RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 ITGA9Q13797 1035 aa3.6□□□□□ -1.83
VPS29-205ENST00000548539 PPA1Q15181 289 aa3.6□□□□□ -1.83
VPS29-205ENST00000548539 KRTAP24-1Q3LI83 254 aa3.6□□□□□ -1.83
VPS29-205ENST00000548539 PWWP2BQ6NUJ5 590 aa3.6□□□□□ -1.83
VPS29-205ENST00000548539 PSRC1Q6PGN9 363 aaPredicted RBP3.6□□□□□ -1.83
VPS29-205ENST00000548539 BHLHB9Q6PI77 547 aa3.6□□□□□ -1.83
VPS29-205ENST00000548539 TRMT11Q7Z4G4 463 aaKnown RBP3.6□□□□□ -1.83
VPS29-205ENST00000548539 KLHDC8BQ8IXV7 354 aa3.6□□□□□ -1.83
VPS29-205ENST00000548539 DCLK2Q8N568 766 aa3.6□□□□□ -1.83
VPS29-205ENST00000548539 OR10G8Q8NGN5 311 aa3.6□□□□□ -1.83
VPS29-205ENST00000548539 GATAD1Q8WUU5 269 aa3.6□□□□□ -1.83
VPS29-205ENST00000548539 GGHQ92820 318 aa3.6□□□□□ -1.83
VPS29-205ENST00000548539 CCDC47Q96A33 483 aaKnown RBP3.6□□□□□ -1.83
VPS29-205ENST00000548539 MAGED4Q96JG8 741 aa3.6□□□□□ -1.83
VPS29-205ENST00000548539 FUCA2Q9BTY2 467 aa3.6□□□□□ -1.83
VPS29-205ENST00000548539 C3orf14Q9HBI5 128 aa3.6□□□□□ -1.83
VPS29-205ENST00000548539 RNF186Q9NXI6 227 aa3.6□□□□□ -1.83
VPS29-205ENST00000548539 MAD2L2Q9UI95 211 aa3.6□□□□□ -1.83
VPS29-205ENST00000548539 APPL1Q9UKG1 709 aa3.6□□□□□ -1.83
VPS29-205ENST00000548539 ELF5Q9UKW6 265 aaPredicted RBP3.6□□□□□ -1.83
VPS29-205ENST00000548539 PLCL2Q9UPR0 1127 aa3.6□□□□□ -1.83
VPS29-205ENST00000548539 SATB2Q9UPW6 733 aa3.6□□□□□ -1.83
VPS29-205ENST00000548539 TCF19Q9Y242 345 aa3.6□□□□□ -1.83
VPS29-205ENST00000548539 PYGO1Q9Y3Y4 419 aa3.6□□□□□ -1.83
VPS29-205ENST00000548539 TEX264Q9Y6I9 313 aa3.6□□□□□ -1.83
VPS29-205ENST00000548539 NPHP3Q7Z494 1330 aa3.6□□□□□ -1.83
VPS29-205ENST00000548539 A0A087WZ39 114 aa3.59□□□□□ -1.83
VPS29-205ENST00000548539 C2orf92A0A1B0GVN3 265 aa3.59□□□□□ -1.83
VPS29-205ENST00000548539 ERI2A8K979 691 aaKnown RBP3.59□□□□□ -1.83
VPS29-205ENST00000548539 MAGEB2O15479 319 aa3.59□□□□□ -1.83
VPS29-205ENST00000548539 PSMD3O43242 534 aa3.59□□□□□ -1.83
VPS29-205ENST00000548539 ZBTB14O43829 449 aa3.59□□□□□ -1.83
VPS29-205ENST00000548539 BCAS2O75934 225 aaPredicted RBP3.59□□□□□ -1.83
VPS29-205ENST00000548539 CLDN1O95832 211 aa3.59□□□□□ -1.83
VPS29-205ENST00000548539 GAS8O95995 478 aa3.59□□□□□ -1.83
VPS29-205ENST00000548539 B4GALT1P15291 398 aa3.59□□□□□ -1.83
VPS29-205ENST00000548539 UGT1A6P19224 532 aa3.59□□□□□ -1.83
VPS29-205ENST00000548539 CDKN1AP38936 164 aa3.59□□□□□ -1.83
VPS29-205ENST00000548539 SLC1A3P43003 542 aa3.59□□□□□ -1.83
VPS29-205ENST00000548539 PAX9P55771 341 aa3.59□□□□□ -1.83
VPS29-205ENST00000548539 GNB1P62873 340 aa3.59□□□□□ -1.83
VPS29-205ENST00000548539 TRA2AQ13595 282 aaKnown RBP eCLIP3.59□□□□□ -1.83
VPS29-205ENST00000548539 TEAD2Q15562 447 aa3.59□□□□□ -1.83
VPS29-205ENST00000548539 ARHGAP17Q68EM7 881 aa3.59□□□□□ -1.83
VPS29-205ENST00000548539 ETFRF1Q6IPR1 90 aa3.59□□□□□ -1.83
VPS29-205ENST00000548539 SLC27A4Q6P1M0 643 aa3.59□□□□□ -1.83
VPS29-205ENST00000548539 ZNF410Q86VK4 478 aa3.59□□□□□ -1.83
VPS29-205ENST00000548539 SPEM1Q8N4L4 309 aa3.59□□□□□ -1.83
VPS29-205ENST00000548539 OR6S1Q8NH40 331 aa3.59□□□□□ -1.83
VPS29-205ENST00000548539 ULK4Q96C45 1275 aa3.59□□□□□ -1.83
VPS29-205ENST00000548539 BPIFA2Q96DR5 249 aa3.59□□□□□ -1.83
VPS29-205ENST00000548539 FBXO17Q96EF6 278 aa3.59□□□□□ -1.83
VPS29-205ENST00000548539 ZNF560Q96MR9 790 aa3.59□□□□□ -1.83
VPS29-205ENST00000548539 TMEM237Q96Q45 408 aa3.59□□□□□ -1.83
VPS29-205ENST00000548539 UBAC1Q9BSL1 405 aa3.59□□□□□ -1.83
VPS29-205ENST00000548539 NTMT1Q9BV86 223 aa3.59□□□□□ -1.83
VPS29-205ENST00000548539 TDRD1Q9BXT4 1180 aaKnown RBP3.59□□□□□ -1.83
VPS29-205ENST00000548539 ZCCHC3Q9NUD5 404 aaKnown RBP3.59□□□□□ -1.83
VPS29-205ENST00000548539 CYP39A1Q9NYL5 469 aa3.59□□□□□ -1.83
VPS29-205ENST00000548539 DBF4Q9UBU7 674 aaPredicted RBP3.59□□□□□ -1.83
VPS29-205ENST00000548539 PPP1R3CQ9UQK1 317 aa3.59□□□□□ -1.83
VPS29-205ENST00000548539 TDRKHQ9Y2W6 561 aaKnown RBP3.59□□□□□ -1.83
VPS29-205ENST00000548539 SELENOKQ9Y6D0 94 aa3.59□□□□□ -1.83
VPS29-205ENST00000548539 SMCHD1A6NHR9 2005 aa3.58□□□□□ -1.84
VPS29-205ENST00000548539 TMEM129A0AVI4 362 aa3.58□□□□□ -1.84
VPS29-205ENST00000548539 CHUKO15111 745 aa3.58□□□□□ -1.84
VPS29-205ENST00000548539 B4GAT1O43505 415 aa3.58□□□□□ -1.84
VPS29-205ENST00000548539 LRCH4O75427 683 aa3.58□□□□□ -1.84
VPS29-205ENST00000548539 KHDRBS3O75525 346 aaKnown RBP3.58□□□□□ -1.84
VPS29-205ENST00000548539 KRT33AO76009 404 aa3.58□□□□□ -1.84
VPS29-205ENST00000548539 VTNP04004 478 aa3.58□□□□□ -1.84
VPS29-205ENST00000548539 SP1P08047 785 aa3.58□□□□□ -1.84
VPS29-205ENST00000548539 AADACP22760 399 aa3.58□□□□□ -1.84
VPS29-205ENST00000548539 CTNNA2P26232 953 aa3.58□□□□□ -1.84
VPS29-205ENST00000548539 OPRL1P41146 370 aa3.58□□□□□ -1.84
VPS29-205ENST00000548539 CEACAM7Q14002 265 aa3.58□□□□□ -1.84
VPS29-205ENST00000548539 EFTUD2Q15029 972 aaKnown RBP eCLIP3.58□□□□□ -1.84
VPS29-205ENST00000548539 STXBP2Q15833 593 aa3.58□□□□□ -1.84
VPS29-205ENST00000548539 ATP1A1-AS1Q5TC04 95 aa3.58□□□□□ -1.84
VPS29-205ENST00000548539 MACC1Q6ZN28 852 aa3.58□□□□□ -1.84
VPS29-205ENST00000548539 C15orf52Q6ZUT6 534 aaKnown RBP3.58□□□□□ -1.84
VPS29-205ENST00000548539 RABEPKQ7Z6M1 372 aa3.58□□□□□ -1.84
VPS29-205ENST00000548539 TEX26Q8N6G2 289 aa3.58□□□□□ -1.84
VPS29-205ENST00000548539 RTL3Q8N8U3 475 aaKnown RBP3.58□□□□□ -1.84
VPS29-205ENST00000548539 DDHD1Q8NEL9 900 aa3.58□□□□□ -1.84
VPS29-205ENST00000548539 OR8H1Q8NGG4 311 aa3.58□□□□□ -1.84
VPS29-205ENST00000548539 SPATA18Q8TC71 538 aa3.58□□□□□ -1.84
VPS29-205ENST00000548539 TMEM190Q8WZ59 177 aa3.58□□□□□ -1.84
VPS29-205ENST00000548539 SMPDL3AQ92484 453 aa3.58□□□□□ -1.84
VPS29-205ENST00000548539 CFAP36Q96G28 342 aa3.58□□□□□ -1.84
VPS29-205ENST00000548539 LRR1Q96L50 414 aa3.58□□□□□ -1.84
VPS29-205ENST00000548539 FAM218AQ96MZ4 157 aa3.58□□□□□ -1.84
VPS29-205ENST00000548539 IL12RB2Q99665 862 aa3.58□□□□□ -1.84
VPS29-205ENST00000548539 PITPNM3Q9BZ71 974 aa3.58□□□□□ -1.84
VPS29-205ENST00000548539 MAGEF1Q9HAY2 307 aa3.58□□□□□ -1.84
VPS29-205ENST00000548539 FAM212BQ9NTI7 297 aaPredicted RBP3.58□□□□□ -1.84
VPS29-205ENST00000548539 COMMD8Q9NX08 183 aa3.58□□□□□ -1.84
VPS29-205ENST00000548539 ETV7Q9Y603 341 aa3.58□□□□□ -1.84
VPS29-205ENST00000548539 GPRASP1Q5JY77 1395 aa3.58□□□□□ -1.84
VPS29-205ENST00000548539 DISP3Q9P2K9 1392 aa3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms