RNA–Protein interactions for RNA: ENST00000254667.7

PTPRE-201, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRE, Length 5,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-201ENST00000254667 RUNX3Q13761 415 aa18.3■□□□□ 0.52
PTPRE-201ENST00000254667 SMU1Q2TAY7 513 aa18.3■□□□□ 0.52
PTPRE-201ENST00000254667 RPS27LQ71UM5 84 aaKnown RBP18.3■□□□□ 0.52
PTPRE-201ENST00000254667 THRSPQ92748 146 aa18.3■□□□□ 0.52
PTPRE-201ENST00000254667 OSTF1Q92882 214 aa18.3■□□□□ 0.52
PTPRE-201ENST00000254667 TBX5Q99593 518 aa18.3■□□□□ 0.52
PTPRE-201ENST00000254667 BHLHE41Q9C0J9 482 aaPredicted RBP18.3■□□□□ 0.52
PTPRE-201ENST00000254667 HAPLN2Q9GZV7 340 aa18.3■□□□□ 0.52
PTPRE-201ENST00000254667 SUSD2Q9UGT4 822 aa18.3■□□□□ 0.52
PTPRE-201ENST00000254667 PTBP2Q9UKA9 531 aaKnown RBP18.3■□□□□ 0.52
PTPRE-201ENST00000254667 CYP8B1Q9UNU6 501 aa18.3■□□□□ 0.52
PTPRE-201ENST00000254667 A0A1W2PQU0 124 aa18.3■□□□□ 0.52
PTPRE-201ENST00000254667 ACOX3O15254 700 aa18.3■□□□□ 0.52
PTPRE-201ENST00000254667 ASGR2P07307 311 aa18.3■□□□□ 0.52
PTPRE-201ENST00000254667 SLC35E2BP0CK96 405 aa18.3■□□□□ 0.52
PTPRE-201ENST00000254667 C5AR1P21730 350 aa18.3■□□□□ 0.52
PTPRE-201ENST00000254667 POU6F2P78424 691 aaPredicted RBP18.3■□□□□ 0.52
PTPRE-201ENST00000254667 TXNL4AP83876 142 aaKnown RBP18.3■□□□□ 0.52
PTPRE-201ENST00000254667 SWI5Q1ZZU3 235 aa18.3■□□□□ 0.52
PTPRE-201ENST00000254667 TCEAL8Q8IYN2 117 aa18.3■□□□□ 0.52
PTPRE-201ENST00000254667 AMBNQ9NP70 447 aa18.3■□□□□ 0.52
PTPRE-201ENST00000254667 LRRC42Q9Y546 428 aa18.3■□□□□ 0.52
PTPRE-201ENST00000254667 TGM5O43548 720 aa18.3■□□□□ 0.52
PTPRE-201ENST00000254667 RAB36O95755 333 aa18.3■□□□□ 0.52
PTPRE-201ENST00000254667 GBAP04062 536 aa18.3■□□□□ 0.52
PTPRE-201ENST00000254667 CHRM1P11229 460 aaPredicted RBP18.3■□□□□ 0.52
PTPRE-201ENST00000254667 HSD11B1P28845 292 aa18.3■□□□□ 0.52
PTPRE-201ENST00000254667 CLIP4Q8N3C7 705 aa18.3■□□□□ 0.52
PTPRE-201ENST00000254667 CRYBG1Q9Y4K1 1723 aa18.3■□□□□ 0.52
PTPRE-201ENST00000254667 DOT1LQ8TEK3 1739 aa18.3■□□□□ 0.52
PTPRE-201ENST00000254667 SDHDO14521 159 aa18.3■□□□□ 0.52
PTPRE-201ENST00000254667 CDKN1CP49918 316 aaPredicted RBP18.3■□□□□ 0.52
PTPRE-201ENST00000254667 MTTPP55157 894 aa18.3■□□□□ 0.52
PTPRE-201ENST00000254667 OGFOD2Q6N063 350 aa18.3■□□□□ 0.52
PTPRE-201ENST00000254667 Q8N9G6 341 aaPredicted RBP18.3■□□□□ 0.52
PTPRE-201ENST00000254667 PRTFDC1Q9NRG1 225 aa18.3■□□□□ 0.52
PTPRE-201ENST00000254667 A0A075B6Q4 140 aa18.29■□□□□ 0.52
PTPRE-201ENST00000254667 RAB15P59190 212 aa18.29■□□□□ 0.52
PTPRE-201ENST00000254667 KIAA1614Q5VZ46 1190 aa18.29■□□□□ 0.52
PTPRE-201ENST00000254667 LINGO2Q7L985 606 aa18.29■□□□□ 0.52
PTPRE-201ENST00000254667 P4HA3Q7Z4N8 544 aa18.29■□□□□ 0.52
PTPRE-201ENST00000254667 ZBED3Q96IU2 234 aaPredicted RBP18.29■□□□□ 0.52
PTPRE-201ENST00000254667 G6PC3Q9BUM1 346 aa18.29■□□□□ 0.52
PTPRE-201ENST00000254667 FBRSL1Q9HCM7 1045 aaKnown RBP18.29■□□□□ 0.52
PTPRE-201ENST00000254667 TTC34A8MYJ7 566 aa18.29■□□□□ 0.52
PTPRE-201ENST00000254667 ENTPD6O75354 484 aa18.29■□□□□ 0.52
PTPRE-201ENST00000254667 ZNF41P51814 821 aaPredicted RBP18.29■□□□□ 0.52
PTPRE-201ENST00000254667 CD47Q08722 323 aa18.29■□□□□ 0.52
PTPRE-201ENST00000254667 PCBP2Q15366 365 aaKnown RBP eCLIP18.29■□□□□ 0.52
PTPRE-201ENST00000254667 COMMD3Q9UBI1 195 aa18.29■□□□□ 0.52
PTPRE-201ENST00000254667 UNC50Q53HI1 259 aa18.29■□□□□ 0.52
PTPRE-201ENST00000254667 TPRG1LQ5T0D9 272 aa18.29■□□□□ 0.52
PTPRE-201ENST00000254667 B3GNT9Q6UX72 402 aa18.29■□□□□ 0.52
PTPRE-201ENST00000254667 C12orf76Q8N812 135 aaPredicted RBP18.29■□□□□ 0.52
PTPRE-201ENST00000254667 GNPDA2Q8TDQ7 276 aa18.29■□□□□ 0.52
PTPRE-201ENST00000254667 SP140LQ9H930 580 aa18.29■□□□□ 0.52
PTPRE-201ENST00000254667 GPRC5BQ9NZH0 403 aa18.29■□□□□ 0.52
PTPRE-201ENST00000254667 LIPT1Q9Y234 373 aa18.29■□□□□ 0.52
PTPRE-201ENST00000254667 PCDHGB2Q9Y5G2 931 aa18.29■□□□□ 0.52
PTPRE-201ENST00000254667 SEMA3DO95025 777 aa18.29■□□□□ 0.52
PTPRE-201ENST00000254667 TIMP1P01033 207 aa18.29■□□□□ 0.52
PTPRE-201ENST00000254667 HLA-DPB1P04440 258 aa18.29■□□□□ 0.52
PTPRE-201ENST00000254667 EDNRAP25101 427 aa18.29■□□□□ 0.52
PTPRE-201ENST00000254667 NIPAL4Q0D2K0 466 aa18.29■□□□□ 0.52
PTPRE-201ENST00000254667 SLITRK4Q8IW52 837 aa18.29■□□□□ 0.52
PTPRE-201ENST00000254667 TSSK6Q9BXA6 273 aa18.29■□□□□ 0.52
PTPRE-201ENST00000254667 STRADBQ9C0K7 418 aa18.29■□□□□ 0.52
PTPRE-201ENST00000254667 CENPMQ9NSP4 180 aa18.29■□□□□ 0.52
PTPRE-201ENST00000254667 CDH11P55287 796 aa18.28■□□□□ 0.52
PTPRE-201ENST00000254667 TAS2R43P59537 309 aa18.28■□□□□ 0.52
PTPRE-201ENST00000254667 MC1RQ01726 317 aa18.28■□□□□ 0.52
PTPRE-201ENST00000254667 CWF19L1Q69YN2 538 aaKnown RBP18.28■□□□□ 0.52
PTPRE-201ENST00000254667 PSAPL1Q6NUJ1 521 aa18.28■□□□□ 0.52
PTPRE-201ENST00000254667 CDCA3Q99618 268 aaPredicted RBP18.28■□□□□ 0.52
PTPRE-201ENST00000254667 RPF2Q9H7B2 306 aaKnown RBP18.28■□□□□ 0.52
PTPRE-201ENST00000254667 A0A1W2PRQ8 180 aa18.28■□□□□ 0.52
PTPRE-201ENST00000254667 PDYNP01213 254 aa18.28■□□□□ 0.52
PTPRE-201ENST00000254667 DBIP07108 87 aaKnown RBP18.28■□□□□ 0.52
PTPRE-201ENST00000254667 HEXBP07686 556 aa18.28■□□□□ 0.52
PTPRE-201ENST00000254667 NTSR1P30989 418 aa18.28■□□□□ 0.52
PTPRE-201ENST00000254667 TMEM35AQ53FP2 167 aa18.28■□□□□ 0.52
PTPRE-201ENST00000254667 UNC5DQ6UXZ4 953 aa18.28■□□□□ 0.52
PTPRE-201ENST00000254667 SDR16C5Q8N3Y7 309 aa18.28■□□□□ 0.52
PTPRE-201ENST00000254667 C1orf226A1L170 272 aa18.28■□□□□ 0.52
PTPRE-201ENST00000254667 DIO3P55073 304 aa18.28■□□□□ 0.52
PTPRE-201ENST00000254667 TUBA3CQ13748 450 aa18.28■□□□□ 0.52
PTPRE-201ENST00000254667 ZNF267Q14586 743 aaPredicted RBP18.28■□□□□ 0.52
PTPRE-201ENST00000254667 NANOGP8Q6NSW7 305 aa18.28■□□□□ 0.52
PTPRE-201ENST00000254667 MINDY2Q8NBR6 621 aa18.28■□□□□ 0.52
PTPRE-201ENST00000254667 ACOT12Q8WYK0 555 aa18.28■□□□□ 0.52
PTPRE-201ENST00000254667 CPNE2Q96FN4 548 aaPredicted RBP18.28■□□□□ 0.52
PTPRE-201ENST00000254667 NANOGQ9H9S0 305 aa18.28■□□□□ 0.52
PTPRE-201ENST00000254667 RPS15AP62244 130 aaKnown RBP18.28■□□□□ 0.52
PTPRE-201ENST00000254667 CBLBQ13191 982 aa18.28■□□□□ 0.52
PTPRE-201ENST00000254667 SLC36A4Q6YBV0 504 aa18.28■□□□□ 0.52
PTPRE-201ENST00000254667 GALNTL5Q7Z4T8 443 aa18.28■□□□□ 0.52
PTPRE-201ENST00000254667 OR4K1Q8NGD4 311 aa18.28■□□□□ 0.52
PTPRE-201ENST00000254667 ZFP3Q96NJ6 502 aa18.28■□□□□ 0.52
PTPRE-201ENST00000254667 TMEM189-UBE2V1I3L0A0 370 aa18.27■□□□□ 0.52
PTPRE-201ENST00000254667 CD9P21926 228 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms