RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 ZFP41Q8N8Y5 198 aa12.97□□□□□ -0.33
SKA3-201ENST00000298260 CREB3L4Q8TEY5 395 aa12.97□□□□□ -0.33
SKA3-201ENST00000298260 RTP3Q9BQQ7 232 aa12.97□□□□□ -0.33
SKA3-201ENST00000298260 WACQ9BTA9 647 aa12.97□□□□□ -0.33
SKA3-201ENST00000298260 B3GNT2Q9NY97 397 aa12.97□□□□□ -0.33
SKA3-201ENST00000298260 MGAT4AQ9UM21 535 aa12.97□□□□□ -0.33
SKA3-201ENST00000298260 PPP2R3BQ9Y5P8 575 aa12.97□□□□□ -0.33
SKA3-201ENST00000298260 GBF1Q92538 1859 aa12.96□□□□□ -0.33
SKA3-201ENST00000298260 ZNF865P0CJ78 1059 aaPredicted RBP12.96□□□□□ -0.33
SKA3-201ENST00000298260 SLC2A2P11168 524 aaPredicted RBP12.96□□□□□ -0.33
SKA3-201ENST00000298260 ACADMP11310 421 aa12.96□□□□□ -0.33
SKA3-201ENST00000298260 CSNK2BP67870 215 aa12.96□□□□□ -0.33
SKA3-201ENST00000298260 MRPL28Q13084 256 aaKnown RBP12.96□□□□□ -0.33
SKA3-201ENST00000298260 FCN2Q15485 313 aa12.96□□□□□ -0.33
SKA3-201ENST00000298260 ZNF284Q2VY69 593 aa12.96□□□□□ -0.33
SKA3-201ENST00000298260 TIMM50Q3ZCQ8 353 aa12.96□□□□□ -0.33
SKA3-201ENST00000298260 ATXN7L2Q5T6C5 722 aaPredicted RBP12.96□□□□□ -0.33
SKA3-201ENST00000298260 TEX261Q6UWH6 196 aa12.96□□□□□ -0.33
SKA3-201ENST00000298260 LIPIQ6XZB0 460 aa12.96□□□□□ -0.33
SKA3-201ENST00000298260 Q8N402 240 aa12.96□□□□□ -0.33
SKA3-201ENST00000298260 NELL1Q92832 810 aa12.96□□□□□ -0.33
SKA3-201ENST00000298260 AIFM2Q9BRQ8 373 aa12.96□□□□□ -0.33
SKA3-201ENST00000298260 POLR2J2Q9GZM3 115 aaKnown RBP12.96□□□□□ -0.33
SKA3-201ENST00000298260 RPS6KA6Q9UK32 745 aa12.96□□□□□ -0.33
SKA3-201ENST00000298260 VPS9D1Q9Y2B5 631 aa12.96□□□□□ -0.33
SKA3-201ENST00000298260 U3KQ87 197 aa12.96□□□□□ -0.33
SKA3-201ENST00000298260 PAPPA2Q9BXP8 1791 aa12.96□□□□□ -0.33
SKA3-201ENST00000298260 ISM1B1AKI9 464 aa12.96□□□□□ -0.34
SKA3-201ENST00000298260 PCDH7O60245 1069 aa12.96□□□□□ -0.34
SKA3-201ENST00000298260 GCM2O75603 506 aaPredicted RBP12.96□□□□□ -0.34
SKA3-201ENST00000298260 IL1RNP18510 177 aa12.96□□□□□ -0.34
SKA3-201ENST00000298260 RRAS2P62070 204 aaPredicted RBP12.96□□□□□ -0.34
SKA3-201ENST00000298260 EIF4EBP2Q13542 120 aaPredicted RBP12.96□□□□□ -0.34
SKA3-201ENST00000298260 ARHGEF7Q14155 803 aa12.96□□□□□ -0.34
SKA3-201ENST00000298260 UGT8Q16880 541 aa12.96□□□□□ -0.34
SKA3-201ENST00000298260 PLAG1Q6DJT9 500 aa12.96□□□□□ -0.34
SKA3-201ENST00000298260 ST8SIA2Q92186 375 aa12.96□□□□□ -0.34
SKA3-201ENST00000298260 CRELD1Q96HD1 420 aa12.96□□□□□ -0.34
SKA3-201ENST00000298260 TM9SF2Q99805 663 aa12.96□□□□□ -0.34
SKA3-201ENST00000298260 TMEM121BQ9BXQ6 578 aaPredicted RBP12.96□□□□□ -0.34
SKA3-201ENST00000298260 NIPAL2Q9H841 368 aa12.96□□□□□ -0.34
SKA3-201ENST00000298260 PRM3Q9NNZ6 103 aa12.96□□□□□ -0.34
SKA3-201ENST00000298260 NLE1Q9NVX2 485 aaPredicted RBP12.96□□□□□ -0.34
SKA3-201ENST00000298260 PCDHGB3Q9Y5G1 929 aa12.96□□□□□ -0.34
SKA3-201ENST00000298260 FADS2P1A8MWK0 482 aa12.95□□□□□ -0.34
SKA3-201ENST00000298260 SUV39H1O43463 412 aa12.95□□□□□ -0.34
SKA3-201ENST00000298260 HPGDSO60760 199 aa12.95□□□□□ -0.34
SKA3-201ENST00000298260 CCNB2O95067 398 aa12.95□□□□□ -0.34
SKA3-201ENST00000298260 FGF1P05230 155 aa12.95□□□□□ -0.34
SKA3-201ENST00000298260 PSMA1P25786 263 aaKnown RBP12.95□□□□□ -0.34
SKA3-201ENST00000298260 MAB21L1Q13394 359 aa12.95□□□□□ -0.34
SKA3-201ENST00000298260 SPHARQ15513 63 aa12.95□□□□□ -0.34
SKA3-201ENST00000298260 LCN1P1Q5VSP4 162 aa12.95□□□□□ -0.34
SKA3-201ENST00000298260 XKRXQ6PP77 449 aa12.95□□□□□ -0.34
SKA3-201ENST00000298260 KRT73Q86Y46 540 aa12.95□□□□□ -0.34
SKA3-201ENST00000298260 SCN4BQ8IWT1 228 aa12.95□□□□□ -0.34
SKA3-201ENST00000298260 TMEM145Q8NBT3 493 aa12.95□□□□□ -0.34
SKA3-201ENST00000298260 C19orf18Q8NEA5 215 aa12.95□□□□□ -0.34
SKA3-201ENST00000298260 FBXW5Q969U6 566 aa12.95□□□□□ -0.34
SKA3-201ENST00000298260 PPP1R2P1Q96PQ5 205 aa12.95□□□□□ -0.34
SKA3-201ENST00000298260 MCCC2Q9HCC0 563 aa12.95□□□□□ -0.34
SKA3-201ENST00000298260 RIMKLBQ9ULI2 386 aa12.95□□□□□ -0.34
SKA3-201ENST00000298260 AP3M1Q9Y2T2 418 aa12.95□□□□□ -0.34
SKA3-201ENST00000298260 ANKRD36A6QL64 1941 aa12.95□□□□□ -0.34
SKA3-201ENST00000298260 ZNF670-ZNF695F2Z2N8 137 aa12.95□□□□□ -0.34
SKA3-201ENST00000298260 PRAMEF12O95522 483 aa12.95□□□□□ -0.34
SKA3-201ENST00000298260 PRLP01236 227 aa12.95□□□□□ -0.34
SKA3-201ENST00000298260 CCT3P49368 545 aaKnown RBP12.95□□□□□ -0.34
SKA3-201ENST00000298260 PRIM2P49643 509 aa12.95□□□□□ -0.34
SKA3-201ENST00000298260 GPR15P49685 360 aa12.95□□□□□ -0.34
SKA3-201ENST00000298260 CTBP2P56545 445 aa12.95□□□□□ -0.34
SKA3-201ENST00000298260 BNC1Q01954 994 aa12.95□□□□□ -0.34
SKA3-201ENST00000298260 RGS1Q08116 209 aa12.95□□□□□ -0.34
SKA3-201ENST00000298260 INSL4Q14641 139 aa12.95□□□□□ -0.34
SKA3-201ENST00000298260 SUZ12Q15022 739 aaKnown RBP12.95□□□□□ -0.34
SKA3-201ENST00000298260 PCBP2Q15366 365 aaKnown RBP eCLIP12.95□□□□□ -0.34
SKA3-201ENST00000298260 TIGD5Q53EQ6 642 aa12.95□□□□□ -0.34
SKA3-201ENST00000298260 MS4A13Q5J8X5 152 aa12.95□□□□□ -0.34
SKA3-201ENST00000298260 TRIQKQ629K1 86 aa12.95□□□□□ -0.34
SKA3-201ENST00000298260 FBXL22Q6P050 247 aa12.95□□□□□ -0.34
SKA3-201ENST00000298260 STK40Q8N2I9 435 aa12.95□□□□□ -0.34
SKA3-201ENST00000298260 SELENOMQ8WWX9 145 aa12.95□□□□□ -0.34
SKA3-201ENST00000298260 AKAP1Q92667 903 aaKnown RBP eCLIP12.95□□□□□ -0.34
SKA3-201ENST00000298260 TBC1D20Q96BZ9 403 aa12.95□□□□□ -0.34
SKA3-201ENST00000298260 GTPBP2Q9BX10 602 aaKnown RBP12.95□□□□□ -0.34
SKA3-201ENST00000298260 CIPCQ9C0C6 399 aa12.95□□□□□ -0.34
SKA3-201ENST00000298260 POLR1EQ9GZS1 481 aaKnown RBP12.95□□□□□ -0.34
SKA3-201ENST00000298260 NUDT4Q9NZJ9 180 aa12.95□□□□□ -0.34
SKA3-201ENST00000298260 ZNF222Q9UK12 451 aa12.95□□□□□ -0.34
SKA3-201ENST00000298260 TMCC3Q9ULS5 477 aa12.95□□□□□ -0.34
SKA3-201ENST00000298260 KCNE2Q9Y6J6 123 aa12.95□□□□□ -0.34
SKA3-201ENST00000298260 C2orf78A6NCI8 922 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 ADAMDEC1O15204 470 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 LYRM1O43325 122 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 CNMDO75829 334 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 CFDP00746 253 aaPredicted RBP12.94□□□□□ -0.34
SKA3-201ENST00000298260 HRGP04196 525 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 SCG5P05408 212 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 DARSP14868 501 aaKnown RBP12.94□□□□□ -0.34
SKA3-201ENST00000298260 HOXB8P17481 243 aaPredicted RBP12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms