa15.66■□□□□ 0.1
CUX1-213ENST00000549414 COLEC12Q5KU26 742 aa15.66■□□□□ 0.1
CUX1-213ENST00000549414 FAM219BQ5XKK7 198 aa15.66■□□□□ 0.1
CUX1-213ENST00000549414 OR5AR1Q8NGP9 310 aa15.66■□□□□ 0.1
CUX1-213ENST00000549414 TRMT2BQ96GJ1 504 aaKnown RBP15.66■□□□□ 0.1
CUX1-213ENST00000549414 YTHDF1Q9BYJ9 559 aaKnown RBP15.66■□□□□ 0.1
CUX1-213ENST00000549414 DCSTAMPQ9H295 470 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms