RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	CCDC86	Q9H6F5	360 aa	Known RBP	11.21	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	RC3H2	Q9HBD1	1191 aa	Known RBP	11.21	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	PCDHB9	Q9Y5E1	797 aa		11.21	□□□□□ -0.61
CDK5RAP3-231	ENST00000584063	CFAP99	D6REC4	459 aa		11.21	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063		G3V2T6	193 aa		11.21	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	ESRRB	O95718	433 aa		11.21	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	FTH1	P02794	183 aa		11.21	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	C6	P13671	934 aa		11.21	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	PFKL	P17858	780 aa		11.21	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	HTR1B	P28222	390 aa		11.21	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	ATP4B	P51164	291 aa		11.21	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	ABAT	P80404	500 aa		11.21	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	RING1	Q06587	406 aa		11.21	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	SMN1	Q16637	294 aa	Known RBP	11.21	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	DPY19L1	Q2PZI1	675 aa		11.21	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	ZNF829	Q3KNS6	432 aa	Predicted RBP	11.21	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	CRTC3	Q6UUV7	619 aa		11.21	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	TMC5	Q6UXY8	1006 aa		11.21	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	DLEU7	Q6UYE1	221 aa		11.21	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	ZDHHC13	Q8IUH4	622 aa		11.21	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	OR4F6	Q8NGB9	312 aa		11.21	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	MRPS31	Q92665	395 aa	Known RBP	11.21	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	PPP1R2P1	Q96PQ5	205 aa		11.21	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	BCL2L14	Q9BZR8	327 aa		11.21	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	RIMS4	Q9H426	269 aa	Predicted RBP	11.21	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	TRMT6	Q9UJA5	497 aa	Known RBP	11.21	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	TINAG	Q9UJW2	476 aa		11.21	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	GPR171	O14626	319 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	EFCAB14	O75071	495 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	MATN4	O95460	622 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	F11	P03951	625 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	OPN1MW	P04001	364 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	RPS17	P08708	135 aa	Known RBP	11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	OPN1MW2	P0DN77	364 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	OPN1MW3	P0DN78	364 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	ITGA2	P17301	1181 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	CR2	P20023	1033 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	HLA-F	P30511	346 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	HLCS	P50747	726 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	CD47	Q08722	323 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	GRSF1	Q12849	480 aa	Known RBP eCLIP	11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	CDH18	Q13634	790 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	SPANXN4	Q5MJ08	99 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	SULT1C3	Q6IMI6	304 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	FAM151B	Q6UXP7	276 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	FRA10AC1	Q70Z53	315 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	DET1	Q7L5Y6	550 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	RNF175	Q8N4F7	328 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	OR13F1	Q8NGS4	319 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	GPR150	Q8NGU9	434 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	FAM162A	Q96A26	154 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	C11orf24	Q96F05	449 aa	Predicted RBP	11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	PRRX2	Q99811	253 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	LRRC3	Q9BY71	257 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	PAK1IP1	Q9NWT1	392 aa	Predicted RBP	11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	CFAP97	Q9P2B7	532 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	DAPK2	Q9UIK4	370 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	PRSS21	Q9Y6M0	314 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	PLXNA3	P51805	1871 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	TRIO	O75962	3097 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	MYO1G	B0I1T2	1018 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	EED	O75530	441 aa	Known RBP	11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	PRSS23	O95084	383 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	EFEMP2	O95967	443 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	HMGN1	P05114	100 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	ALPL	P05186	524 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	ADH1A	P07327	375 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	PKM	P14618	531 aa	Known RBP	11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	IRS1	P35568	1242 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	ERVK-8	P63133	956 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	PHC1	P78364	1004 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	IL5RA	Q01344	420 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	GTF2H3	Q13889	308 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	DAG1	Q14118	895 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	LRRC73	Q5JTD7	316 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	TMEM240	Q5SV17	173 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	FAM109B	Q6ICB4	259 aa	Predicted RBP	11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	DHRS4L2	Q6PKH6	230 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	PACRGL	Q8N7B6	248 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	OPALIN	Q96PE5	141 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	EGFL8	Q99944	293 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	FEM1A	Q9BSK4	669 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	DERL2	Q9GZP9	239 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	FBRS	Q9HAH7	460 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	KL	Q9UEF7	1012 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	VCAN	P13611	3396 aa		11.2	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	DNAH14	Q0VDD8	3507 aa		11.19	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063		A0A1W2PPH5	198 aa		11.19	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063		L7N2F9	121 aa		11.19	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	LDLRAD4	O15165	306 aa		11.19	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	NDUFA2	O43678	99 aa		11.19	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	BCAS1	O75363	584 aa	Predicted RBP	11.19	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	SEMA3D	O95025	777 aa		11.19	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	CTSA	P10619	480 aa		11.19	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	UROS	P10746	265 aa		11.19	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	CRHBP	P24387	322 aa		11.19	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	NTHL1	P78549	312 aa		11.19	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	PPIG	Q13427	754 aa	Known RBP eCLIP	11.19	□□□□□ -0.62	8e-9	■■■■□ 23.1
CDK5RAP3-231	ENST00000584063	TIGD6	Q17RP2	521 aa		11.19	□□□□□ -0.62
CDK5RAP3-231	ENST00000584063	ARMC12	Q5T9G4	340 aa		11.19	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms