RNA–Protein interactions for RNA: ENST00000536274.5

MCF2-210, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,461 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-210ENST00000536274 PCDH19Q8TAB3 1148 aa3.59□□□□□ -1.83
MCF2-210ENST00000536274 ZNF675Q8TD23 568 aa3.59□□□□□ -1.83
MCF2-210ENST00000536274 APH1BQ8WW43 257 aa3.59□□□□□ -1.83
MCF2-210ENST00000536274 NCLNQ969V3 563 aa3.59□□□□□ -1.83
MCF2-210ENST00000536274 MYLPFQ96A32 169 aa3.59□□□□□ -1.83
MCF2-210ENST00000536274 C18orf25Q96B23 403 aaPredicted RBP3.59□□□□□ -1.83
MCF2-210ENST00000536274 AURKBQ96GD4 344 aaPredicted RBP3.59□□□□□ -1.83
MCF2-210ENST00000536274 TRMT2BQ96GJ1 504 aaKnown RBP3.59□□□□□ -1.83
MCF2-210ENST00000536274 GMCL1Q96IK5 515 aa3.59□□□□□ -1.83
MCF2-210ENST00000536274 ART5Q96L15 291 aa3.59□□□□□ -1.83
MCF2-210ENST00000536274 AMDHD1Q96NU7 426 aa3.59□□□□□ -1.83
MCF2-210ENST00000536274 SERPINB11Q96P15 392 aa3.59□□□□□ -1.83
MCF2-210ENST00000536274 TSGA13Q96PP4 275 aa3.59□□□□□ -1.83
MCF2-210ENST00000536274 KCNC2Q96PR1 638 aa3.59□□□□□ -1.83
MCF2-210ENST00000536274 SMAD5Q99717 465 aaKnown RBP3.59□□□□□ -1.83
MCF2-210ENST00000536274 SARGQ9BW04 601 aa3.59□□□□□ -1.83
MCF2-210ENST00000536274 CD244Q9BZW8 370 aa3.59□□□□□ -1.83
MCF2-210ENST00000536274 ARHGAP39Q9C0H5 1083 aa3.59□□□□□ -1.83
MCF2-210ENST00000536274 NXF2Q9GZY0 626 aaKnown RBP3.59□□□□□ -1.83
MCF2-210ENST00000536274 BTBD1Q9H0C5 482 aa3.59□□□□□ -1.83
MCF2-210ENST00000536274 RNF208Q9H0X6 261 aa3.59□□□□□ -1.83
MCF2-210ENST00000536274 ABHD16BQ9H3Z7 469 aa3.59□□□□□ -1.83
MCF2-210ENST00000536274 RIMS4Q9H426 269 aaPredicted RBP3.59□□□□□ -1.83
MCF2-210ENST00000536274 TMEM8AQ9HCN3 771 aa3.59□□□□□ -1.83
MCF2-210ENST00000536274 NANSQ9NR45 359 aa3.59□□□□□ -1.83
MCF2-210ENST00000536274 PAK5Q9P286 719 aa3.59□□□□□ -1.83
MCF2-210ENST00000536274 A0A1W2PPE3 182 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 A0A1W2PQL4 384 aaPredicted RBP3.58□□□□□ -1.84
MCF2-210ENST00000536274 OR6C75A6NL08 312 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 CLDN24A6NM45 220 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 KCNK1O00180 336 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 PIP5K1BO14986 540 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 CD3EAPO15446 510 aaKnown RBP3.58□□□□□ -1.84
MCF2-210ENST00000536274 CHP2O43745 196 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 LANCL1O43813 399 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 VEGFDO43915 354 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 LCMT2O60294 686 aaKnown RBP3.58□□□□□ -1.84
MCF2-210ENST00000536274 SUPT7LO94864 414 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 CDRT1O95170 752 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 TRUB2O95900 331 aaKnown RBP3.58□□□□□ -1.84
MCF2-210ENST00000536274 C9P02748 559 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 SLC35E2BP0CK96 405 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 TSHRP16473 764 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 LBPP18428 481 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 PTGFRP43088 359 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 MAZP56270 477 aaKnown RBP3.58□□□□□ -1.84
MCF2-210ENST00000536274 CSNK2BP67870 215 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 CHRNB3Q05901 458 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 CACNB2Q08289 660 aaPredicted RBP3.58□□□□□ -1.84
MCF2-210ENST00000536274 ORC2Q13416 577 aaPredicted RBP3.58□□□□□ -1.84
MCF2-210ENST00000536274 RAB33AQ14088 237 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 GRB14Q14449 540 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 PAN2Q504Q3 1202 aaKnown RBP3.58□□□□□ -1.84
MCF2-210ENST00000536274 OR2B11Q5JQS5 317 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 CCNJQ5T5M9 372 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 FAM102BQ5T8I3 360 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 HES5Q5TA89 166 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 ZNF57Q68EA5 555 aaPredicted RBP3.58□□□□□ -1.84
MCF2-210ENST00000536274 HEATR6Q6AI08 1181 aaKnown RBP3.58□□□□□ -1.84
MCF2-210ENST00000536274 PIWIL4Q7Z3Z4 852 aaKnown RBP3.58□□□□□ -1.84
MCF2-210ENST00000536274 CLEC14AQ86T13 490 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 SLC22A9Q8IVM8 553 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 PYROXD2Q8N2H3 581 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 SYT14Q8NB59 555 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 ATAD1Q8NBU5 361 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 OR6S1Q8NH40 331 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 GATAD2BQ8WXI9 593 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 ESAMQ96AP7 390 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 TUBGCP3Q96CW5 907 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 HYLS1Q96M11 299 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 TMEM68Q96MH6 324 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 PKMYT1Q99640 499 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 HSD17B14Q9BPX1 270 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 ATG101Q9BSB4 218 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 RSRP1Q9BUV0 290 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 FICDQ9BVA6 458 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 ASPNQ9BXN1 380 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 SEMA4CQ9C0C4 833 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 ABCG8Q9H221 673 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 LINC00597Q9H2U6 94 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 CLEC4MQ9H2X3 399 aaPredicted RBP3.58□□□□□ -1.84
MCF2-210ENST00000536274 IKZF5Q9H5V7 419 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 GLOD4Q9HC38 313 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 BIN3Q9NQY0 253 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 SCN3BQ9NY72 215 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 NLGN3Q9NZ94 848 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 COMMD3Q9UBI1 195 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 ABCD2Q9UBJ2 740 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 KLHL21Q9UJP4 597 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 MRTO4Q9UKD2 239 aaKnown RBP3.58□□□□□ -1.84
MCF2-210ENST00000536274 ZFR2Q9UPR6 939 aaKnown RBP3.58□□□□□ -1.84
MCF2-210ENST00000536274 EXO1Q9UQ84 846 aaKnown RBP3.58□□□□□ -1.84
MCF2-210ENST00000536274 TPRKBQ9Y3C4 175 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 CFAP20Q9Y6A4 193 aaKnown RBP3.58□□□□□ -1.84
MCF2-210ENST00000536274 LAMA3Q16787 3333 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 TCRBV5S1A1TA0A578 114 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 FAM234BA2RU67 622 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 ANXA2P2A6NMY6 339 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 INMT-MINDY4F8WBC2 141 aa3.58□□□□□ -1.84
MCF2-210ENST00000536274 SLC28A1O00337 649 aa3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms