RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 TBKBP1A7MCY6 615 aa15.68■□□□□ 0.1
SHMT2-232ENST00000557487 H0YIV9 168 aa15.68■□□□□ 0.1
SHMT2-232ENST00000557487 SLITRK5O94991 958 aa15.68■□□□□ 0.1
SHMT2-232ENST00000557487 PTHP01270 115 aa15.68■□□□□ 0.1
SHMT2-232ENST00000557487 GRK5P34947 590 aa15.68■□□□□ 0.1
SHMT2-232ENST00000557487 BMPR1AP36894 532 aa15.68■□□□□ 0.1
SHMT2-232ENST00000557487 IDH2P48735 452 aaKnown RBP15.68■□□□□ 0.1
SHMT2-232ENST00000557487 SLC11A1P49279 550 aa15.68■□□□□ 0.1
SHMT2-232ENST00000557487 PNLIPRP1P54315 467 aa15.68■□□□□ 0.1
SHMT2-232ENST00000557487 FCHO2Q0JRZ9 810 aa15.68■□□□□ 0.1
SHMT2-232ENST00000557487 ZXDCQ2QGD7 858 aaPredicted RBP15.68■□□□□ 0.1
SHMT2-232ENST00000557487 FAM92BQ6ZTR7 304 aa15.68■□□□□ 0.1
SHMT2-232ENST00000557487 TRIM69Q86WT6 500 aa15.68■□□□□ 0.1
SHMT2-232ENST00000557487 RNF130Q86XS8 419 aa15.68■□□□□ 0.1
SHMT2-232ENST00000557487 RASGRP3Q8IV61 690 aa15.68■□□□□ 0.1
SHMT2-232ENST00000557487 KLHDC8AQ8IYD2 350 aa15.68■□□□□ 0.1
SHMT2-232ENST00000557487 LGI4Q8N135 537 aa15.68■□□□□ 0.1
SHMT2-232ENST00000557487 GOT1L1Q8NHS2 421 aaPredicted RBP15.68■□□□□ 0.1
SHMT2-232ENST00000557487 TRMT2BQ96GJ1 504 aaKnown RBP15.68■□□□□ 0.1
SHMT2-232ENST00000557487 CHCHD6Q9BRQ6 235 aa15.68■□□□□ 0.1
SHMT2-232ENST00000557487 CENPOQ9BU64 300 aa15.68■□□□□ 0.1
SHMT2-232ENST00000557487 TM6SF2Q9BZW4 377 aa15.68■□□□□ 0.1
SHMT2-232ENST00000557487 AFF4Q9UHB7 1163 aaKnown RBP15.68■□□□□ 0.1
SHMT2-232ENST00000557487 PPIL1Q9Y3C6 166 aa15.68■□□□□ 0.1
SHMT2-232ENST00000557487 PCDHGB2Q9Y5G2 931 aa15.68■□□□□ 0.1
SHMT2-232ENST00000557487 TMEM229AB2RXF0 380 aa15.67■□□□□ 0.1
SHMT2-232ENST00000557487 GFRA2O00451 464 aa15.67■□□□□ 0.1
SHMT2-232ENST00000557487 IDH3BO43837 385 aa15.67■□□□□ 0.1
SHMT2-232ENST00000557487 KIAA0513O60268 411 aa15.67■□□□□ 0.1
SHMT2-232ENST00000557487 IRF1P10914 325 aa15.67■□□□□ 0.1
SHMT2-232ENST00000557487 HMGA1P17096 107 aaKnown RBP15.67■□□□□ 0.1
SHMT2-232ENST00000557487 HMGA2P52926 109 aa15.67■□□□□ 0.1
SHMT2-232ENST00000557487 OR2B6P58173 313 aa15.67■□□□□ 0.1
SHMT2-232ENST00000557487 COPZ1P61923 177 aa15.67■□□□□ 0.1
SHMT2-232ENST00000557487 SPIN4Q56A73 249 aa15.67■□□□□ 0.1
SHMT2-232ENST00000557487 DDX59Q5T1V6 619 aaKnown RBP eCLIP15.67■□□□□ 0.1
SHMT2-232ENST00000557487 GRHL2Q6ISB3 625 aa15.67■□□□□ 0.1
SHMT2-232ENST00000557487 TRAF7Q6Q0C0 670 aa15.67■□□□□ 0.1
SHMT2-232ENST00000557487 TSEN54Q7Z6J9 526 aaKnown RBP15.67■□□□□ 0.1
SHMT2-232ENST00000557487 SLC30A8Q8IWU4 369 aa15.67■□□□□ 0.1
SHMT2-232ENST00000557487 UBQLNLQ8IYU4 475 aa15.67■□□□□ 0.1
SHMT2-232ENST00000557487 GPR26Q8NDV2 337 aa15.67■□□□□ 0.1
SHMT2-232ENST00000557487 SH3KBP1Q96B97 665 aa15.67■□□□□ 0.1
SHMT2-232ENST00000557487 BHLHE41Q9C0J9 482 aaPredicted RBP15.67■□□□□ 0.1
SHMT2-232ENST00000557487 TP63Q9H3D4 680 aaPredicted RBP15.67■□□□□ 0.1
SHMT2-232ENST00000557487 RAD18Q9NS91 495 aa15.67■□□□□ 0.1
SHMT2-232ENST00000557487 CLN6Q9NWW5 311 aa15.67■□□□□ 0.1
SHMT2-232ENST00000557487 CAPN5O15484 640 aaPredicted RBP15.66■□□□□ 0.1
SHMT2-232ENST00000557487 PRAMEF4O60810 478 aa15.66■□□□□ 0.1
SHMT2-232ENST00000557487 KRT75O95678 551 aa15.66■□□□□ 0.1
SHMT2-232ENST00000557487 RPL3P39023 403 aaKnown RBP15.66■□□□□ 0.1
SHMT2-232ENST00000557487 PRIM2P49643 509 aa15.66■□□□□ 0.1
SHMT2-232ENST00000557487 PFN3P60673 137 aa15.66■□□□□ 0.1
SHMT2-232ENST00000557487 SPIBQ01892 262 aa15.66■□□□□ 0.1
SHMT2-232ENST00000557487 PRAMEF9Q5VWM5 478 aa15.66■□□□□ 0.1
SHMT2-232ENST00000557487 USP45Q70EL2 814 aa15.66■□□□□ 0.1
SHMT2-232ENST00000557487 GEMIN6Q8WXD5 167 aaKnown RBP15.66■□□□□ 0.1
SHMT2-232ENST00000557487 CLP1Q92989 425 aaKnown RBP15.66■□□□□ 0.1
SHMT2-232ENST00000557487 ASIC4Q96FT7 647 aa15.66■□□□□ 0.1
SHMT2-232ENST00000557487 SCRN2Q96FV2 425 aa15.66■□□□□ 0.1
SHMT2-232ENST00000557487 MGLLQ99685 303 aa15.66■□□□□ 0.1
SHMT2-232ENST00000557487 CCM2Q9BSQ5 444 aa15.66■□□□□ 0.1
SHMT2-232ENST00000557487 EMILIN2Q9BXX0 1053 aa15.66■□□□□ 0.1
SHMT2-232ENST00000557487 TMEM38AQ9H6F2 299 aa15.66■□□□□ 0.1
SHMT2-232ENST00000557487 FBXL12Q9NXK8 326 aa15.66■□□□□ 0.1
SHMT2-232ENST00000557487 BTBD3Q9Y2F9 522 aa15.66■□□□□ 0.1
SHMT2-232ENST00000557487 HCN4Q9Y3Q4 1203 aa15.66■□□□□ 0.1
SHMT2-232ENST00000557487 BACE2Q9Y5Z0 518 aa15.66■□□□□ 0.1
SHMT2-232ENST00000557487 GABRR3A8MPY1 467 aa15.66■□□□□ 0.1
SHMT2-232ENST00000557487 HTR3AP46098 478 aa15.66■□□□□ 0.1
SHMT2-232ENST00000557487 ACLYP53396 1101 aa15.66■□□□□ 0.1
SHMT2-232ENST00000557487 B4GALNT1Q00973 533 aa15.66■□□□□ 0.1
SHMT2-232ENST00000557487 RHAGQ02094 409 aa15.66■□□□□ 0.1
SHMT2-232ENST00000557487 HSPA14Q0VDF9 509 aa15.66■□□□□ 0.1
SHMT2-232ENST00000557487 GCNT6Q5T4J0 391 aa15.66■□□□□ 0.1
SHMT2-232ENST00000557487 C1orf53Q5VUE5 145 aa15.66■□□□□ 0.1
SHMT2-232ENST00000557487 CRTC1Q6UUV9 634 aa15.66■□□□□ 0.1
SHMT2-232ENST00000557487 TMC5Q6UXY8 1006 aa15.66■□□□□ 0.1
SHMT2-232ENST00000557487 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP15.66■□□□□ 0.1
SHMT2-232ENST00000557487 SLC22A15Q8IZD6 547 aa15.66■□□□□ 0.1
SHMT2-232ENST00000557487 CYP4Z2PQ8N1L4 340 aa15.66■□□□□ 0.1
SHMT2-232ENST00000557487 OR52N2Q8NGI0 321 aa15.66■□□□□ 0.1
SHMT2-232ENST00000557487 OR6F1Q8NGZ6 308 aa15.66■□□□□ 0.1
SHMT2-232ENST00000557487 SKA2Q8WVK7 121 aaPredicted RBP15.66■□□□□ 0.1
SHMT2-232ENST00000557487 C17orf50Q8WW18 174 aa15.66■□□□□ 0.1
SHMT2-232ENST00000557487 Q96MT0 163 aa15.66■□□□□ 0.1
SHMT2-232ENST00000557487 CASD1Q96PB1 797 aa15.66■□□□□ 0.1
SHMT2-232ENST00000557487 TAPBPLQ9BX59 468 aa15.66■□□□□ 0.1
SHMT2-232ENST00000557487 MS4A12Q9NXJ0 267 aa15.66■□□□□ 0.1
SHMT2-232ENST00000557487 ATP6V1HQ9UI12 483 aa15.66■□□□□ 0.1
SHMT2-232ENST00000557487 PCDHB7Q9Y5E2 793 aa15.66■□□□□ 0.1
SHMT2-232ENST00000557487 HOXA2O43364 376 aa15.65■□□□□ 0.1
SHMT2-232ENST00000557487 TNFRSF21O75509 655 aa15.65■□□□□ 0.1
SHMT2-232ENST00000557487 GCM2O75603 506 aaPredicted RBP15.65■□□□□ 0.1
SHMT2-232ENST00000557487 NUDT7P0C024 238 aa15.65■□□□□ 0.1
SHMT2-232ENST00000557487 ENDOUP21128 410 aaKnown RBP15.65■□□□□ 0.1
SHMT2-232ENST00000557487 IDSP22304 550 aa15.65■□□□□ 0.1
SHMT2-232ENST00000557487 TCEA1P23193 301 aaKnown RBP15.65■□□□□ 0.1
SHMT2-232ENST00000557487 DDOSTP39656 456 aa15.65■□□□□ 0.1
SHMT2-232ENST00000557487 NR4A2P43354 598 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms