RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 ILF2Q12905 390 aaKnown RBP14.78□□□□□ -0.04
CCDC88B-205ENST00000472524 SLBPQ14493 270 aaKnown RBP eCLIP14.78□□□□□ -0.04
CCDC88B-205ENST00000472524 EXT1Q16394 746 aa14.78□□□□□ -0.04
CCDC88B-205ENST00000472524 NIPAL1Q6NVV3 410 aa14.78□□□□□ -0.04
CCDC88B-205ENST00000472524 GPSM1Q86YR5 675 aa14.78□□□□□ -0.04
CCDC88B-205ENST00000472524 SUN3Q8TAQ9 357 aa14.78□□□□□ -0.04
CCDC88B-205ENST00000472524 FBXO25Q8TCJ0 367 aa14.78□□□□□ -0.04
CCDC88B-205ENST00000472524 CCT6BQ92526 530 aa14.78□□□□□ -0.04
CCDC88B-205ENST00000472524 EXT2Q93063 718 aa14.78□□□□□ -0.04
CCDC88B-205ENST00000472524 LPAR4Q99677 370 aa14.78□□□□□ -0.04
CCDC88B-205ENST00000472524 GPR22Q99680 433 aa14.78□□□□□ -0.04
CCDC88B-205ENST00000472524 TMEM79Q9BSE2 394 aa14.78□□□□□ -0.04
CCDC88B-205ENST00000472524 RNF32Q9H0A6 362 aa14.78□□□□□ -0.04
CCDC88B-205ENST00000472524 CREBBPQ92793 2442 aa14.77□□□□□ -0.04
CCDC88B-205ENST00000472524 GTF3C1Q12789 2109 aa14.77□□□□□ -0.04
CCDC88B-205ENST00000472524 PSMD12O00232 456 aaPredicted RBP14.77□□□□□ -0.05
CCDC88B-205ENST00000472524 TAPBPO15533 448 aa14.77□□□□□ -0.05
CCDC88B-205ENST00000472524 H2AFYO75367 372 aaKnown RBP14.77□□□□□ -0.05
CCDC88B-205ENST00000472524 FAM155BO75949 473 aa14.77□□□□□ -0.05
CCDC88B-205ENST00000472524 SERPINA6P08185 405 aa14.77□□□□□ -0.05
CCDC88B-205ENST00000472524 GSTA2P09210 222 aa14.77□□□□□ -0.05
CCDC88B-205ENST00000472524 C1GALT1C1LP0DN25 315 aa14.77□□□□□ -0.05
CCDC88B-205ENST00000472524 CD1DP15813 335 aa14.77□□□□□ -0.05
CCDC88B-205ENST00000472524 GMPRP36959 345 aa14.77□□□□□ -0.05
CCDC88B-205ENST00000472524 HSPA7P48741 367 aa14.77□□□□□ -0.05
CCDC88B-205ENST00000472524 SLMAPQ14BN4 828 aa14.77□□□□□ -0.05
CCDC88B-205ENST00000472524 OR4D1Q15615 310 aa14.77□□□□□ -0.05
CCDC88B-205ENST00000472524 TRADDQ15628 312 aa14.77□□□□□ -0.05
CCDC88B-205ENST00000472524 KBTBD12Q3ZCT8 623 aa14.77□□□□□ -0.05
CCDC88B-205ENST00000472524 SLCO4C1Q6ZQN7 724 aa14.77□□□□□ -0.05
CCDC88B-205ENST00000472524 CRLF3Q8IUI8 442 aa14.77□□□□□ -0.05
CCDC88B-205ENST00000472524 KLHDC8AQ8IYD2 350 aa14.77□□□□□ -0.05
CCDC88B-205ENST00000472524 CYP4X1Q8N118 509 aa14.77□□□□□ -0.05
CCDC88B-205ENST00000472524 BEST3Q8N1M1 668 aa14.77□□□□□ -0.05
CCDC88B-205ENST00000472524 PPM1NQ8N819 430 aa14.77□□□□□ -0.05
CCDC88B-205ENST00000472524 SNX31Q8N9S9 440 aa14.77□□□□□ -0.05
CCDC88B-205ENST00000472524 M1APQ8TC57 530 aa14.77□□□□□ -0.05
CCDC88B-205ENST00000472524 CREB3L4Q8TEY5 395 aa14.77□□□□□ -0.05
CCDC88B-205ENST00000472524 ZNF354BQ96LW1 612 aa14.77□□□□□ -0.05
CCDC88B-205ENST00000472524 PTCHD1Q96NR3 888 aa14.77□□□□□ -0.05
CCDC88B-205ENST00000472524 TAAR6Q96RI8 345 aa14.77□□□□□ -0.05
CCDC88B-205ENST00000472524 SLX1AQ9BQ83 275 aa14.77□□□□□ -0.05
CCDC88B-205ENST00000472524 AICDAQ9GZX7 198 aa14.77□□□□□ -0.05
CCDC88B-205ENST00000472524 PCNX1Q96RV3 2341 aa14.76□□□□□ -0.05
CCDC88B-205ENST00000472524 A0A0G2JN53 185 aa14.76□□□□□ -0.05
CCDC88B-205ENST00000472524 PRMT3O60678 531 aa14.76□□□□□ -0.05
CCDC88B-205ENST00000472524 PRAMEF2O60811 474 aa14.76□□□□□ -0.05
CCDC88B-205ENST00000472524 ZG16O60844 167 aa14.76□□□□□ -0.05
CCDC88B-205ENST00000472524 C1QAP02745 245 aa14.76□□□□□ -0.05
CCDC88B-205ENST00000472524 SMIM10L1P0DMW3 83 aa14.76□□□□□ -0.05
CCDC88B-205ENST00000472524 RNH1P13489 461 aaKnown RBP14.76□□□□□ -0.05
CCDC88B-205ENST00000472524 PRF1P14222 555 aa14.76□□□□□ -0.05
CCDC88B-205ENST00000472524 SPRP35270 261 aaPredicted RBP14.76□□□□□ -0.05
CCDC88B-205ENST00000472524 MAGEA4P43358 317 aa14.76□□□□□ -0.05
CCDC88B-205ENST00000472524 SLC26A5P58743 744 aa14.76□□□□□ -0.05
CCDC88B-205ENST00000472524 RAB10P61026 200 aa14.76□□□□□ -0.05
CCDC88B-205ENST00000472524 ATP6V0D1P61421 351 aa14.76□□□□□ -0.05
CCDC88B-205ENST00000472524 STXBP1P61764 594 aaKnown RBP14.76□□□□□ -0.05
CCDC88B-205ENST00000472524 BTG2P78543 158 aa14.76□□□□□ -0.05
CCDC88B-205ENST00000472524 CAV1Q03135 178 aa14.76□□□□□ -0.05
CCDC88B-205ENST00000472524 SRSF11Q05519 484 aaKnown RBP14.76□□□□□ -0.05
CCDC88B-205ENST00000472524 ZRSR2Q15696 482 aaKnown RBP14.76□□□□□ -0.05
CCDC88B-205ENST00000472524 INAQ16352 499 aa14.76□□□□□ -0.05
CCDC88B-205ENST00000472524 ACER2Q5QJU3 275 aa14.76□□□□□ -0.05
CCDC88B-205ENST00000472524 ZDHHC24Q6UX98 284 aa14.76□□□□□ -0.05
CCDC88B-205ENST00000472524 TMIGD1Q6UXZ0 262 aa14.76□□□□□ -0.05
CCDC88B-205ENST00000472524 SRRM1Q8IYB3 904 aaKnown RBP14.76□□□□□ -0.05
CCDC88B-205ENST00000472524 TCAIMQ8N3R3 496 aa14.76□□□□□ -0.05
CCDC88B-205ENST00000472524 FBF1Q8TES7 1133 aa14.76□□□□□ -0.05
CCDC88B-205ENST00000472524 ESAMQ96AP7 390 aa14.76□□□□□ -0.05
CCDC88B-205ENST00000472524 SMIM10Q96HG1 83 aa14.76□□□□□ -0.05
CCDC88B-205ENST00000472524 MMP25Q9NPA2 562 aa14.76□□□□□ -0.05
CCDC88B-205ENST00000472524 DNAJC11Q9NVH1 559 aa14.76□□□□□ -0.05
CCDC88B-205ENST00000472524 ANKRD10Q9NXR5 420 aa14.76□□□□□ -0.05
CCDC88B-205ENST00000472524 CD274Q9NZQ7 290 aa14.76□□□□□ -0.05
CCDC88B-205ENST00000472524 ABI3Q9P2A4 366 aa14.76□□□□□ -0.05
CCDC88B-205ENST00000472524 ARHGAP10A1A4S6 786 aa14.75□□□□□ -0.05
CCDC88B-205ENST00000472524 FAM227AF5H4B4 570 aa14.75□□□□□ -0.05
CCDC88B-205ENST00000472524 CLGNO14967 610 aa14.75□□□□□ -0.05
CCDC88B-205ENST00000472524 MAN1A2O60476 641 aa14.75□□□□□ -0.05
CCDC88B-205ENST00000472524 RASAL1O95294 804 aa14.75□□□□□ -0.05
CCDC88B-205ENST00000472524 S100BP04271 92 aaPredicted RBP14.75□□□□□ -0.05
CCDC88B-205ENST00000472524 MAOAP21397 527 aa14.75□□□□□ -0.05
CCDC88B-205ENST00000472524 TNFRSF8P28908 595 aa14.75□□□□□ -0.05
CCDC88B-205ENST00000472524 STX2P32856 288 aa14.75□□□□□ -0.05
CCDC88B-205ENST00000472524 KCNK10P57789 538 aa14.75□□□□□ -0.05
CCDC88B-205ENST00000472524 BTN3A2P78410 334 aa14.75□□□□□ -0.05
CCDC88B-205ENST00000472524 PMP22Q01453 160 aa14.75□□□□□ -0.05
CCDC88B-205ENST00000472524 SLC7A5Q01650 507 aa14.75□□□□□ -0.05
CCDC88B-205ENST00000472524 EFTUD2Q15029 972 aaKnown RBP eCLIP14.75□□□□□ -0.05
CCDC88B-205ENST00000472524 ZKSCAN8Q15776 578 aaPredicted RBP14.75□□□□□ -0.05
CCDC88B-205ENST00000472524 MEP1AQ16819 746 aa14.75□□□□□ -0.05
CCDC88B-205ENST00000472524 ZNF766Q5HY98 468 aa14.75□□□□□ -0.05
CCDC88B-205ENST00000472524 GRTP1Q5TC63 336 aa14.75□□□□□ -0.05
CCDC88B-205ENST00000472524 H3F3CQ6NXT2 135 aa14.75□□□□□ -0.05
CCDC88B-205ENST00000472524 QSOX2Q6ZRP7 698 aa14.75□□□□□ -0.05
CCDC88B-205ENST00000472524 RAPH1Q70E73 1250 aa14.75□□□□□ -0.05
CCDC88B-205ENST00000472524 CYS1Q717R9 158 aa14.75□□□□□ -0.05
CCDC88B-205ENST00000472524 CMC1Q7Z7K0 106 aa14.75□□□□□ -0.05
CCDC88B-205ENST00000472524 KRT78Q8N1N4 520 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms