RNA–Protein interactions for RNA: ENST00000005226.11

USH1C-201, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS P3 TSL 5 BASIC

Gene USH1C, Length 2,700 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-201ENST00000005226 BDKRB1P46663 353 aa13.47□□□□□ -0.25
USH1C-201ENST00000005226 MVDP53602 400 aa13.47□□□□□ -0.25
USH1C-201ENST00000005226 LRRC26Q2I0M4 334 aa13.47□□□□□ -0.25
USH1C-201ENST00000005226 AGAP6Q5VW22 663 aa13.47□□□□□ -0.25
USH1C-201ENST00000005226 KIAA1841Q6NSI8 718 aa13.47□□□□□ -0.25
USH1C-201ENST00000005226 CPA6Q8N4T0 437 aa13.47□□□□□ -0.25
USH1C-201ENST00000005226 AGAP4Q96P64 663 aa13.47□□□□□ -0.25
USH1C-201ENST00000005226 NDEL1Q9GZM8 345 aa13.47□□□□□ -0.25
USH1C-201ENST00000005226 C11orf16Q9NQ32 467 aa13.47□□□□□ -0.25
USH1C-201ENST00000005226 CCDC88CQ9P219 2028 aa13.47□□□□□ -0.25
USH1C-201ENST00000005226 SMIM30A4D0T7 59 aa13.47□□□□□ -0.25
USH1C-201ENST00000005226 GFYI3L273 518 aa13.47□□□□□ -0.25
USH1C-201ENST00000005226 C1SP09871 688 aa13.47□□□□□ -0.25
USH1C-201ENST00000005226 ATP1B2P14415 290 aaPredicted RBP13.47□□□□□ -0.25
USH1C-201ENST00000005226 LIMK1P53667 647 aa13.47□□□□□ -0.25
USH1C-201ENST00000005226 RPS13P62277 151 aaKnown RBP13.47□□□□□ -0.25
USH1C-201ENST00000005226 GPNMBQ14956 572 aa13.47□□□□□ -0.25
USH1C-201ENST00000005226 PRSS53Q2L4Q9 553 aa13.47□□□□□ -0.25
USH1C-201ENST00000005226 IFI44LQ53G44 452 aa13.47□□□□□ -0.25
USH1C-201ENST00000005226 ATAD3CQ5T2N8 411 aa13.47□□□□□ -0.25
USH1C-201ENST00000005226 TPRG1Q6ZUI0 275 aa13.47□□□□□ -0.25
USH1C-201ENST00000005226 VASH1Q7L8A9 365 aaPredicted RBP13.47□□□□□ -0.25
USH1C-201ENST00000005226 CCDC190Q86UF4 302 aa13.47□□□□□ -0.25
USH1C-201ENST00000005226 ATCAYQ86WG3 371 aa13.47□□□□□ -0.25
USH1C-201ENST00000005226 MMAAQ8IVH4 418 aaKnown RBP13.47□□□□□ -0.25
USH1C-201ENST00000005226 MMP21Q8N119 569 aa13.47□□□□□ -0.25
USH1C-201ENST00000005226 CBARPQ8N350 705 aaPredicted RBP13.47□□□□□ -0.25
USH1C-201ENST00000005226 AQP11Q8NBQ7 271 aa13.47□□□□□ -0.25
USH1C-201ENST00000005226 HUS1BQ8NHY5 278 aa13.47□□□□□ -0.25
USH1C-201ENST00000005226 AUTS2Q8WXX7 1259 aa13.47□□□□□ -0.25
USH1C-201ENST00000005226 FCRL1Q96LA6 429 aa13.47□□□□□ -0.25
USH1C-201ENST00000005226 BARHL1Q9BZE3 327 aa13.47□□□□□ -0.25
USH1C-201ENST00000005226 BRD9Q9H8M2 597 aa13.47□□□□□ -0.25
USH1C-201ENST00000005226 SPATA6Q9NWH7 488 aaPredicted RBP13.47□□□□□ -0.25
USH1C-201ENST00000005226 CCDC59Q9P031 241 aaKnown RBP13.47□□□□□ -0.25
USH1C-201ENST00000005226 RAB23Q9ULC3 237 aa13.47□□□□□ -0.25
USH1C-201ENST00000005226 ADAMDEC1O15204 470 aa13.46□□□□□ -0.25
USH1C-201ENST00000005226 IDH3BO43837 385 aa13.46□□□□□ -0.25
USH1C-201ENST00000005226 SOX14O95416 240 aa13.46□□□□□ -0.25
USH1C-201ENST00000005226 IGSF6O95976 241 aa13.46□□□□□ -0.25
USH1C-201ENST00000005226 APOA1P02647 267 aa13.46□□□□□ -0.25
USH1C-201ENST00000005226 PCGF2P35227 344 aa13.46□□□□□ -0.25
USH1C-201ENST00000005226 SLC15A1P46059 708 aa13.46□□□□□ -0.25
USH1C-201ENST00000005226 PRIM2P49643 509 aa13.46□□□□□ -0.25
USH1C-201ENST00000005226 HNMTP50135 292 aa13.46□□□□□ -0.25
USH1C-201ENST00000005226 MXD1Q05195 221 aa13.46□□□□□ -0.25
USH1C-201ENST00000005226 SCARB2Q14108 478 aa13.46□□□□□ -0.25
USH1C-201ENST00000005226 PTCHD4Q6ZW05 846 aa13.46□□□□□ -0.25
USH1C-201ENST00000005226 DNAJB7Q7Z6W7 309 aaPredicted RBP13.46□□□□□ -0.25
USH1C-201ENST00000005226 UBE2J2Q8N2K1 259 aa13.46□□□□□ -0.25
USH1C-201ENST00000005226 OR2AP1Q8NGE2 309 aa13.46□□□□□ -0.25
USH1C-201ENST00000005226 GPR151Q8TDV0 419 aa13.46□□□□□ -0.25
USH1C-201ENST00000005226 TP53INP1Q96A56 240 aa13.46□□□□□ -0.25
USH1C-201ENST00000005226 SCRN2Q96FV2 425 aa13.46□□□□□ -0.25
USH1C-201ENST00000005226 TRMT61AQ96FX7 289 aaKnown RBP13.46□□□□□ -0.25
USH1C-201ENST00000005226 RAD9AQ99638 391 aa13.46□□□□□ -0.25
USH1C-201ENST00000005226 SLC35A5Q9BS91 424 aa13.46□□□□□ -0.25
USH1C-201ENST00000005226 ZNF334Q9HCZ1 680 aaPredicted RBP13.46□□□□□ -0.25
USH1C-201ENST00000005226 TIGARQ9NQ88 270 aa13.46□□□□□ -0.25
USH1C-201ENST00000005226 SNTG1Q9NSN8 517 aa13.46□□□□□ -0.25
USH1C-201ENST00000005226 ACER3Q9NUN7 267 aa13.46□□□□□ -0.25
USH1C-201ENST00000005226 B4GALT6Q9UBX8 382 aa13.46□□□□□ -0.25
USH1C-201ENST00000005226 POFUT2Q9Y2G5 429 aa13.46□□□□□ -0.25
USH1C-201ENST00000005226 MEF2AQ02078 507 aaPredicted RBP13.46□□□□□ -0.26
USH1C-201ENST00000005226 CSTF3Q12996 717 aaKnown RBP13.46□□□□□ -0.26
USH1C-201ENST00000005226 BAK1Q16611 211 aa13.46□□□□□ -0.26
USH1C-201ENST00000005226 MLIPQ5VWP3 458 aa13.46□□□□□ -0.26
USH1C-201ENST00000005226 SLC8B1Q6J4K2 584 aa13.46□□□□□ -0.26
USH1C-201ENST00000005226 ZNF783Q6ZMS7 281 aa13.46□□□□□ -0.26
USH1C-201ENST00000005226 RNF130Q86XS8 419 aa13.46□□□□□ -0.26
USH1C-201ENST00000005226 CHST14Q8NCH0 376 aa13.46□□□□□ -0.26
USH1C-201ENST00000005226 OR6F1Q8NGZ6 308 aa13.46□□□□□ -0.26
USH1C-201ENST00000005226 TRNT1Q96Q11 434 aaKnown RBP13.46□□□□□ -0.26
USH1C-201ENST00000005226 MCCC1Q96RQ3 725 aaPredicted RBP13.46□□□□□ -0.26
USH1C-201ENST00000005226 PKP4Q99569 1192 aa13.46□□□□□ -0.26
USH1C-201ENST00000005226 SLC30A2Q9BRI3 323 aa13.46□□□□□ -0.26
USH1C-201ENST00000005226 SMG9Q9H0W8 520 aaKnown RBP13.46□□□□□ -0.26
USH1C-201ENST00000005226 ZNF556Q9HAH1 456 aa13.46□□□□□ -0.26
USH1C-201ENST00000005226 YIPF1Q9Y548 306 aa13.46□□□□□ -0.26
USH1C-201ENST00000005226 SCN8AQ9UQD0 1980 aa13.45□□□□□ -0.26
USH1C-201ENST00000005226 ENTPD6O75354 484 aa13.45□□□□□ -0.26
USH1C-201ENST00000005226 ANXA8P13928 327 aa13.45□□□□□ -0.26
USH1C-201ENST00000005226 ZNF8P17098 575 aaPredicted RBP13.45□□□□□ -0.26
USH1C-201ENST00000005226 GJA1P17302 382 aa13.45□□□□□ -0.26
USH1C-201ENST00000005226 SOX6P35712 828 aa13.45□□□□□ -0.26
USH1C-201ENST00000005226 DEFA1P59665 94 aa13.45□□□□□ -0.26
USH1C-201ENST00000005226 DEFA3P59666 94 aa13.45□□□□□ -0.26
USH1C-201ENST00000005226 DAB2P98082 770 aa13.45□□□□□ -0.26
USH1C-201ENST00000005226 CYP4F8P98187 520 aa13.45□□□□□ -0.26
USH1C-201ENST00000005226 AGTRAPQ6RW13 159 aa13.45□□□□□ -0.26
USH1C-201ENST00000005226 PAQR6Q6TCH4 344 aa13.45□□□□□ -0.26
USH1C-201ENST00000005226 CCDC80Q76M96 950 aa13.45□□□□□ -0.26
USH1C-201ENST00000005226 SLC44A2Q8IWA5 706 aaPredicted RBP13.45□□□□□ -0.26
USH1C-201ENST00000005226 VPS37AQ8NEZ2 397 aa13.45□□□□□ -0.26
USH1C-201ENST00000005226 OR7G3Q8NG95 312 aa13.45□□□□□ -0.26
USH1C-201ENST00000005226 C2orf15Q8WU43 125 aaKnown RBP13.45□□□□□ -0.26
USH1C-201ENST00000005226 C11orf24Q96F05 449 aaPredicted RBP13.45□□□□□ -0.26
USH1C-201ENST00000005226 VPS35Q96QK1 796 aa13.45□□□□□ -0.26
USH1C-201ENST00000005226 OR2A14Q96R47 310 aa13.45□□□□□ -0.26
USH1C-201ENST00000005226 ASPNQ9BXN1 380 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms