RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 TM9SF4Q92544 642 aa12.68□□□□□ -0.38
CLK3-216ENST00000564468 UBE2E3Q969T4 207 aa12.68□□□□□ -0.38
CLK3-216ENST00000564468 ISL2Q96A47 359 aa12.68□□□□□ -0.38
CLK3-216ENST00000564468 MTBPQ96DY7 904 aa12.68□□□□□ -0.38
CLK3-216ENST00000564468 OR1F2PQ96R84 312 aa12.68□□□□□ -0.38
CLK3-216ENST00000564468 SMAD5Q99717 465 aaKnown RBP12.68□□□□□ -0.38
CLK3-216ENST00000564468 CCDC77Q9BR77 488 aa12.68□□□□□ -0.38
CLK3-216ENST00000564468 SLC6A16Q9GZN6 736 aa12.68□□□□□ -0.38
CLK3-216ENST00000564468 SPNS1Q9H2V7 528 aa12.68□□□□□ -0.38
CLK3-216ENST00000564468 COPG2Q9UBF2 871 aa12.68□□□□□ -0.38
CLK3-216ENST00000564468 C19orf25Q9UFG5 118 aaPredicted RBP12.68□□□□□ -0.38
CLK3-216ENST00000564468 MKL2Q9ULH7 1088 aa12.68□□□□□ -0.38
CLK3-216ENST00000564468 TMCO1Q9UM00 188 aa12.68□□□□□ -0.38
CLK3-216ENST00000564468 NAALAD2Q9Y3Q0 740 aa12.68□□□□□ -0.38
CLK3-216ENST00000564468 DOPEY2Q9Y3R5 2298 aa12.68□□□□□ -0.38
CLK3-216ENST00000564468 SPTAN1Q13813 2472 aaKnown RBP12.67□□□□□ -0.38
CLK3-216ENST00000564468 A0A088AWK7 358 aa12.67□□□□□ -0.38
CLK3-216ENST00000564468 NSG1A0A0A6YYJ2 146 aa12.67□□□□□ -0.38
CLK3-216ENST00000564468 UBXN8O00124 270 aa12.67□□□□□ -0.38
CLK3-216ENST00000564468 RIPK2O43353 540 aa12.67□□□□□ -0.38
CLK3-216ENST00000564468 GALR3O60755 368 aaPredicted RBP12.67□□□□□ -0.38
CLK3-216ENST00000564468 CLEC3AO75596 197 aa12.67□□□□□ -0.38
CLK3-216ENST00000564468 GFAPP14136 432 aa12.67□□□□□ -0.38
CLK3-216ENST00000564468 EPB42P16452 691 aa12.67□□□□□ -0.38
CLK3-216ENST00000564468 NR1D1P20393 614 aa12.67□□□□□ -0.38
CLK3-216ENST00000564468 ZNF10P21506 573 aaPredicted RBP12.67□□□□□ -0.38
CLK3-216ENST00000564468 XCR1P46094 333 aa12.67□□□□□ -0.38
CLK3-216ENST00000564468 GLRBP48167 497 aa12.67□□□□□ -0.38
CLK3-216ENST00000564468 KCNC1P48547 511 aa12.67□□□□□ -0.38
CLK3-216ENST00000564468 ALDH18A1P54886 795 aaKnown RBP12.67□□□□□ -0.38
CLK3-216ENST00000564468 MAT1AQ00266 395 aaKnown RBP12.67□□□□□ -0.38
CLK3-216ENST00000564468 IRF9Q00978 393 aa12.67□□□□□ -0.38
CLK3-216ENST00000564468 IRF8Q02556 426 aa12.67□□□□□ -0.38
CLK3-216ENST00000564468 UBAP2LQ14157 1087 aaKnown RBP12.67□□□□□ -0.38
CLK3-216ENST00000564468 TBCCQ15814 346 aa12.67□□□□□ -0.38
CLK3-216ENST00000564468 SYT16Q17RD7 645 aa12.67□□□□□ -0.38
CLK3-216ENST00000564468 UBAP2Q5T6F2 1119 aaKnown RBP12.67□□□□□ -0.38
CLK3-216ENST00000564468 MFSD4BQ5TF39 518 aa12.67□□□□□ -0.38
CLK3-216ENST00000564468 METTL2BQ6P1Q9 378 aaKnown RBP12.67□□□□□ -0.38
CLK3-216ENST00000564468 NDUFAF7Q7L592 441 aa12.67□□□□□ -0.38
CLK3-216ENST00000564468 PRSS41Q7RTY9 318 aa12.67□□□□□ -0.38
CLK3-216ENST00000564468 LAPTM4BQ86VI4 370 aa12.67□□□□□ -0.38
CLK3-216ENST00000564468 UHMK1Q8TAS1 419 aaKnown RBP12.67□□□□□ -0.38
CLK3-216ENST00000564468 DCAKDQ8WVC6 231 aa12.67□□□□□ -0.38
CLK3-216ENST00000564468 ESAMQ96AP7 390 aa12.67□□□□□ -0.38
CLK3-216ENST00000564468 MOCOSQ96EN8 888 aa12.67□□□□□ -0.38
CLK3-216ENST00000564468 WDR34Q96EX3 536 aa12.67□□□□□ -0.38
CLK3-216ENST00000564468 FAR2Q96K12 515 aa12.67□□□□□ -0.38
CLK3-216ENST00000564468 NUDT9Q9BW91 350 aa12.67□□□□□ -0.38
CLK3-216ENST00000564468 RIC8BQ9NVN3 520 aa12.67□□□□□ -0.38
CLK3-216ENST00000564468 FETUBQ9UGM5 382 aa12.67□□□□□ -0.38
CLK3-216ENST00000564468 ANGPTL3Q9Y5C1 460 aa12.67□□□□□ -0.38
CLK3-216ENST00000564468 TNPO3Q9Y5L0 923 aaKnown RBP12.67□□□□□ -0.38
CLK3-216ENST00000564468 A0A1W2PQ72 361 aa12.66□□□□□ -0.38
CLK3-216ENST00000564468 TRIM49D1C9J1S8 452 aa12.66□□□□□ -0.38
CLK3-216ENST00000564468 K7EM74 188 aa12.66□□□□□ -0.38
CLK3-216ENST00000564468 FFAR3O14843 346 aa12.66□□□□□ -0.38
CLK3-216ENST00000564468 GPR42O15529 346 aa12.66□□□□□ -0.38
CLK3-216ENST00000564468 ALOX12BO75342 701 aa12.66□□□□□ -0.38
CLK3-216ENST00000564468 RDH16O75452 317 aa12.66□□□□□ -0.38
CLK3-216ENST00000564468 ZNF888P0CJ79 500 aaPredicted RBP12.66□□□□□ -0.38
CLK3-216ENST00000564468 C8orf89P0DMQ9 161 aa12.66□□□□□ -0.38
CLK3-216ENST00000564468 GP1BBP13224 206 aa12.66□□□□□ -0.38
CLK3-216ENST00000564468 ICAM2P13598 275 aa12.66□□□□□ -0.38
CLK3-216ENST00000564468 JAK1P23458 1154 aa12.66□□□□□ -0.38
CLK3-216ENST00000564468 GMPRP36959 345 aa12.66□□□□□ -0.38
CLK3-216ENST00000564468 CASP2P42575 452 aa12.66□□□□□ -0.38
CLK3-216ENST00000564468 MAGEA12P43365 314 aa12.66□□□□□ -0.38
CLK3-216ENST00000564468 PIK3CGP48736 1102 aa12.66□□□□□ -0.38
CLK3-216ENST00000564468 AGTR2P50052 363 aa12.66□□□□□ -0.38
CLK3-216ENST00000564468 TLE1Q04724 770 aa12.66□□□□□ -0.38
CLK3-216ENST00000564468 PCDH1Q08174 1060 aa12.66□□□□□ -0.38
CLK3-216ENST00000564468 CHIT1Q13231 466 aa12.66□□□□□ -0.38
CLK3-216ENST00000564468 DOC2AQ14183 400 aa12.66□□□□□ -0.38
CLK3-216ENST00000564468 SETDB1Q15047 1291 aa12.66□□□□□ -0.38
CLK3-216ENST00000564468 MINDY4Q4G0A6 757 aa12.66□□□□□ -0.38
CLK3-216ENST00000564468 DEFB134Q4QY38 66 aa12.66□□□□□ -0.38
CLK3-216ENST00000564468 FBXO48Q5FWF7 155 aa12.66□□□□□ -0.38
CLK3-216ENST00000564468 TOR1AIP1Q5JTV8 583 aa12.66□□□□□ -0.38
CLK3-216ENST00000564468 TEX35Q5T0J7 233 aa12.66□□□□□ -0.38
CLK3-216ENST00000564468 TMEM205Q6UW68 189 aa12.66□□□□□ -0.38
CLK3-216ENST00000564468 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.66□□□□□ -0.38
CLK3-216ENST00000564468 UTP15Q8TED0 518 aaKnown RBP12.66□□□□□ -0.38
CLK3-216ENST00000564468 CREB3L4Q8TEY5 395 aa12.66□□□□□ -0.38
CLK3-216ENST00000564468 CCT6BQ92526 530 aa12.66□□□□□ -0.38
CLK3-216ENST00000564468 GAL3ST3Q96A11 431 aa12.66□□□□□ -0.38
CLK3-216ENST00000564468 SCYL1Q96KG9 808 aa12.66□□□□□ -0.38
CLK3-216ENST00000564468 LHPPQ9H008 270 aa12.66□□□□□ -0.38
CLK3-216ENST00000564468 PRM3Q9NNZ6 103 aa12.66□□□□□ -0.38
CLK3-216ENST00000564468 HCN3Q9P1Z3 774 aa12.66□□□□□ -0.38
CLK3-216ENST00000564468 RP1L1Q8IWN7 2480 aaPredicted RBP12.66□□□□□ -0.38
CLK3-216ENST00000564468 BSNQ9UPA5 3926 aa12.65□□□□□ -0.38
CLK3-216ENST00000564468 USP9XQ93008 2570 aaPredicted RBP12.65□□□□□ -0.38
CLK3-216ENST00000564468 LOC102723996A0A087X1L8 192 aa12.65□□□□□ -0.38
CLK3-216ENST00000564468 IQANK1A0A1B0GTG1 560 aa12.65□□□□□ -0.38
CLK3-216ENST00000564468 PSMD12O00232 456 aaPredicted RBP12.65□□□□□ -0.38
CLK3-216ENST00000564468 KLK8O60259 260 aa12.65□□□□□ -0.38
CLK3-216ENST00000564468 PDGFAP04085 211 aa12.65□□□□□ -0.38
CLK3-216ENST00000564468 SMIM10L1P0DMW3 83 aa12.65□□□□□ -0.38
CLK3-216ENST00000564468 MTHFD2P13995 350 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms