RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 PRICKLE1Q96MT3 831 aaPredicted RBP7.1□□□□□ -1.27
VPS13A-202ENST00000357409 TSPAN10Q9H1Z9 355 aaPredicted RBP7.1□□□□□ -1.27
VPS13A-202ENST00000357409 MAPRE3Q9UPY8 281 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 MST1RQ04912 1400 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 A0A087WXM4 84 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 HIDE1A8MVS5 230 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 XPNPEP2O43895 674 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 GSTT1P30711 240 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 GPR4P46093 362 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 CRYZQ08257 329 aaKnown RBP7.1□□□□□ -1.27
VPS13A-202ENST00000357409 FGL1Q08830 312 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 SCAPQ12770 1279 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 PMS2P3Q13401 168 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 VASH2Q86V25 355 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 MYDGFQ969H8 173 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 FAM71F1Q96KD3 344 aaPredicted RBP7.1□□□□□ -1.27
VPS13A-202ENST00000357409 TSSK6Q9BXA6 273 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 CRTAC1Q9NQ79 661 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 DHCR7Q9UBM7 475 aaKnown RBP7.1□□□□□ -1.27
VPS13A-202ENST00000357409 DLGAP4Q9Y2H0 992 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 FRS3O43559 492 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 NUDT21O43809 227 aaKnown RBP7.1□□□□□ -1.27
VPS13A-202ENST00000357409 BRINP1O60477 761 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 CDRT1O95170 752 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 KAT7O95251 611 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 SOD2P04179 222 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 EEF1A2Q05639 463 aaKnown RBP7.1□□□□□ -1.27
VPS13A-202ENST00000357409 MEP1AQ16819 746 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 DMRTC1Q5HYR2 192 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 OR4D6Q8NGJ1 314 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 FOXJ1Q92949 421 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 RGMAQ96B86 450 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 RMI1Q9H9A7 625 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 TIGARQ9NQ88 270 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 DERAQ9Y315 318 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 HEMK1Q9Y5R4 338 aaPredicted RBP7.1□□□□□ -1.27
VPS13A-202ENST00000357409 NRXN1Q9ULB1 1477 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 EI24O14681 340 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 THRBP10828 461 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 TSHRP16473 764 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 CSNK2A2P19784 350 aaPredicted RBP7.1□□□□□ -1.27
VPS13A-202ENST00000357409 LIMK2P53671 638 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 NSDHLQ15738 373 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 WASHC2DQ5SRD0 308 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 GATAD2BQ8WXI9 593 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 IGSF21Q96ID5 467 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 TCF12Q99081 682 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 ZNF184Q99676 751 aaPredicted RBP7.1□□□□□ -1.27
VPS13A-202ENST00000357409 CMKLR1Q99788 373 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 ZNF700Q9H0M5 742 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 LRMDAQ9H2I8 198 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 PIGUQ9H490 435 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 LYARQ9NX58 379 aaKnown RBP7.1□□□□□ -1.27
VPS13A-202ENST00000357409 SARDHQ9UL12 918 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 GPR52Q9Y2T5 361 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 REREQ9P2R6 1566 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 ADCY10Q96PN6 1610 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 XKP51811 444 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 FOXC1Q12948 553 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 ALKBH6Q3KRA9 238 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 SERPINA12Q8IW75 414 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 OR8H3Q8N146 312 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 OR9A1PQ8NGU1 263 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 SLC6A7Q99884 636 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 ZNF69Q9UC07 566 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 LAMP5Q9UJQ1 280 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 SPEF1Q9Y4P9 236 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 BACE2Q9Y5Z0 518 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 ZMYM2Q9UBW7 1377 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 KDELR3O43731 214 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 SLC2A5P22732 501 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 GBX2P52951 348 aaPredicted RBP7.09□□□□□ -1.27
VPS13A-202ENST00000357409 GXYLT1Q4G148 440 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 LRRC69Q6ZNQ3 347 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 AMER2Q8N7J2 671 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 FRS2Q8WU20 508 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 TMEM121BQ9BXQ6 578 aaPredicted RBP7.09□□□□□ -1.27
VPS13A-202ENST00000357409 SLC6A16Q9GZN6 736 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 VSTM5A8MXK1 200 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 ADAM12O43184 909 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 OR2B3O76000 313 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 GKN3PP0CG01 181 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 ATP5A1P25705 553 aaKnown RBP7.09□□□□□ -1.27
VPS13A-202ENST00000357409 OXTRP30559 389 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 CRHR1P34998 444 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 IRF5Q13568 498 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 NDUFA5Q16718 116 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 TIGD4Q8IY51 512 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 LRRC20Q8TCA0 184 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 ATXN2LQ8WWM7 1075 aaKnown RBP7.09□□□□□ -1.27
VPS13A-202ENST00000357409 S100PBPQ96BU1 408 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 AGXT2Q9BYV1 514 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 RALYQ9UKM9 306 aaKnown RBP7.09□□□□□ -1.27
VPS13A-202ENST00000357409 KIF1BO60333 1816 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 OR6C70A6NIJ9 312 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 CD8B2A6NJW9 211 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 FZD9O00144 591 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 ONECUT3O60422 494 aaPredicted RBP7.09□□□□□ -1.27
VPS13A-202ENST00000357409 SORBS2O94875 1100 aaKnown RBP7.09□□□□□ -1.27
VPS13A-202ENST00000357409 CD8BP10966 210 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms