RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 MARK1Q9P0L2 795 aa18.63■□□□□ 0.57
USP48-201ENST00000308271 IKZF2Q9UKS7 526 aa18.63■□□□□ 0.57
USP48-201ENST00000308271 ABCG2Q9UNQ0 655 aa18.63■□□□□ 0.57
USP48-201ENST00000308271 ARL6IP5O75915 188 aa18.63■□□□□ 0.57
USP48-201ENST00000308271 TCEA2Q15560 299 aa18.63■□□□□ 0.57
USP48-201ENST00000308271 ATAT1Q5SQI0 421 aa18.63■□□□□ 0.57
USP48-201ENST00000308271 KHDRBS2Q5VWX1 349 aaKnown RBP18.63■□□□□ 0.57
USP48-201ENST00000308271 TICAM1Q8IUC6 712 aa18.63■□□□□ 0.57
USP48-201ENST00000308271 SNX29P2Q8IUI4 249 aa18.63■□□□□ 0.57
USP48-201ENST00000308271 SLC5A8Q8N695 610 aa18.63■□□□□ 0.57
USP48-201ENST00000308271 TBX5Q99593 518 aa18.63■□□□□ 0.57
USP48-201ENST00000308271 RRAGCQ9HB90 399 aa18.63■□□□□ 0.57
USP48-201ENST00000308271 FOLH1BQ9HBA9 442 aa18.63■□□□□ 0.57
USP48-201ENST00000308271 IMP3Q9NV31 184 aaKnown RBP18.63■□□□□ 0.57
USP48-201ENST00000308271 GMPR2Q9P2T1 348 aaKnown RBP18.63■□□□□ 0.57
USP48-201ENST00000308271 HCN1O60741 890 aa18.63■□□□□ 0.57
USP48-201ENST00000308271 RHCEP18577 417 aa18.63■□□□□ 0.57
USP48-201ENST00000308271 PRDX3P30048 256 aaKnown RBP18.63■□□□□ 0.57
USP48-201ENST00000308271 C22orf42Q6IC83 251 aa18.63■□□□□ 0.57
USP48-201ENST00000308271 NOXA1Q86UR1 476 aa18.63■□□□□ 0.57
USP48-201ENST00000308271 PTRH1Q86Y79 214 aaKnown RBP18.63■□□□□ 0.57
USP48-201ENST00000308271 POMGNT2Q8NAT1 580 aa18.63■□□□□ 0.57
USP48-201ENST00000308271 FBXO22Q8NEZ5 403 aa18.63■□□□□ 0.57
USP48-201ENST00000308271 OR10T2Q8NGX3 314 aa18.63■□□□□ 0.57
USP48-201ENST00000308271 NEIL3Q8TAT5 605 aa18.63■□□□□ 0.57
USP48-201ENST00000308271 DNASE1L2Q92874 299 aa18.63■□□□□ 0.57
USP48-201ENST00000308271 ABCD2Q9UBJ2 740 aa18.63■□□□□ 0.57
USP48-201ENST00000308271 DOT1LQ8TEK3 1739 aa18.63■□□□□ 0.57
USP48-201ENST00000308271 BMP4P12644 408 aa18.62■□□□□ 0.57
USP48-201ENST00000308271 MAGEA2P43356 314 aa18.62■□□□□ 0.57
USP48-201ENST00000308271 OLFML2AQ68BL7 652 aa18.62■□□□□ 0.57
USP48-201ENST00000308271 MTIF3Q9H2K0 278 aaKnown RBP18.62■□□□□ 0.57
USP48-201ENST00000308271 POLR1DQ9Y2S0 133 aa18.62■□□□□ 0.57
USP48-201ENST00000308271 COQ9O75208 318 aa18.62■□□□□ 0.57
USP48-201ENST00000308271 DNTTP04053 509 aa18.62■□□□□ 0.57
USP48-201ENST00000308271 LCN1P31025 176 aa18.62■□□□□ 0.57
USP48-201ENST00000308271 RPA4Q13156 261 aa18.62■□□□□ 0.57
USP48-201ENST00000308271 GPR149Q86SP6 731 aa18.62■□□□□ 0.57
USP48-201ENST00000308271 COMMD2Q86X83 199 aa18.62■□□□□ 0.57
USP48-201ENST00000308271 C15orf40Q8WUR7 153 aa18.62■□□□□ 0.57
USP48-201ENST00000308271 PIGKQ92643 395 aa18.62■□□□□ 0.57
USP48-201ENST00000308271 ZNF514Q96K75 400 aaPredicted RBP18.62■□□□□ 0.57
USP48-201ENST00000308271 TMEM106CQ9BVX2 250 aa18.62■□□□□ 0.57
USP48-201ENST00000308271 SRRDQ9UH36 339 aa18.62■□□□□ 0.57
USP48-201ENST00000308271 CHURC1-FNTBB4DL54 471 aa18.62■□□□□ 0.57
USP48-201ENST00000308271 M0R233 179 aa18.62■□□□□ 0.57
USP48-201ENST00000308271 JRKO75564 520 aa18.62■□□□□ 0.57
USP48-201ENST00000308271 CELP19835 753 aa18.62■□□□□ 0.57
USP48-201ENST00000308271 KELP23276 732 aa18.62■□□□□ 0.57
USP48-201ENST00000308271 RPL6Q02878 288 aaKnown RBP18.62■□□□□ 0.57
USP48-201ENST00000308271 UPP1Q16831 310 aa18.62■□□□□ 0.57
USP48-201ENST00000308271 FUZQ9BT04 418 aa18.62■□□□□ 0.57
USP48-201ENST00000308271 MLXQ9UH92 298 aa18.62■□□□□ 0.57
USP48-201ENST00000308271 TBC1D3BA6NDS4 549 aa18.62■□□□□ 0.57
USP48-201ENST00000308271 MTX2O75431 263 aa18.62■□□□□ 0.57
USP48-201ENST00000308271 RB1P06400 928 aa18.62■□□□□ 0.57
USP48-201ENST00000308271 GBX2P52951 348 aaPredicted RBP18.62■□□□□ 0.57
USP48-201ENST00000308271 ST3GAL3Q11203 375 aa18.62■□□□□ 0.57
USP48-201ENST00000308271 TBCEQ15813 527 aaPredicted RBP18.62■□□□□ 0.57
USP48-201ENST00000308271 ZNF792Q3KQV3 632 aa18.62■□□□□ 0.57
USP48-201ENST00000308271 EIPR1Q53HC9 387 aa18.62■□□□□ 0.57
USP48-201ENST00000308271 PLEKHS1Q5SXH7 462 aa18.62■□□□□ 0.57
USP48-201ENST00000308271 HLA-DQA1Q5Y7H0 255 aa18.62■□□□□ 0.57
USP48-201ENST00000308271 C1orf216Q8TAB5 229 aa18.62■□□□□ 0.57
USP48-201ENST00000308271 OLIG1Q8TAK6 271 aa18.62■□□□□ 0.57
USP48-201ENST00000308271 NDC1Q9BTX1 674 aa18.62■□□□□ 0.57
USP48-201ENST00000308271 B3GNT8Q7Z7M8 397 aa18.61■□□□□ 0.57
USP48-201ENST00000308271 ARHGAP12Q8IWW6 846 aa18.61■□□□□ 0.57
USP48-201ENST00000308271 NR4A3Q92570 626 aa18.61■□□□□ 0.57
USP48-201ENST00000308271 DUS3LQ96G46 650 aaKnown RBP18.61■□□□□ 0.57
USP48-201ENST00000308271 NUMBLQ9Y6R0 609 aa18.61■□□□□ 0.57
USP48-201ENST00000308271 DUXAA6NLW8 204 aa18.61■□□□□ 0.57
USP48-201ENST00000308271 JUPP14923 745 aa18.61■□□□□ 0.57
USP48-201ENST00000308271 SF1Q15637 639 aaKnown RBP18.61■□□□□ 0.57
USP48-201ENST00000308271 DCAF4L2Q8NA75 395 aa18.61■□□□□ 0.57
USP48-201ENST00000308271 RNF121Q9H920 327 aa18.61■□□□□ 0.57
USP48-201ENST00000308271 THG1LQ9NWX6 298 aaKnown RBP18.61■□□□□ 0.57
USP48-201ENST00000308271 SLC27A6Q9Y2P4 619 aa18.61■□□□□ 0.57
USP48-201ENST00000308271 PCDHGB7Q9Y5F8 929 aa18.61■□□□□ 0.57
USP48-201ENST00000308271 FKBP7Q9Y680 259 aa18.61■□□□□ 0.57
USP48-201ENST00000308271 MAST2Q6P0Q8 1798 aa18.61■□□□□ 0.57
USP48-201ENST00000308271 DDX60Q8IY21 1712 aaKnown RBP18.61■□□□□ 0.57
USP48-201ENST00000308271 LDB2O43679 373 aa18.61■□□□□ 0.57
USP48-201ENST00000308271 AVPR1BP47901 424 aa18.61■□□□□ 0.57
USP48-201ENST00000308271 NCBP2P52298 156 aaKnown RBP eCLIP18.61■□□□□ 0.572e-8■■■□□ 17.4
USP48-201ENST00000308271 VEZF1Q14119 521 aa18.61■□□□□ 0.57
USP48-201ENST00000308271 CARD16Q5EG05 197 aa18.61■□□□□ 0.57
USP48-201ENST00000308271 GALNT10Q86SR1 603 aa18.61■□□□□ 0.57
USP48-201ENST00000308271 FUNDC1Q8IVP5 155 aa18.61■□□□□ 0.57
USP48-201ENST00000308271 CCM2Q9BSQ5 444 aa18.61■□□□□ 0.57
USP48-201ENST00000308271 BRINP2Q9C0B6 783 aa18.61■□□□□ 0.57
USP48-201ENST00000308271 SLAMF8Q9P0V8 285 aa18.61■□□□□ 0.57
USP48-201ENST00000308271 TRAV6A0A075B6T7 132 aa18.61■□□□□ 0.57
USP48-201ENST00000308271 ZNF879B4DU55 563 aa18.61■□□□□ 0.57
USP48-201ENST00000308271 KDM4BO94953 1096 aa18.61■□□□□ 0.57
USP48-201ENST00000308271 GABARAPO95166 117 aa18.61■□□□□ 0.57
USP48-201ENST00000308271 ARFIP1P53367 373 aa18.61■□□□□ 0.57
USP48-201ENST00000308271 EEF1AKMT2Q5JPI9 291 aaKnown RBP18.61■□□□□ 0.57
USP48-201ENST00000308271 FAM46CQ5VWP2 391 aa18.61■□□□□ 0.57
USP48-201ENST00000308271 PIAS4Q8N2W9 510 aaPredicted RBP18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms