RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 KLHL31Q9H511 634 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 ZNF768Q9H5H4 540 aaKnown RBP5.61□□□□□ -1.51
CD44-225ENST00000527326 MINDY3Q9H8M7 445 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 SLC28A3Q9HAS3 691 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 DUSP22Q9NRW4 184 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 AGPAT3Q9NRZ7 376 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 RBAKQ9NYW8 714 aaPredicted RBP5.61□□□□□ -1.51
CD44-225ENST00000527326 OR6C2Q9NZP2 312 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 KCMF1Q9P0J7 381 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 HCN3Q9P1Z3 774 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 MBD1Q9UIS9 605 aaPredicted RBP5.61□□□□□ -1.51
CD44-225ENST00000527326 ZNF112Q9UJU3 913 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 PCDHB10Q9UN67 800 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 NCKAP1Q9Y2A7 1128 aa5.61□□□□□ -1.51
CD44-225ENST00000527326 TAF1P21675 1872 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 TEX13CA0A0J9YWL9 993 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 FAM240BA0A1B0GVZ2 78 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 FAM234BA2RU67 622 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 PRAMEF22A3QJZ6 481 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 PRR19A6NJB7 356 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 FAM74A7A6NL05 159 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 D6RAR5 112 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 INMT-MINDY4F8WBC2 141 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 K7ERI5 159 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 CACNB4O00305 520 aaPredicted RBP5.6□□□□□ -1.51
CD44-225ENST00000527326 QSOX1O00391 747 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 SLC7A4O43246 635 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 CHP2O43745 196 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 XPNPEP2O43895 674 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 HPGDSO60760 199 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 MITFO75030 526 aaPredicted RBP5.6□□□□□ -1.51
CD44-225ENST00000527326 FBXO24O75426 580 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 USP2O75604 605 aaPredicted RBP5.6□□□□□ -1.51
CD44-225ENST00000527326 KRT33AO76009 404 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 MPC2O95563 127 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 PTBP3O95758 552 aaKnown RBP5.6□□□□□ -1.51
CD44-225ENST00000527326 NDUFB10O96000 172 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 MT-CYBP00156 380 aaPredicted RBP5.6□□□□□ -1.51
CD44-225ENST00000527326 APOC3P02656 99 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 C9P02748 559 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 GP1BAP07359 652 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 CHRM5P08912 532 aaPredicted RBP5.6□□□□□ -1.51
CD44-225ENST00000527326 CSF3P09919 207 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 LCP1P13796 627 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 NCF1P14598 390 aaPredicted RBP5.6□□□□□ -1.51
CD44-225ENST00000527326 TPSB2P20231 275 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 UBA1P22314 1058 aaKnown RBP5.6□□□□□ -1.51
CD44-225ENST00000527326 PAX6P26367 422 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 CRABP1P29762 137 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 CALCRP30988 508 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 MAGEA3P43357 314 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 ASPAP45381 313 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 GRIA4P48058 902 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 GCLMP48507 274 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 RGS19P49795 217 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 RORCP51449 518 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 KCNQ1P51787 676 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 VAMP7P51809 220 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 HUNKP57058 714 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 STARD6P59095 220 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 PTPN11Q06124 597 aaPredicted RBP5.6□□□□□ -1.51
CD44-225ENST00000527326 SOX4Q06945 474 aaPredicted RBP5.6□□□□□ -1.51
CD44-225ENST00000527326 ZNF155Q12901 538 aaPredicted RBP5.6□□□□□ -1.51
CD44-225ENST00000527326 ECH1Q13011 328 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 ILKQ13418 452 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 MTMR1Q13613 665 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 ALKBH1Q13686 389 aaKnown RBP5.6□□□□□ -1.51
CD44-225ENST00000527326 SEC23BQ15437 767 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 TPSAB1Q15661 275 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 CCDC85BQ15834 202 aaPredicted RBP5.6□□□□□ -1.51
CD44-225ENST00000527326 SLC14A2Q15849 920 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 ZNF79Q15937 498 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 TAZQ16635 292 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 FAM74A3Q4VXF1 159 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 KLHL22Q53GT1 634 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 ARL13AQ5H913 290 aaPredicted RBP5.6□□□□□ -1.51
CD44-225ENST00000527326 DNLZQ5SXM8 178 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 MARCH8Q5T0T0 291 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 B3GNTL1Q67FW5 361 aaPredicted RBP5.6□□□□□ -1.51
CD44-225ENST00000527326 PRR5LQ6MZQ0 368 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 ESRP1Q6NXG1 681 aaKnown RBP5.6□□□□□ -1.51
CD44-225ENST00000527326 METAP1DQ6UB28 335 aaPredicted RBP5.6□□□□□ -1.51
CD44-225ENST00000527326 TMEM107Q6UX40 140 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 FAM131AQ6UXB0 335 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 ZNF852Q6ZMS4 543 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 C3P1Q6ZMU1 363 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 ZNF367Q7RTV3 350 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 DPPA2Q7Z7J5 298 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 CLEC14AQ86T13 490 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 ANKRD46Q86W74 232 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 PAQR7Q86WK9 346 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 ZNF227Q86WZ6 799 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 TMEM17Q86X19 198 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 ZDHHC17Q8IUH5 632 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 ADHFE1Q8IWW8 467 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 FAM178BQ8IXR5 827 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 C1orf52Q8N6N3 182 aaKnown RBP5.6□□□□□ -1.51
CD44-225ENST00000527326 NAT16Q8N8M0 369 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 NIPA2Q8N8Q9 360 aa5.6□□□□□ -1.51
CD44-225ENST00000527326 C9orf43Q8TAL5 461 aaPredicted RBP5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms