RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 MMP21Q8N119 569 aa16.31■□□□□ 0.2
SHKBP1-216ENST00000598201 PNPT1Q8TCS8 783 aaKnown RBP16.31■□□□□ 0.2
SHKBP1-216ENST00000598201 SNX19Q92543 992 aa16.31■□□□□ 0.2
SHKBP1-216ENST00000598201 NCLNQ969V3 563 aa16.31■□□□□ 0.2
SHKBP1-216ENST00000598201 TSACCQ96A04 125 aaPredicted RBP16.31■□□□□ 0.2
SHKBP1-216ENST00000598201 FAM162AQ96A26 154 aa16.31■□□□□ 0.2
SHKBP1-216ENST00000598201 F2RL3Q96RI0 385 aa16.31■□□□□ 0.2
SHKBP1-216ENST00000598201 ZNF717Q9BY31 904 aaPredicted RBP16.31■□□□□ 0.2
SHKBP1-216ENST00000598201 Q9H521 79 aa16.31■□□□□ 0.2
SHKBP1-216ENST00000598201 TBC1D29Q9UFV1 150 aa16.31■□□□□ 0.2
SHKBP1-216ENST00000598201 BTNL2Q9UIR0 455 aa16.31■□□□□ 0.2
SHKBP1-216ENST00000598201 UTS2RQ9UKP6 389 aa16.31■□□□□ 0.2
SHKBP1-216ENST00000598201 TMEM221A6NGB7 291 aa16.31■□□□□ 0.2
SHKBP1-216ENST00000598201 ANKDD1BA6NHY2 528 aa16.31■□□□□ 0.2
SHKBP1-216ENST00000598201 EVPLLA8MZ36 301 aa16.31■□□□□ 0.2
SHKBP1-216ENST00000598201 M0R296 226 aa16.31■□□□□ 0.2
SHKBP1-216ENST00000598201 RTCAO00442 366 aaKnown RBP16.31■□□□□ 0.2
SHKBP1-216ENST00000598201 DLGAP1O14490 977 aa16.31■□□□□ 0.2
SHKBP1-216ENST00000598201 PLPP1O14494 284 aa16.31■□□□□ 0.2
SHKBP1-216ENST00000598201 LCMT2O60294 686 aaKnown RBP16.31■□□□□ 0.2
SHKBP1-216ENST00000598201 EPN2O95208 641 aa16.31■□□□□ 0.2
SHKBP1-216ENST00000598201 PDGFBP01127 241 aaPredicted RBP16.31■□□□□ 0.2
SHKBP1-216ENST00000598201 FURINP09958 794 aa16.31■□□□□ 0.2
SHKBP1-216ENST00000598201 RAP2AP10114 183 aa16.31■□□□□ 0.2
SHKBP1-216ENST00000598201 TPP2P29144 1249 aaPredicted RBP16.31■□□□□ 0.2
SHKBP1-216ENST00000598201 CSNK1G2P78368 415 aa16.31■□□□□ 0.2
SHKBP1-216ENST00000598201 CTBSQ01459 385 aa16.31■□□□□ 0.2
SHKBP1-216ENST00000598201 C2orf80Q0P641 193 aa16.31■□□□□ 0.2
SHKBP1-216ENST00000598201 GAB1Q13480 694 aa16.31■□□□□ 0.2
SHKBP1-216ENST00000598201 MPEG1Q2M385 716 aa16.31■□□□□ 0.2
SHKBP1-216ENST00000598201 ISLR2Q6UXK2 745 aa16.31■□□□□ 0.2
SHKBP1-216ENST00000598201 DENND6BQ8NEG7 585 aa16.31■□□□□ 0.2
SHKBP1-216ENST00000598201 OR2L8Q8NGY9 312 aa16.31■□□□□ 0.2
SHKBP1-216ENST00000598201 CCL4L1Q8NHW4 92 aa16.31■□□□□ 0.2
SHKBP1-216ENST00000598201 JPH3Q8WXH2 748 aaPredicted RBP16.31■□□□□ 0.2
SHKBP1-216ENST00000598201 PRPF18Q99633 342 aaKnown RBP16.31■□□□□ 0.2
SHKBP1-216ENST00000598201 MS4A8Q9BY19 250 aa16.31■□□□□ 0.2
SHKBP1-216ENST00000598201 LMAN1LQ9HAT1 526 aa16.31■□□□□ 0.2
SHKBP1-216ENST00000598201 NTN4Q9HB63 628 aa16.31■□□□□ 0.2
SHKBP1-216ENST00000598201 MYNNQ9NPC7 610 aa16.31■□□□□ 0.2
SHKBP1-216ENST00000598201 DCAF13Q9NV06 445 aaKnown RBP16.31■□□□□ 0.2
SHKBP1-216ENST00000598201 MAPRE3Q9UPY8 281 aa16.31■□□□□ 0.2
SHKBP1-216ENST00000598201 TECTAO75443 2155 aa16.3■□□□□ 0.2
SHKBP1-216ENST00000598201 C1orf226A1L170 272 aa16.3■□□□□ 0.2
SHKBP1-216ENST00000598201 PRKD3O94806 890 aa16.3■□□□□ 0.2
SHKBP1-216ENST00000598201 LDLRP01130 860 aa16.3■□□□□ 0.2
SHKBP1-216ENST00000598201 GPX2P18283 190 aa16.3■□□□□ 0.2
SHKBP1-216ENST00000598201 HNRNPA2B1P22626 353 aaKnown RBP16.3■□□□□ 0.2
SHKBP1-216ENST00000598201 CXCR2P25025 360 aa16.3■□□□□ 0.2
SHKBP1-216ENST00000598201 PRDX1Q06830 199 aaKnown RBP16.3■□□□□ 0.2
SHKBP1-216ENST00000598201 FZD5Q13467 585 aa16.3■□□□□ 0.2
SHKBP1-216ENST00000598201 PDE7AQ13946 482 aa16.3■□□□□ 0.2
SHKBP1-216ENST00000598201 FAM98BQ52LJ0 330 aaKnown RBP16.3■□□□□ 0.2
SHKBP1-216ENST00000598201 DEPDC1Q5TB30 811 aa16.3■□□□□ 0.2
SHKBP1-216ENST00000598201 ANXA8L1Q5VT79 327 aa16.3■□□□□ 0.2
SHKBP1-216ENST00000598201 KHDRBS2Q5VWX1 349 aaKnown RBP16.3■□□□□ 0.2
SHKBP1-216ENST00000598201 OR52E8Q6IFG1 317 aa16.3■□□□□ 0.2
SHKBP1-216ENST00000598201 SPRED1Q7Z699 444 aa16.3■□□□□ 0.2
SHKBP1-216ENST00000598201 SERPINA11Q86U17 422 aa16.3■□□□□ 0.2
SHKBP1-216ENST00000598201 RAB42Q8N4Z0 105 aa16.3■□□□□ 0.2
SHKBP1-216ENST00000598201 PJA1Q8NG27 643 aa16.3■□□□□ 0.2
SHKBP1-216ENST00000598201 OR52E4Q8NGH9 312 aa16.3■□□□□ 0.2
SHKBP1-216ENST00000598201 CIDECQ96AQ7 238 aaPredicted RBP16.3■□□□□ 0.2
SHKBP1-216ENST00000598201 PHF12Q96QT6 1004 aa16.3■□□□□ 0.2
SHKBP1-216ENST00000598201 MVB12BQ9H7P6 319 aa16.3■□□□□ 0.2
SHKBP1-216ENST00000598201 SIT1Q9Y3P8 196 aa16.3■□□□□ 0.2
SHKBP1-216ENST00000598201 PCDHB11Q9Y5F2 797 aa16.3■□□□□ 0.2
SHKBP1-216ENST00000598201 KCNK5O95279 499 aa16.3■□□□□ 0.2
SHKBP1-216ENST00000598201 SERPINA1P01009 418 aa16.3■□□□□ 0.2
SHKBP1-216ENST00000598201 RETP07949 1114 aa16.3■□□□□ 0.2
SHKBP1-216ENST00000598201 IL3P08700 152 aa16.3■□□□□ 0.2
SHKBP1-216ENST00000598201 CHN2P52757 468 aa16.3■□□□□ 0.2
SHKBP1-216ENST00000598201 CHRNB3Q05901 458 aa16.3■□□□□ 0.2
SHKBP1-216ENST00000598201 LRRC32Q14392 662 aa16.3■□□□□ 0.2
SHKBP1-216ENST00000598201 C16orf72Q14CZ0 275 aa16.3■□□□□ 0.2
SHKBP1-216ENST00000598201 ZCCHC8Q6NZY4 707 aaKnown RBP16.3■□□□□ 0.2
SHKBP1-216ENST00000598201 CXorf40BQ96DE9 158 aa16.3■□□□□ 0.2
SHKBP1-216ENST00000598201 WDR92Q96MX6 357 aa16.3■□□□□ 0.2
SHKBP1-216ENST00000598201 DPH2Q9BQC3 489 aaPredicted RBP16.3■□□□□ 0.2
SHKBP1-216ENST00000598201 BHLHE41Q9C0J9 482 aaPredicted RBP16.3■□□□□ 0.2
SHKBP1-216ENST00000598201 TPT1P8Q9HAU6 139 aa16.3■□□□□ 0.2
SHKBP1-216ENST00000598201 HEATR5BQ9P2D3 2071 aa16.3■□□□□ 0.2
SHKBP1-216ENST00000598201 LRRC72A6NJI9 287 aa16.29■□□□□ 0.2
SHKBP1-216ENST00000598201 UPK1AO00322 258 aa16.29■□□□□ 0.2
SHKBP1-216ENST00000598201 RNASET2O00584 256 aaKnown RBP16.29■□□□□ 0.2
SHKBP1-216ENST00000598201 CLOCKO15516 846 aa16.29■□□□□ 0.2
SHKBP1-216ENST00000598201 OR1F1O43749 312 aa16.29■□□□□ 0.2
SHKBP1-216ENST00000598201 PRICKLE3O43900 615 aaPredicted RBP16.29■□□□□ 0.2
SHKBP1-216ENST00000598201 ABCB1P08183 1280 aaPredicted RBP16.29■□□□□ 0.2
SHKBP1-216ENST00000598201 PEBP1P30086 187 aaKnown RBP16.29■□□□□ 0.2
SHKBP1-216ENST00000598201 BSGP35613 385 aa16.29■□□□□ 0.2
SHKBP1-216ENST00000598201 ADRM1Q16186 407 aa16.29■□□□□ 0.2
SHKBP1-216ENST00000598201 NHSL2Q5HYW2 709 aa16.29■□□□□ 0.2
SHKBP1-216ENST00000598201 ADCK2Q7Z695 626 aa16.29■□□□□ 0.2
SHKBP1-216ENST00000598201 PTOV1Q86YD1 416 aa16.29■□□□□ 0.2
SHKBP1-216ENST00000598201 CHERPQ8IWX8 916 aaKnown RBP16.29■□□□□ 0.2
SHKBP1-216ENST00000598201 ZZZ3Q8IYH5 903 aa16.29■□□□□ 0.2
SHKBP1-216ENST00000598201 ADGRF3Q8IZF5 1079 aa16.29■□□□□ 0.2
SHKBP1-216ENST00000598201 SYNPOQ8N3V7 929 aa16.29■□□□□ 0.2
SHKBP1-216ENST00000598201 VPS37AQ8NEZ2 397 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms