RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 ZNF8P17098 575 aaPredicted RBP18.49■□□□□ 0.55
VPS28-213ENST00000530983 S100A1P23297 94 aa18.49■□□□□ 0.55
VPS28-213ENST00000530983 PCYT1AP49585 367 aa18.49■□□□□ 0.55
VPS28-213ENST00000530983 SPIBQ01892 262 aa18.49■□□□□ 0.55
VPS28-213ENST00000530983 E2F2Q14209 437 aa18.49■□□□□ 0.55
VPS28-213ENST00000530983 SF3B4Q15427 424 aaKnown RBP eCLIP18.49■□□□□ 0.556e-8■■■■■ 27
VPS28-213ENST00000530983 C6orf183Q5T699 404 aa18.49■□□□□ 0.55
VPS28-213ENST00000530983 OTOP2Q7RTS6 562 aa18.49■□□□□ 0.55
VPS28-213ENST00000530983 TRAM1L1Q8N609 369 aa18.49■□□□□ 0.55
VPS28-213ENST00000530983 GOT1L1Q8NHS2 421 aaPredicted RBP18.49■□□□□ 0.55
VPS28-213ENST00000530983 PUM2Q8TB72 1066 aaKnown RBP eCLIP18.49■□□□□ 0.55
VPS28-213ENST00000530983 PRM3Q9NNZ6 103 aa18.49■□□□□ 0.55
VPS28-213ENST00000530983 ATP6V1HQ9UI12 483 aa18.49■□□□□ 0.55
VPS28-213ENST00000530983 POFUT2Q9Y2G5 429 aa18.49■□□□□ 0.55
VPS28-213ENST00000530983 TMEM98Q9Y2Y6 226 aa18.49■□□□□ 0.55
VPS28-213ENST00000530983 WASH3PC4AMC7 463 aa18.48■□□□□ 0.55
VPS28-213ENST00000530983 UPK1BO75841 260 aa18.48■□□□□ 0.55
VPS28-213ENST00000530983 CYP2A6P11509 494 aaPredicted RBP18.48■□□□□ 0.55
VPS28-213ENST00000530983 MICAQ29983 383 aa18.48■□□□□ 0.55
VPS28-213ENST00000530983 EXOC3L2Q2M3D2 409 aa18.48■□□□□ 0.55
VPS28-213ENST00000530983 IFI44LQ53G44 452 aa18.48■□□□□ 0.55
VPS28-213ENST00000530983 SLCO4C1Q6ZQN7 724 aa18.48■□□□□ 0.55
VPS28-213ENST00000530983 DDX53Q86TM3 631 aaKnown RBP18.48■□□□□ 0.55
VPS28-213ENST00000530983 LYSMD2Q8IV50 215 aa18.48■□□□□ 0.55
VPS28-213ENST00000530983 LGI4Q8N135 537 aa18.48■□□□□ 0.55
VPS28-213ENST00000530983 ZNF675Q8TD23 568 aa18.48■□□□□ 0.55
VPS28-213ENST00000530983 BHLHE41Q9C0J9 482 aaPredicted RBP18.48■□□□□ 0.55
VPS28-213ENST00000530983 TPK1Q9H3S4 243 aa18.48■□□□□ 0.55
VPS28-213ENST00000530983 EHD1Q9H4M9 534 aa18.48■□□□□ 0.55
VPS28-213ENST00000530983 PRRC2BQ5JSZ5 2229 aaKnown RBP18.48■□□□□ 0.55
VPS28-213ENST00000530983 SLC5A10A0PJK1 596 aa18.48■□□□□ 0.55
VPS28-213ENST00000530983 DSCR3O14972 297 aa18.48■□□□□ 0.55
VPS28-213ENST00000530983 GBAP04062 536 aa18.48■□□□□ 0.55
VPS28-213ENST00000530983 STSP08842 583 aa18.48■□□□□ 0.55
VPS28-213ENST00000530983 ANXA8P13928 327 aa18.48■□□□□ 0.55
VPS28-213ENST00000530983 PDHA2P29803 388 aa18.48■□□□□ 0.55
VPS28-213ENST00000530983 SLC13A2Q13183 592 aa18.48■□□□□ 0.55
VPS28-213ENST00000530983 COLEC12Q5KU26 742 aa18.48■□□□□ 0.55
VPS28-213ENST00000530983 USP43Q70EL4 1123 aa18.48■□□□□ 0.55
VPS28-213ENST00000530983 TMPRSS11BQ86T26 416 aa18.48■□□□□ 0.55
VPS28-213ENST00000530983 LACC1Q8IV20 430 aa18.48■□□□□ 0.55
VPS28-213ENST00000530983 CXorf40BQ96DE9 158 aa18.48■□□□□ 0.55
VPS28-213ENST00000530983 SLC35A5Q9BS91 424 aa18.48■□□□□ 0.55
VPS28-213ENST00000530983 ZSCAN5AQ9BUG6 496 aa18.48■□□□□ 0.55
VPS28-213ENST00000530983 REEP4Q9H6H4 257 aa18.48■□□□□ 0.55
VPS28-213ENST00000530983 AGAP5A6NIR3 686 aa18.47■□□□□ 0.55
VPS28-213ENST00000530983 NEDD8-MDP1E9PL57 170 aa18.47■□□□□ 0.55
VPS28-213ENST00000530983 TGM5O43548 720 aa18.47■□□□□ 0.55
VPS28-213ENST00000530983 LEFTY1O75610 366 aa18.47■□□□□ 0.55
VPS28-213ENST00000530983 C6orf47O95873 294 aa18.47■□□□□ 0.55
VPS28-213ENST00000530983 ADORA3P0DMS8 318 aa18.47■□□□□ 0.55
VPS28-213ENST00000530983 ZNF763Q0D2J5 394 aa18.47■□□□□ 0.55
VPS28-213ENST00000530983 LRRC74AQ0VAA2 488 aa18.47■□□□□ 0.55
VPS28-213ENST00000530983 SCARB2Q14108 478 aa18.47■□□□□ 0.55
VPS28-213ENST00000530983 CYP27C1Q4G0S4 372 aa18.47■□□□□ 0.55
VPS28-213ENST00000530983 OR9Q2Q8NGE9 314 aa18.47■□□□□ 0.55
VPS28-213ENST00000530983 NFKBIDQ8NI38 313 aa18.47■□□□□ 0.55
VPS28-213ENST00000530983 BTN2A2Q8WVV5 523 aa18.47■□□□□ 0.55
VPS28-213ENST00000530983 TIFAQ96CG3 184 aa18.47■□□□□ 0.55
VPS28-213ENST00000530983 RAD9AQ99638 391 aa18.47■□□□□ 0.55
VPS28-213ENST00000530983 TCF25Q9BQ70 676 aa18.47■□□□□ 0.55
VPS28-213ENST00000530983 C6orf62Q9GZU0 229 aaPredicted RBP18.47■□□□□ 0.55
VPS28-213ENST00000530983 ABCB10Q9NRK6 738 aa18.47■□□□□ 0.55
VPS28-213ENST00000530983 THSD1Q9NS62 852 aa18.47■□□□□ 0.55
VPS28-213ENST00000530983 ACSL6Q9UKU0 697 aa18.47■□□□□ 0.55
VPS28-213ENST00000530983 J3KTA2 159 aa18.46■□□□□ 0.55
VPS28-213ENST00000530983 M0R129 80 aa18.46■□□□□ 0.55
VPS28-213ENST00000530983 PTHP01270 115 aa18.46■□□□□ 0.55
VPS28-213ENST00000530983 DBTP11182 482 aaKnown RBP18.46■□□□□ 0.55
VPS28-213ENST00000530983 MC1RQ01726 317 aa18.46■□□□□ 0.55
VPS28-213ENST00000530983 MPEG1Q2M385 716 aa18.46■□□□□ 0.55
VPS28-213ENST00000530983 SOWAHCQ53LP3 525 aaPredicted RBP18.46■□□□□ 0.55
VPS28-213ENST00000530983 GCNT6Q5T4J0 391 aa18.46■□□□□ 0.55
VPS28-213ENST00000530983 MED27Q6P2C8 311 aa18.46■□□□□ 0.55
VPS28-213ENST00000530983 ARMCX6Q7L4S7 300 aa18.46■□□□□ 0.55
VPS28-213ENST00000530983 COMMD6Q7Z4G1 85 aa18.46■□□□□ 0.55
VPS28-213ENST00000530983 ARMC8Q8IUR7 673 aa18.46■□□□□ 0.55
VPS28-213ENST00000530983 OR52N2Q8NGI0 321 aa18.46■□□□□ 0.55
VPS28-213ENST00000530983 C17orf50Q8WW18 174 aa18.46■□□□□ 0.55
VPS28-213ENST00000530983 CIDECQ96AQ7 238 aaPredicted RBP18.46■□□□□ 0.55
VPS28-213ENST00000530983 NXF2Q9GZY0 626 aaKnown RBP18.46■□□□□ 0.55
VPS28-213ENST00000530983 RNF167Q9H6Y7 350 aa18.46■□□□□ 0.55
VPS28-213ENST00000530983 SPG21Q9NZD8 308 aa18.46■□□□□ 0.55
VPS28-213ENST00000530983 KLHL3Q9UH77 587 aa18.46■□□□□ 0.55
VPS28-213ENST00000530983 SLC6A14Q9UN76 642 aa18.46■□□□□ 0.55
VPS28-213ENST00000530983 SH2B3Q9UQQ2 575 aa18.46■□□□□ 0.55
VPS28-213ENST00000530983 KCNE2Q9Y6J6 123 aa18.46■□□□□ 0.55
VPS28-213ENST00000530983 TAF4O00268 1085 aa18.46■□□□□ 0.55
VPS28-213ENST00000530983 QSOX1O00391 747 aa18.46■□□□□ 0.55
VPS28-213ENST00000530983 TLL1O43897 1013 aa18.46■□□□□ 0.55
VPS28-213ENST00000530983 ATG13O75143 517 aa18.46■□□□□ 0.55
VPS28-213ENST00000530983 RPLP0P05388 317 aaKnown RBP18.46■□□□□ 0.55
VPS28-213ENST00000530983 PRLHRP49683 370 aa18.46■□□□□ 0.55
VPS28-213ENST00000530983 LIMK1P53667 647 aa18.46■□□□□ 0.55
VPS28-213ENST00000530983 FCHO2Q0JRZ9 810 aa18.46■□□□□ 0.55
VPS28-213ENST00000530983 CDC20Q12834 499 aa18.46■□□□□ 0.55
VPS28-213ENST00000530983 THOC7Q6I9Y2 204 aaKnown RBP18.46■□□□□ 0.55
VPS28-213ENST00000530983 ZNF605Q86T29 641 aa18.46■□□□□ 0.55
VPS28-213ENST00000530983 ADIPOR2Q86V24 386 aa18.46■□□□□ 0.55
VPS28-213ENST00000530983 DENND6BQ8NEG7 585 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms