RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 I3L521 148 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 SLC9A3R1O14745 358 aaPredicted RBP10.43□□□□□ -0.74
UPF3A-212ENST00000619079 ULK1O75385 1050 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 HLA-DQB1P01920 261 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 HMBSP08397 361 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 PIPP12273 146 aaPredicted RBP10.43□□□□□ -0.74
UPF3A-212ENST00000619079 ITGB7P26010 798 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 CRISP3P54108 245 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 CLDN8P56748 225 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 CDC42P60953 191 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 SLC10A7Q0GE19 358 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 GPNMBQ14956 572 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 PTPRNQ16849 979 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 PYDC2Q56P42 97 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 TRIQKQ629K1 86 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 PLAG1Q6DJT9 500 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 CNKSR3Q6P9H4 555 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 DOK6Q6PKX4 331 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 HSDL2Q6YN16 418 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 VTCN1Q7Z7D3 282 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 DDX53Q86TM3 631 aaKnown RBP10.43□□□□□ -0.74
UPF3A-212ENST00000619079 SLC44A2Q8IWA5 706 aaPredicted RBP10.43□□□□□ -0.74
UPF3A-212ENST00000619079 TEX26Q8N6G2 289 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 OR4M2Q8NGB6 313 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 OR13C4Q8NGS5 318 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 AP3S1Q92572 193 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 DIRAS2Q96HU8 199 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 METTL2AQ96IZ6 378 aaKnown RBP10.43□□□□□ -0.74
UPF3A-212ENST00000619079 MSLNLQ96KJ4 702 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 CRTAC1Q9NQ79 661 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 ZNF226Q9NYT6 803 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 COMMD10Q9Y6G5 202 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 HHLA1C9JL84 531 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 RFXANKO14593 260 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 SLC43A1O75387 559 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 TNFRSF21O75509 655 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 IL1AP01583 271 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 FGBP02675 491 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 CXCL10P02778 98 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 PTPN6P29350 595 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 LHX1P48742 406 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 PER3P56645 1201 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 EIF4EBP2Q13542 120 aaPredicted RBP10.43□□□□□ -0.74
UPF3A-212ENST00000619079 VEZF1Q14119 521 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 KLHL12Q53G59 568 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 USP39Q53GS9 565 aaKnown RBP10.43□□□□□ -0.74
UPF3A-212ENST00000619079 PSRC1Q6PGN9 363 aaPredicted RBP10.43□□□□□ -0.74
UPF3A-212ENST00000619079 TMC8Q8IU68 726 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 C9orf62Q8N4C0 152 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 CPA6Q8N4T0 437 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 ARRDC2Q8TBH0 407 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 SLC25A46Q96AG3 418 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 PCED1BQ96HM7 432 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 OPALINQ96PE5 141 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 FEVQ99581 238 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 ADAM2Q99965 735 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 CCM2Q9BSQ5 444 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 MRPL9Q9BYD2 267 aaKnown RBP10.43□□□□□ -0.74
UPF3A-212ENST00000619079 ZC4H2Q9NQZ6 224 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 NLE1Q9NVX2 485 aaPredicted RBP10.43□□□□□ -0.74
UPF3A-212ENST00000619079 PTTG3PQ9NZH4 202 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 SSR3Q9UNL2 185 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 PADI2Q9Y2J8 665 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 PCDHGA2Q9Y5H1 932 aa10.43□□□□□ -0.74
UPF3A-212ENST00000619079 COL4A4P53420 1690 aaPredicted RBP10.43□□□□□ -0.74
UPF3A-212ENST00000619079 NYNRINQ9P2P1 1898 aaKnown RBP10.43□□□□□ -0.74
UPF3A-212ENST00000619079 HYKKA2RU49 373 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 WASHC1A8K0Z3 465 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 PLA2G10O15496 165 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 PRPS2P11908 318 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 BCKDHAP12694 445 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 ENPP1P22413 925 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 RPS3P23396 243 aaKnown RBP eCLIP10.42□□□□□ -0.74
UPF3A-212ENST00000619079 TTPAP49638 278 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 CLDN20P56880 219 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 RPS14P62263 151 aaKnown RBP10.42□□□□□ -0.74
UPF3A-212ENST00000619079 OVOS1Q6IE37 1185 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 TEX261Q6UWH6 196 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 Q6ZPB1 254 aaPredicted RBP10.42□□□□□ -0.74
UPF3A-212ENST00000619079 TMEM86AQ8N2M4 240 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 NLGN4YQ8NFZ3 816 aaPredicted RBP10.42□□□□□ -0.74
UPF3A-212ENST00000619079 OR10G2Q8NGC3 310 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 CD200R1Q8TD46 325 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 EEF1AKMT1Q8WVE0 214 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 AKAP1Q92667 903 aaKnown RBP eCLIP10.42□□□□□ -0.74
UPF3A-212ENST00000619079 KCNJ9Q92806 393 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 TESCQ96BS2 214 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 C8orf48Q96LL4 319 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 GPR137Q96N19 417 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 SAMD11Q96NU1 681 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 PPA2Q9H2U2 334 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 SPNS1Q9H2V7 528 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 HHATLQ9HCP6 504 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 ABCB9Q9NP78 766 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 MCUBQ9NWR8 336 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 CLN6Q9NWW5 311 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 SH3BP4Q9P0V3 963 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 ZMYM5Q9UJ78 669 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 ING4Q9UNL4 249 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 RWDD3Q9Y3V2 267 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms