RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 SCO2O43819 266 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 PDE9AO76083 593 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 ALPIP09923 528 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 ITGA2P17301 1181 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 ITGALP20701 1170 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 FEN1P39748 380 aaKnown RBP9.29□□□□□ -0.92
VCAN-210ENST00000513960 RORCP51449 518 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 CCL23P55773 120 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 LIPKQ5VXJ0 399 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 SLX4IPQ5VYV7 408 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 ATG9BQ674R7 924 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 KDM4DQ6B0I6 523 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 SERPINA9Q86WD7 417 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 FAM20CQ8IXL6 584 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 ZNF461Q8TAF7 563 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 SLC7A6Q92536 515 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 ZNF566Q969W8 418 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 OTULINQ96BN8 352 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 MYO19Q96H55 970 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 POLR2J2Q9GZM3 115 aaKnown RBP9.29□□□□□ -0.92
VCAN-210ENST00000513960 MAGIXQ9H6Y5 334 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 NLKQ9UBE8 527 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 SSR3Q9UNL2 185 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 PCDHGB1Q9Y5G3 927 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 BACE2Q9Y5Z0 518 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 OR7A17O14581 309 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 PRAMEF1O95521 474 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 INHAP05111 366 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 HMGA1P17096 107 aaKnown RBP9.29□□□□□ -0.92
VCAN-210ENST00000513960 HMGCLP35914 325 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 SRP54P61011 504 aaKnown RBP9.29□□□□□ -0.92
VCAN-210ENST00000513960 HOXC5Q00444 222 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 ALDH6A1Q02252 535 aaKnown RBP9.29□□□□□ -0.92
VCAN-210ENST00000513960 IL18Q14116 193 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 RETSATQ6NUM9 610 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 ZNF783Q6ZMS7 281 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 NLRP8Q86W28 1048 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 SPERTQ8NA61 448 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 HJURPQ8NCD3 748 aaPredicted RBP9.29□□□□□ -0.92
VCAN-210ENST00000513960 B3GNT7Q8NFL0 401 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 ZFYVE1Q9HBF4 777 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 NAALAD2Q9Y3Q0 740 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 PCDHGA6Q9Y5G7 932 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 SNTNA6NMZ2 147 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 H3BQ06 376 aaPredicted RBP9.29□□□□□ -0.92
VCAN-210ENST00000513960 MANBAO00462 879 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 PSMA3P25788 255 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 DDOSTP39656 456 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 CHRNEQ04844 493 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 BCL2L1Q07817 233 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 TBCEQ15813 527 aaPredicted RBP9.29□□□□□ -0.92
VCAN-210ENST00000513960 VMACQ2NL98 169 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 WSCD2Q2TBF2 565 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 PTCHD3Q3KNS1 767 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 ZC3H12BQ5HYM0 836 aaKnown RBP9.29□□□□□ -0.92
VCAN-210ENST00000513960 CCDC71Q8IV32 467 aaPredicted RBP9.29□□□□□ -0.92
VCAN-210ENST00000513960 CHPFQ8IZ52 775 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 RBFAQ8N0V3 343 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 ASB15Q8WXK1 588 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 WBP2Q969T9 261 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 PMEPA1Q969W9 287 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 CCDC32Q9BV29 185 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 KLF16Q9BXK1 252 aaPredicted RBP9.29□□□□□ -0.92
VCAN-210ENST00000513960 C11orf54Q9H0W9 315 aaPredicted RBP9.29□□□□□ -0.92
VCAN-210ENST00000513960 FAM83DQ9H4H8 585 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 NDRG4Q9ULP0 352 aaKnown RBP9.29□□□□□ -0.92
VCAN-210ENST00000513960 TBC1D24Q9ULP9 559 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 YIPF1Q9Y548 306 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 HSPE1-MOB4S4R3N1 261 aa9.29□□□□□ -0.92
VCAN-210ENST00000513960 GNG14A0A1W2PPG7 69 aa9.28□□□□□ -0.92
VCAN-210ENST00000513960 HNRNPCL2B2RXH8 293 aa9.28□□□□□ -0.92
VCAN-210ENST00000513960 CAPN5O15484 640 aaPredicted RBP9.28□□□□□ -0.92
VCAN-210ENST00000513960 DGKAP23743 735 aa9.28□□□□□ -0.92
VCAN-210ENST00000513960 UGT2B10P36537 528 aa9.28□□□□□ -0.92
VCAN-210ENST00000513960 CSKP41240 450 aa9.28□□□□□ -0.92
VCAN-210ENST00000513960 PTPN5P54829 565 aa9.28□□□□□ -0.92
VCAN-210ENST00000513960 AP1S1P61966 158 aa9.28□□□□□ -0.92
VCAN-210ENST00000513960 DNAJC22Q8N4W6 341 aa9.28□□□□□ -0.92
VCAN-210ENST00000513960 SH3KBP1Q96B97 665 aa9.28□□□□□ -0.92
VCAN-210ENST00000513960 SCLYQ96I15 445 aa9.28□□□□□ -0.92
VCAN-210ENST00000513960 OR2A14Q96R47 310 aa9.28□□□□□ -0.92
VCAN-210ENST00000513960 C2orf49Q9BVC5 232 aaPredicted RBP9.28□□□□□ -0.92
VCAN-210ENST00000513960 ATG10Q9H0Y0 220 aa9.28□□□□□ -0.92
VCAN-210ENST00000513960 LHX3Q9UBR4 397 aa9.28□□□□□ -0.92
VCAN-210ENST00000513960 PSORS1C1Q9UIG5 152 aa9.28□□□□□ -0.92
VCAN-210ENST00000513960 FRMPD3Q5JV73 1810 aa9.28□□□□□ -0.92
VCAN-210ENST00000513960 ARHGAP33O14559 1287 aa9.28□□□□□ -0.92
VCAN-210ENST00000513960 PQBP1O60828 265 aaKnown RBP9.28□□□□□ -0.92
VCAN-210ENST00000513960 BMP1P13497 986 aa9.28□□□□□ -0.92
VCAN-210ENST00000513960 HOXA9P31269 272 aa9.28□□□□□ -0.92
VCAN-210ENST00000513960 CLCN7P51798 805 aa9.28□□□□□ -0.92
VCAN-210ENST00000513960 CAV3P56539 151 aa9.28□□□□□ -0.92
VCAN-210ENST00000513960 HSPA14Q0VDF9 509 aa9.28□□□□□ -0.92
VCAN-210ENST00000513960 NOGQ13253 232 aa9.28□□□□□ -0.92
VCAN-210ENST00000513960 C1DQ13901 141 aaKnown RBP9.28□□□□□ -0.92
VCAN-210ENST00000513960 IRF3Q14653 427 aa9.28□□□□□ -0.92
VCAN-210ENST00000513960 SPDYE7PQ495Y7 208 aa9.28□□□□□ -0.92
VCAN-210ENST00000513960 LHX8Q68G74 356 aa9.28□□□□□ -0.92
VCAN-210ENST00000513960 DEFB128Q7Z7B8 93 aa9.28□□□□□ -0.92
VCAN-210ENST00000513960 ZNF557Q8N988 423 aaPredicted RBP9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms