RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 C17orf50Q8WW18 174 aa16.88■□□□□ 0.29
SYNE3-202ENST00000553340 BHMTQ93088 406 aa16.88■□□□□ 0.29
SYNE3-202ENST00000553340 TSEN34Q9BSV6 310 aaKnown RBP16.88■□□□□ 0.29
SYNE3-202ENST00000553340 DYRK4Q9NR20 520 aa16.88■□□□□ 0.29
SYNE3-202ENST00000553340 ZNF282Q9UDV7 671 aaPredicted RBP16.88■□□□□ 0.29
SYNE3-202ENST00000553340 STOML2Q9UJZ1 356 aa16.88■□□□□ 0.29
SYNE3-202ENST00000553340 MAPRE3Q9UPY8 281 aa16.88■□□□□ 0.29
SYNE3-202ENST00000553340 TRAPPC4Q9Y296 219 aa16.88■□□□□ 0.29
SYNE3-202ENST00000553340 GRIP1Q9Y3R0 1128 aa16.88■□□□□ 0.29
SYNE3-202ENST00000553340 CFAP20Q9Y6A4 193 aaKnown RBP16.88■□□□□ 0.29
SYNE3-202ENST00000553340 C2orf78A6NCI8 922 aa16.88■□□□□ 0.29
SYNE3-202ENST00000553340 KRT87PA6NCN2 255 aa16.88■□□□□ 0.29
SYNE3-202ENST00000553340 GLTPD2A6NH11 291 aa16.88■□□□□ 0.29
SYNE3-202ENST00000553340 GFYI3L273 518 aa16.88■□□□□ 0.29
SYNE3-202ENST00000553340 M0R129 80 aa16.88■□□□□ 0.29
SYNE3-202ENST00000553340 ADAM12O43184 909 aa16.88■□□□□ 0.29
SYNE3-202ENST00000553340 SLITRK5O94991 958 aa16.88■□□□□ 0.29
SYNE3-202ENST00000553340 CELF2O95319 508 aaKnown RBP16.88■□□□□ 0.29
SYNE3-202ENST00000553340 HMGA1P17096 107 aaKnown RBP16.88■□□□□ 0.29
SYNE3-202ENST00000553340 ITGA2P17301 1181 aa16.88■□□□□ 0.29
SYNE3-202ENST00000553340 CD22P20273 847 aa16.88■□□□□ 0.29
SYNE3-202ENST00000553340 CD72P21854 359 aa16.88■□□□□ 0.29
SYNE3-202ENST00000553340 ATAD3CQ5T2N8 411 aa16.88■□□□□ 0.29
SYNE3-202ENST00000553340 CRTC1Q6UUV9 634 aa16.88■□□□□ 0.29
SYNE3-202ENST00000553340 TAS1R1Q7RTX1 841 aa16.88■□□□□ 0.29
SYNE3-202ENST00000553340 ATCAYQ86WG3 371 aa16.88■□□□□ 0.29
SYNE3-202ENST00000553340 APCDD1Q8J025 514 aa16.88■□□□□ 0.29
SYNE3-202ENST00000553340 SETD6Q8TBK2 473 aa16.88■□□□□ 0.29
SYNE3-202ENST00000553340 TP53INP1Q96A56 240 aa16.88■□□□□ 0.29
SYNE3-202ENST00000553340 METTL2AQ96IZ6 378 aaKnown RBP16.88■□□□□ 0.29
SYNE3-202ENST00000553340 SNX18Q96RF0 628 aa16.88■□□□□ 0.29
SYNE3-202ENST00000553340 C3orf14Q9HBI5 128 aa16.88■□□□□ 0.29
SYNE3-202ENST00000553340 DDX28Q9NUL7 540 aaKnown RBP16.88■□□□□ 0.29
SYNE3-202ENST00000553340 CNOT2Q9NZN8 540 aaKnown RBP16.88■□□□□ 0.29
SYNE3-202ENST00000553340 SH3D21A4FU49 640 aa16.87■□□□□ 0.29
SYNE3-202ENST00000553340 MFN2O95140 757 aa16.87■□□□□ 0.29
SYNE3-202ENST00000553340 SERPINA4P29622 427 aa16.87■□□□□ 0.29
SYNE3-202ENST00000553340 TNFSF8P32971 234 aa16.87■□□□□ 0.29
SYNE3-202ENST00000553340 TMC5Q6UXY8 1006 aa16.87■□□□□ 0.29
SYNE3-202ENST00000553340 TRNT1Q96Q11 434 aaKnown RBP16.87■□□□□ 0.29
SYNE3-202ENST00000553340 PRM3Q9NNZ6 103 aa16.87■□□□□ 0.29
SYNE3-202ENST00000553340 ENOPH1Q9UHY7 261 aa16.87■□□□□ 0.29
SYNE3-202ENST00000553340 TMEM98Q9Y2Y6 226 aa16.87■□□□□ 0.29
SYNE3-202ENST00000553340 H3BQ06 376 aaPredicted RBP16.87■□□□□ 0.29
SYNE3-202ENST00000553340 ANXA4P09525 319 aaPredicted RBP16.87■□□□□ 0.29
SYNE3-202ENST00000553340 CSNK1DP48730 415 aa16.87■□□□□ 0.29
SYNE3-202ENST00000553340 TP53BP2Q13625 1128 aa16.87■□□□□ 0.29
SYNE3-202ENST00000553340 LRRC66Q68CR7 880 aa16.87■□□□□ 0.29
SYNE3-202ENST00000553340 CAMKMTQ7Z624 323 aa16.87■□□□□ 0.29
SYNE3-202ENST00000553340 NRARPQ7Z6K4 114 aa16.87■□□□□ 0.29
SYNE3-202ENST00000553340 OR9Q2Q8NGE9 314 aa16.87■□□□□ 0.29
SYNE3-202ENST00000553340 OR4A15Q8NGL6 344 aa16.87■□□□□ 0.29
SYNE3-202ENST00000553340 C11orf24Q96F05 449 aaPredicted RBP16.87■□□□□ 0.29
SYNE3-202ENST00000553340 OR2A14Q96R47 310 aa16.87■□□□□ 0.29
SYNE3-202ENST00000553340 LYSMD1Q96S90 227 aa16.87■□□□□ 0.29
SYNE3-202ENST00000553340 THSD1Q9NS62 852 aa16.87■□□□□ 0.29
SYNE3-202ENST00000553340 SH3BP4Q9P0V3 963 aa16.87■□□□□ 0.29
SYNE3-202ENST00000553340 HCSTQ9UBK5 93 aa16.87■□□□□ 0.29
SYNE3-202ENST00000553340 TBC1D24Q9ULP9 559 aa16.87■□□□□ 0.29
SYNE3-202ENST00000553340 ARHGAP33O14559 1287 aa16.86■□□□□ 0.29
SYNE3-202ENST00000553340 CAPN5O15484 640 aaPredicted RBP16.86■□□□□ 0.29
SYNE3-202ENST00000553340 MPZL2O60487 215 aa16.86■□□□□ 0.29
SYNE3-202ENST00000553340 IGSF6O95976 241 aa16.86■□□□□ 0.29
SYNE3-202ENST00000553340 POU2F1P14859 743 aa16.86■□□□□ 0.29
SYNE3-202ENST00000553340 SMAD3P84022 425 aaKnown RBP16.86■□□□□ 0.29
SYNE3-202ENST00000553340 PTGES3Q15185 160 aaKnown RBP16.86■□□□□ 0.29
SYNE3-202ENST00000553340 TAF12Q16514 161 aa16.86■□□□□ 0.29
SYNE3-202ENST00000553340 TPRG1Q6ZUI0 275 aa16.86■□□□□ 0.29
SYNE3-202ENST00000553340 UTS2BQ765I0 119 aa16.86■□□□□ 0.29
SYNE3-202ENST00000553340 KRT73Q86Y46 540 aa16.86■□□□□ 0.29
SYNE3-202ENST00000553340 BBS7Q8IWZ6 715 aa16.86■□□□□ 0.29
SYNE3-202ENST00000553340 C1orf52Q8N6N3 182 aaKnown RBP16.86■□□□□ 0.29
SYNE3-202ENST00000553340 WDR36Q8NI36 951 aaKnown RBP16.86■□□□□ 0.29
SYNE3-202ENST00000553340 UPF1Q92900 1129 aaKnown RBP eCLIP16.86■□□□□ 0.29
SYNE3-202ENST00000553340 TCF25Q9BQ70 676 aa16.86■□□□□ 0.29
SYNE3-202ENST00000553340 MARCH7Q9H992 704 aa16.86■□□□□ 0.29
SYNE3-202ENST00000553340 SMURF1Q9HCE7 757 aa16.86■□□□□ 0.29
SYNE3-202ENST00000553340 HCN4Q9Y3Q4 1203 aa16.86■□□□□ 0.29
SYNE3-202ENST00000553340 IGLV3-16A0A075B6K0 115 aa16.86■□□□□ 0.29
SYNE3-202ENST00000553340 ANKRD34BA5PLL1 514 aa16.86■□□□□ 0.29
SYNE3-202ENST00000553340 MGAT4DA6NG13 374 aa16.86■□□□□ 0.29
SYNE3-202ENST00000553340 A6NL46 340 aa16.86■□□□□ 0.29
SYNE3-202ENST00000553340 HSD3B1P14060 373 aa16.86■□□□□ 0.29
SYNE3-202ENST00000553340 IDSP22304 550 aa16.86■□□□□ 0.29
SYNE3-202ENST00000553340 HSD3B2P26439 372 aa16.86■□□□□ 0.29
SYNE3-202ENST00000553340 GATMP50440 423 aa16.86■□□□□ 0.29
SYNE3-202ENST00000553340 LRRC74AQ0VAA2 488 aa16.86■□□□□ 0.29
SYNE3-202ENST00000553340 DOC2AQ14183 400 aa16.86■□□□□ 0.29
SYNE3-202ENST00000553340 PLEKHS1Q5SXH7 462 aa16.86■□□□□ 0.29
SYNE3-202ENST00000553340 GATAD2AQ86YP4 633 aa16.86■□□□□ 0.29
SYNE3-202ENST00000553340 COQ8BQ96D53 544 aa16.86■□□□□ 0.29
SYNE3-202ENST00000553340 MAPKAP1Q9BPZ7 522 aa16.86■□□□□ 0.29
SYNE3-202ENST00000553340 CLN6Q9NWW5 311 aa16.86■□□□□ 0.29
SYNE3-202ENST00000553340 MBD1Q9UIS9 605 aaPredicted RBP16.86■□□□□ 0.29
SYNE3-202ENST00000553340 RGS5O15539 181 aa16.85■□□□□ 0.29
SYNE3-202ENST00000553340 UGT2B17O75795 530 aa16.85■□□□□ 0.29
SYNE3-202ENST00000553340 ETFAP13804 333 aa16.85■□□□□ 0.29
SYNE3-202ENST00000553340 OR1D2P34982 312 aa16.85■□□□□ 0.29
SYNE3-202ENST00000553340 RAE1P78406 368 aaKnown RBP16.85■□□□□ 0.29
SYNE3-202ENST00000553340 MRPS15P82914 257 aaKnown RBP16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms