RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 TMEM121BQ9BXQ6 578 aaPredicted RBP17.75■□□□□ 0.43
PRPF40B-208ENST00000548436 NAALAD2Q9Y3Q0 740 aa17.75■□□□□ 0.43
PRPF40B-208ENST00000548436 CCDC88CQ9P219 2028 aa17.75■□□□□ 0.43
PRPF40B-208ENST00000548436 ANGPTL1O95841 491 aa17.75■□□□□ 0.43
PRPF40B-208ENST00000548436 TBX6O95947 436 aaPredicted RBP17.75■□□□□ 0.43
PRPF40B-208ENST00000548436 OPN1SWP03999 348 aa17.75■□□□□ 0.43
PRPF40B-208ENST00000548436 CCDC159P0C7I6 412 aa17.75■□□□□ 0.43
PRPF40B-208ENST00000548436 PCMT1P22061 227 aa17.75■□□□□ 0.43
PRPF40B-208ENST00000548436 DRD3P35462 400 aa17.75■□□□□ 0.43
PRPF40B-208ENST00000548436 TEAD4Q15561 434 aa17.75■□□□□ 0.43
PRPF40B-208ENST00000548436 DSG4Q86SJ6 1040 aa17.75■□□□□ 0.43
PRPF40B-208ENST00000548436 DCUN1D3Q8IWE4 304 aa17.75■□□□□ 0.43
PRPF40B-208ENST00000548436 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.75■□□□□ 0.43
PRPF40B-208ENST00000548436 C7orf61Q8IZ16 206 aa17.75■□□□□ 0.43
PRPF40B-208ENST00000548436 TTC29Q8NA56 475 aaPredicted RBP17.75■□□□□ 0.43
PRPF40B-208ENST00000548436 OR52N2Q8NGI0 321 aa17.75■□□□□ 0.43
PRPF40B-208ENST00000548436 NODALQ96S42 347 aa17.75■□□□□ 0.43
PRPF40B-208ENST00000548436 CERS4Q9HA82 394 aa17.75■□□□□ 0.43
PRPF40B-208ENST00000548436 THAP10Q9P2Z0 257 aaPredicted RBP17.75■□□□□ 0.43
PRPF40B-208ENST00000548436 PADI2Q9Y2J8 665 aa17.75■□□□□ 0.43
PRPF40B-208ENST00000548436 HEATR5BQ9P2D3 2071 aa17.75■□□□□ 0.43
PRPF40B-208ENST00000548436 DPM1O60762 260 aa17.74■□□□□ 0.43
PRPF40B-208ENST00000548436 C9P02748 559 aa17.74■□□□□ 0.43
PRPF40B-208ENST00000548436 IL3P08700 152 aa17.74■□□□□ 0.43
PRPF40B-208ENST00000548436 PTX3P26022 381 aaPredicted RBP17.74■□□□□ 0.43
PRPF40B-208ENST00000548436 FMO3P31513 532 aa17.74■□□□□ 0.43
PRPF40B-208ENST00000548436 SELENOWP63302 87 aa17.74■□□□□ 0.43
PRPF40B-208ENST00000548436 CDK3Q00526 305 aa17.74■□□□□ 0.43
PRPF40B-208ENST00000548436 RPA4Q13156 261 aa17.74■□□□□ 0.43
PRPF40B-208ENST00000548436 CAMK2GQ13555 558 aaPredicted RBP17.74■□□□□ 0.43
PRPF40B-208ENST00000548436 EGFLAMQ63HQ2 1017 aa17.74■□□□□ 0.43
PRPF40B-208ENST00000548436 FAHD1Q6P587 224 aa17.74■□□□□ 0.43
PRPF40B-208ENST00000548436 VITQ6UXI7 678 aa17.74■□□□□ 0.43
PRPF40B-208ENST00000548436 B3GNT8Q7Z7M8 397 aa17.74■□□□□ 0.43
PRPF40B-208ENST00000548436 ATG16L2Q8NAA4 619 aa17.74■□□□□ 0.43
PRPF40B-208ENST00000548436 SETD9Q8NE22 299 aa17.74■□□□□ 0.43
PRPF40B-208ENST00000548436 OR5AK3PQ8NH89 298 aa17.74■□□□□ 0.43
PRPF40B-208ENST00000548436 UBE2E3Q969T4 207 aa17.74■□□□□ 0.43
PRPF40B-208ENST00000548436 MUL1Q969V5 352 aa17.74■□□□□ 0.43
PRPF40B-208ENST00000548436 RAB7BQ96AH8 199 aa17.74■□□□□ 0.43
PRPF40B-208ENST00000548436 CHFRQ96EP1 664 aa17.74■□□□□ 0.43
PRPF40B-208ENST00000548436 CSF3RQ99062 836 aa17.74■□□□□ 0.43
PRPF40B-208ENST00000548436 KRT84Q9NSB2 600 aa17.74■□□□□ 0.43
PRPF40B-208ENST00000548436 NDRG4Q9ULP0 352 aaKnown RBP17.74■□□□□ 0.43
PRPF40B-208ENST00000548436 TSC22D4Q9Y3Q8 395 aa17.74■□□□□ 0.43
PRPF40B-208ENST00000548436 GMPPBQ9Y5P6 360 aa17.74■□□□□ 0.43
PRPF40B-208ENST00000548436 ATG2BQ96BY7 2078 aa17.74■□□□□ 0.43
PRPF40B-208ENST00000548436 DOCK8Q8NF50 2099 aa17.73■□□□□ 0.43
PRPF40B-208ENST00000548436 M0QX08 132 aa17.73■□□□□ 0.43
PRPF40B-208ENST00000548436 ERGP11308 486 aa17.73■□□□□ 0.43
PRPF40B-208ENST00000548436 TNFRSF1BP20333 461 aa17.73■□□□□ 0.43
PRPF40B-208ENST00000548436 GJA4P35212 333 aa17.73■□□□□ 0.43
PRPF40B-208ENST00000548436 ENTPD1P49961 510 aa17.73■□□□□ 0.43
PRPF40B-208ENST00000548436 TAS2R38P59533 333 aa17.73■□□□□ 0.43
PRPF40B-208ENST00000548436 PDGFRLQ15198 375 aa17.73■□□□□ 0.43
PRPF40B-208ENST00000548436 WSCD2Q2TBF2 565 aa17.73■□□□□ 0.43
PRPF40B-208ENST00000548436 FAM124AQ86V42 546 aa17.73■□□□□ 0.43
PRPF40B-208ENST00000548436 LRRTM4Q86VH4 590 aa17.73■□□□□ 0.43
PRPF40B-208ENST00000548436 MAGED4Q96JG8 741 aa17.73■□□□□ 0.43
PRPF40B-208ENST00000548436 EPYCQ99645 322 aa17.73■□□□□ 0.43
PRPF40B-208ENST00000548436 DGCR6LQ9BY27 220 aa17.73■□□□□ 0.43
PRPF40B-208ENST00000548436 C1GALT1Q9NS00 363 aa17.73■□□□□ 0.43
PRPF40B-208ENST00000548436 KIF17Q9P2E2 1029 aa17.73■□□□□ 0.43
PRPF40B-208ENST00000548436 TAC3Q9UHF0 121 aa17.73■□□□□ 0.43
PRPF40B-208ENST00000548436 AP1M2Q9Y6Q5 423 aa17.73■□□□□ 0.43
PRPF40B-208ENST00000548436 NOL3O60936 208 aaKnown RBP17.73■□□□□ 0.43
PRPF40B-208ENST00000548436 EN2P19622 333 aaPredicted RBP17.73■□□□□ 0.43
PRPF40B-208ENST00000548436 CCNA2P20248 432 aa17.73■□□□□ 0.43
PRPF40B-208ENST00000548436 TPP2P29144 1249 aaPredicted RBP17.73■□□□□ 0.43
PRPF40B-208ENST00000548436 RRM2P31350 389 aa17.73■□□□□ 0.43
PRPF40B-208ENST00000548436 RPL3P39023 403 aaKnown RBP17.73■□□□□ 0.43
PRPF40B-208ENST00000548436 RPS6KA3P51812 740 aa17.73■□□□□ 0.43
PRPF40B-208ENST00000548436 PHEXP78562 749 aa17.73■□□□□ 0.43
PRPF40B-208ENST00000548436 NFATC3Q12968 1075 aa17.73■□□□□ 0.43
PRPF40B-208ENST00000548436 SLC5A12Q1EHB4 618 aa17.73■□□□□ 0.43
PRPF40B-208ENST00000548436 GCNT6Q5T4J0 391 aa17.73■□□□□ 0.43
PRPF40B-208ENST00000548436 FAM180BQ6P0A1 224 aa17.73■□□□□ 0.43
PRPF40B-208ENST00000548436 ARHGAP22Q7Z5H3 698 aa17.73■□□□□ 0.43
PRPF40B-208ENST00000548436 SLC9B2Q86UD5 537 aa17.73■□□□□ 0.43
PRPF40B-208ENST00000548436 OR5K2Q8NHB8 316 aa17.73■□□□□ 0.43
PRPF40B-208ENST00000548436 NFKBIDQ8NI38 313 aa17.73■□□□□ 0.43
PRPF40B-208ENST00000548436 TANKQ92844 425 aa17.73■□□□□ 0.43
PRPF40B-208ENST00000548436 SLC6A16Q9GZN6 736 aa17.73■□□□□ 0.43
PRPF40B-208ENST00000548436 CCDC90BQ9GZT6 254 aa17.73■□□□□ 0.43
PRPF40B-208ENST00000548436 SFXN1Q9H9B4 322 aa17.73■□□□□ 0.43
PRPF40B-208ENST00000548436 TMEM184CQ9NVA4 438 aa17.73■□□□□ 0.43
PRPF40B-208ENST00000548436 CUEDC1Q9NWM3 386 aaPredicted RBP17.73■□□□□ 0.43
PRPF40B-208ENST00000548436 TAS2R9Q9NYW1 312 aa17.73■□□□□ 0.43
PRPF40B-208ENST00000548436 NDUFAF4Q9P032 175 aa17.73■□□□□ 0.43
PRPF40B-208ENST00000548436 TAAR2Q9P1P5 351 aa17.73■□□□□ 0.43
PRPF40B-208ENST00000548436 SNX5Q9Y5X3 404 aa17.73■□□□□ 0.43
PRPF40B-208ENST00000548436 MID1O15344 667 aa17.72■□□□□ 0.43
PRPF40B-208ENST00000548436 INMTO95050 263 aa17.72■□□□□ 0.43
PRPF40B-208ENST00000548436 ZNF182P17025 639 aaPredicted RBP17.72■□□□□ 0.43
PRPF40B-208ENST00000548436 WASP42768 502 aa17.72■□□□□ 0.43
PRPF40B-208ENST00000548436 FCHO2Q0JRZ9 810 aa17.72■□□□□ 0.43
PRPF40B-208ENST00000548436 SCARB2Q14108 478 aa17.72■□□□□ 0.43
PRPF40B-208ENST00000548436 DUSP6Q16828 381 aa17.72■□□□□ 0.43
PRPF40B-208ENST00000548436 METRNLQ641Q3 311 aa17.72■□□□□ 0.43
PRPF40B-208ENST00000548436 RNF130Q86XS8 419 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms