RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 MACC1Q6ZN28 852 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 TAF8Q7Z7C8 310 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 SYVN1Q86TM6 617 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 C17orf53Q8N3J3 647 aaPredicted RBP4.18□□□□□ -1.74
LINC00540-201ENST00000611481 TMCO5AQ8N6Q1 288 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 GDAP1Q8TB36 358 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 METTL6Q8TCB7 284 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 TM9SF4Q92544 642 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 AZIN2Q96A70 460 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 SMARCD1Q96GM5 515 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 HPDLQ96IR7 371 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 DDX50Q9BQ39 737 aaKnown RBP4.18□□□□□ -1.74
LINC00540-201ENST00000611481 NTPCRQ9BSD7 190 aaKnown RBP4.18□□□□□ -1.74
LINC00540-201ENST00000611481 RNF26Q9BY78 433 aaPredicted RBP4.18□□□□□ -1.74
LINC00540-201ENST00000611481 MS4A7Q9GZW8 240 aaPredicted RBP4.18□□□□□ -1.74
LINC00540-201ENST00000611481 FAM83DQ9H4H8 585 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 C17orf75Q9HAS0 396 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 DYRK4Q9NR20 520 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 HEY2Q9UBP5 337 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 LNPEPQ9UIQ6 1025 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 ITGA11Q9UKX5 1188 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 PADI1Q9ULC6 663 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 KCNJ14Q9UNX9 436 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 SHOC2Q9UQ13 582 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 SCML2Q9UQR0 700 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 SVEP1Q4LDE5 3571 aa4.18□□□□□ -1.74
LINC00540-201ENST00000611481 IGLON5A6NGN9 336 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 AQP7P3A6NL99 342 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 A8MXQ7 604 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 PSMA7O14818 248 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 CCNT2O60583 730 aaKnown RBP4.17□□□□□ -1.74
LINC00540-201ENST00000611481 TACC1O75410 805 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 SLU7O95391 586 aaKnown RBP4.17□□□□□ -1.74
LINC00540-201ENST00000611481 MOCS3O95396 460 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 CTSLP07711 333 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 T-ENOLP0DO92 83 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 PTPN4P29074 926 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 AKT1P31749 480 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 HPDP32754 393 aaPredicted RBP4.17□□□□□ -1.74
LINC00540-201ENST00000611481 KRT2P35908 639 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 CDKN2AP42771 156 aaKnown RBP4.17□□□□□ -1.74
LINC00540-201ENST00000611481 TSFMP43897 325 aaKnown RBP4.17□□□□□ -1.74
LINC00540-201ENST00000611481 ZNF41P51814 821 aaPredicted RBP4.17□□□□□ -1.74
LINC00540-201ENST00000611481 TDGF1P3P51864 188 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 NDST1P52848 882 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 RCAN1P53805 252 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 WNT3P56703 355 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 TBL3Q12788 808 aaKnown RBP4.17□□□□□ -1.74
LINC00540-201ENST00000611481 PTP4A2Q12974 167 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 DCTN2Q13561 401 aaKnown RBP4.17□□□□□ -1.74
LINC00540-201ENST00000611481 CDH18Q13634 790 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 ATP1A4Q13733 1029 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 SYCP1Q15431 976 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 ADIPOQQ15848 244 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 CYP1B1Q16678 543 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 INSCQ1MX18 579 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 FSCBQ5H9T9 825 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 EARS2Q5JPH6 523 aaKnown RBP4.17□□□□□ -1.74
LINC00540-201ENST00000611481 GARNL3Q5VVW2 1013 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 LIPMQ5VYY2 423 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 SLC39A4Q6P5W5 647 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 ALKBH5Q6P6C2 394 aaKnown RBP4.17□□□□□ -1.74
LINC00540-201ENST00000611481 ENPP7Q6UWV6 458 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 ABRAXAS1Q6UWZ7 409 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 ZDHHC24Q6UX98 284 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 PAQR9Q6ZVX9 377 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 USP43Q70EL4 1123 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 ERN2Q76MJ5 926 aaKnown RBP4.17□□□□□ -1.74
LINC00540-201ENST00000611481 GALNT7Q86SF2 657 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 SCD5Q86SK9 330 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 VPS36Q86VN1 386 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 APCDD1Q8J025 514 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 ARFGAP1Q8N6T3 406 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 BCORP1Q8N888 145 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 ZNF557Q8N988 423 aaPredicted RBP4.17□□□□□ -1.74
LINC00540-201ENST00000611481 DNAAF3Q8N9W5 541 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 FIBINQ8TAL6 211 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 ERMNQ8TAM6 284 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 ELMO2Q96JJ3 720 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 SECISBP2Q96T21 854 aaKnown RBP4.17□□□□□ -1.74
LINC00540-201ENST00000611481 TRMOQ9BU70 441 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 ZBTB20Q9HC78 741 aaPredicted RBP4.17□□□□□ -1.74
LINC00540-201ENST00000611481 LHX9Q9NQ69 397 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 SLC35C2Q9NQQ7 365 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 ARHGEF38Q9NXL2 777 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 ASIC5Q9NY37 505 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 KCNN3Q9UGI6 736 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 XPO7Q9UIA9 1087 aaKnown RBP4.17□□□□□ -1.74
LINC00540-201ENST00000611481 VPS51Q9UID3 782 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 SIX4Q9UIU6 781 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 AMFRQ9UKV5 643 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 NFU1Q9UMS0 254 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 CNTN6Q9UQ52 1028 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 KIF3AQ9Y496 699 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 CCL27Q9Y4X3 112 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 HS3ST3B1Q9Y662 390 aa4.17□□□□□ -1.74
LINC00540-201ENST00000611481 EPPK1P58107 5090 aaKnown RBP4.16□□□□□ -1.74
LINC00540-201ENST00000611481 IGHV1OR21-1A0A087WYE8 117 aa4.16□□□□□ -1.74
LINC00540-201ENST00000611481 GOLGA6L7A0A1B0GV03 622 aa4.16□□□□□ -1.74
LINC00540-201ENST00000611481 FAM90A20PA6NIJ5 464 aa4.16□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms