RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 CLEC3AO75596 197 aa13.38□□□□□ -0.27
PTCH1-226ENST00000553011 TBX6O95947 436 aaPredicted RBP13.38□□□□□ -0.27
PTCH1-226ENST00000553011 RECKO95980 971 aa13.38□□□□□ -0.27
PTCH1-226ENST00000553011 PROCP04070 461 aa13.38□□□□□ -0.27
PTCH1-226ENST00000553011 UMODP07911 640 aa13.38□□□□□ -0.27
PTCH1-226ENST00000553011 PCNAP12004 261 aa13.38□□□□□ -0.27
PTCH1-226ENST00000553011 ALOX12P18054 663 aa13.38□□□□□ -0.27
PTCH1-226ENST00000553011 TSPAN8P19075 237 aa13.38□□□□□ -0.27
PTCH1-226ENST00000553011 ATP5F1P24539 256 aaPredicted RBP13.38□□□□□ -0.27
PTCH1-226ENST00000553011 HNRNPH1P31943 449 aaKnown RBP13.38□□□□□ -0.27
PTCH1-226ENST00000553011 OTX2P32243 289 aa13.38□□□□□ -0.27
PTCH1-226ENST00000553011 CCT5P48643 541 aa13.38□□□□□ -0.27
PTCH1-226ENST00000553011 CDH13P55290 713 aa13.38□□□□□ -0.27
PTCH1-226ENST00000553011 RAB8AP61006 207 aa13.38□□□□□ -0.27
PTCH1-226ENST00000553011 RHDQ02161 417 aa13.38□□□□□ -0.27
PTCH1-226ENST00000553011 TBR1Q16650 682 aa13.38□□□□□ -0.27
PTCH1-226ENST00000553011 DEFB134Q4QY38 66 aa13.38□□□□□ -0.27
PTCH1-226ENST00000553011 UNC50Q53HI1 259 aa13.38□□□□□ -0.27
PTCH1-226ENST00000553011 VWA2Q5GFL6 755 aa13.38□□□□□ -0.27
PTCH1-226ENST00000553011 GRHL2Q6ISB3 625 aa13.38□□□□□ -0.27
PTCH1-226ENST00000553011 MED27Q6P2C8 311 aa13.38□□□□□ -0.27
PTCH1-226ENST00000553011 RNF175Q8N4F7 328 aa13.38□□□□□ -0.27
PTCH1-226ENST00000553011 UTP15Q8TED0 518 aaKnown RBP13.38□□□□□ -0.27
PTCH1-226ENST00000553011 ZNF483Q8TF39 744 aaPredicted RBP13.38□□□□□ -0.27
PTCH1-226ENST00000553011 TTC9Q92623 222 aa13.38□□□□□ -0.27
PTCH1-226ENST00000553011 ZIM3Q96PE6 472 aa13.38□□□□□ -0.27
PTCH1-226ENST00000553011 CDK15Q96Q40 435 aa13.38□□□□□ -0.27
PTCH1-226ENST00000553011 TMEM237Q96Q45 408 aa13.38□□□□□ -0.27
PTCH1-226ENST00000553011 C1QTNF3Q9BXJ4 246 aa13.38□□□□□ -0.27
PTCH1-226ENST00000553011 RHBGQ9H310 441 aa13.38□□□□□ -0.27
PTCH1-226ENST00000553011 SEMA4BQ9NPR2 832 aaPredicted RBP13.38□□□□□ -0.27
PTCH1-226ENST00000553011 HCN3Q9P1Z3 774 aa13.38□□□□□ -0.27
PTCH1-226ENST00000553011 ZNF282Q9UDV7 671 aaPredicted RBP13.38□□□□□ -0.27
PTCH1-226ENST00000553011 POLHQ9Y253 713 aa13.38□□□□□ -0.27
PTCH1-226ENST00000553011 RNF11Q9Y3C5 154 aa13.38□□□□□ -0.27
PTCH1-226ENST00000553011 COL6A6A6NMZ7 2263 aa13.37□□□□□ -0.27
PTCH1-226ENST00000553011 IGLV3-12A0A075B6K2 115 aa13.37□□□□□ -0.27
PTCH1-226ENST00000553011 A0A0G2JN53 185 aa13.37□□□□□ -0.27
PTCH1-226ENST00000553011 A0A1B0GTL3 188 aa13.37□□□□□ -0.27
PTCH1-226ENST00000553011 G3V2L1 256 aa13.37□□□□□ -0.27
PTCH1-226ENST00000553011 H0YIG0 161 aa13.37□□□□□ -0.27
PTCH1-226ENST00000553011 PPP6CO00743 305 aa13.37□□□□□ -0.27
PTCH1-226ENST00000553011 GALR3O60755 368 aaPredicted RBP13.37□□□□□ -0.27
PTCH1-226ENST00000553011 DNAJB6O75190 326 aa13.37□□□□□ -0.27
PTCH1-226ENST00000553011 CD63P08962 238 aa13.37□□□□□ -0.27
PTCH1-226ENST00000553011 ZGLP1P0C6A0 271 aa13.37□□□□□ -0.27
PTCH1-226ENST00000553011 SMIM10L1P0DMW3 83 aa13.37□□□□□ -0.27
PTCH1-226ENST00000553011 CREB1P16220 341 aa13.37□□□□□ -0.27
PTCH1-226ENST00000553011 GSTM2P28161 218 aa13.37□□□□□ -0.27
PTCH1-226ENST00000553011 ARL1P40616 181 aaPredicted RBP13.37□□□□□ -0.27
PTCH1-226ENST00000553011 CCNG1P51959 295 aa13.37□□□□□ -0.27
PTCH1-226ENST00000553011 STXBP1P61764 594 aaKnown RBP13.37□□□□□ -0.27
PTCH1-226ENST00000553011 HERVK_113P63132 956 aa13.37□□□□□ -0.27
PTCH1-226ENST00000553011 OLR1P78380 273 aa13.37□□□□□ -0.27
PTCH1-226ENST00000553011 OCA2Q04671 838 aa13.37□□□□□ -0.27
PTCH1-226ENST00000553011 KLC1Q07866 573 aa13.37□□□□□ -0.27
PTCH1-226ENST00000553011 TRAF3Q13114 568 aa13.37□□□□□ -0.27
PTCH1-226ENST00000553011 HERC3Q15034 1050 aa13.37□□□□□ -0.27
PTCH1-226ENST00000553011 CPSF6Q16630 551 aaKnown RBP eCLIP13.37□□□□□ -0.27
PTCH1-226ENST00000553011 LINC00303Q3SY05 128 aa13.37□□□□□ -0.27
PTCH1-226ENST00000553011 ZNF678Q5SXM1 525 aa13.37□□□□□ -0.27
PTCH1-226ENST00000553011 BEND6Q5SZJ8 279 aaPredicted RBP13.37□□□□□ -0.27
PTCH1-226ENST00000553011 CEP85LQ5SZL2 805 aa13.37□□□□□ -0.27
PTCH1-226ENST00000553011 LIPJQ5W064 366 aa13.37□□□□□ -0.27
PTCH1-226ENST00000553011 FAM219BQ5XKK7 198 aa13.37□□□□□ -0.27
PTCH1-226ENST00000553011 ZYG11AQ6WRX3 759 aa13.37□□□□□ -0.27
PTCH1-226ENST00000553011 ABHD13Q7L211 337 aa13.37□□□□□ -0.27
PTCH1-226ENST00000553011 LAPTM4BQ86VI4 370 aa13.37□□□□□ -0.27
PTCH1-226ENST00000553011 ZC3H7AQ8IWR0 971 aaKnown RBP13.37□□□□□ -0.27
PTCH1-226ENST00000553011 LAS2Q8IYD9 372 aa13.37□□□□□ -0.27
PTCH1-226ENST00000553011 BANPQ8N9N5 519 aa13.37□□□□□ -0.27
PTCH1-226ENST00000553011 L3MBTL4Q8NA19 623 aa13.37□□□□□ -0.27
PTCH1-226ENST00000553011 OR7G3Q8NG95 312 aa13.37□□□□□ -0.27
PTCH1-226ENST00000553011 OR5T3Q8NGG3 340 aa13.37□□□□□ -0.27
PTCH1-226ENST00000553011 ZNF473Q8WTR7 871 aaKnown RBP13.37□□□□□ -0.27
PTCH1-226ENST00000553011 UBE2E3Q969T4 207 aa13.37□□□□□ -0.27
PTCH1-226ENST00000553011 ATP6V1E2Q96A05 226 aa13.37□□□□□ -0.27
PTCH1-226ENST00000553011 MIEF2Q96C03 454 aa13.37□□□□□ -0.27
PTCH1-226ENST00000553011 MS4A6EQ96DS6 147 aa13.37□□□□□ -0.27
PTCH1-226ENST00000553011 SMIM10Q96HG1 83 aa13.37□□□□□ -0.27
PTCH1-226ENST00000553011 APOPT1Q96IL0 206 aa13.37□□□□□ -0.27
PTCH1-226ENST00000553011 SEC16BQ96JE7 1060 aa13.37□□□□□ -0.27
PTCH1-226ENST00000553011 CATSPER2Q96P56 530 aa13.37□□□□□ -0.27
PTCH1-226ENST00000553011 ERVK-6Q9BXR3 956 aa13.37□□□□□ -0.27
PTCH1-226ENST00000553011 MKKSQ9NPJ1 570 aaPredicted RBP13.37□□□□□ -0.27
PTCH1-226ENST00000553011 GRID1Q9ULK0 1009 aa13.37□□□□□ -0.27
PTCH1-226ENST00000553011 MAP4K5Q9Y4K4 846 aa13.37□□□□□ -0.27
PTCH1-226ENST00000553011 TNRC6AQ8NDV7 1962 aaKnown RBP13.36□□□□□ -0.27
PTCH1-226ENST00000553011 LRIT2A6NDA9 550 aa13.36□□□□□ -0.27
PTCH1-226ENST00000553011 URADA6NGE7 173 aa13.36□□□□□ -0.27
PTCH1-226ENST00000553011 UGDHO60701 494 aa13.36□□□□□ -0.27
PTCH1-226ENST00000553011 SH3BGRLO75368 114 aa13.36□□□□□ -0.27
PTCH1-226ENST00000553011 SPAG7O75391 227 aa13.36□□□□□ -0.27
PTCH1-226ENST00000553011 JRKO75564 520 aa13.36□□□□□ -0.27
PTCH1-226ENST00000553011 SUPT7LO94864 414 aa13.36□□□□□ -0.27
PTCH1-226ENST00000553011 CLDN9O95484 217 aa13.36□□□□□ -0.27
PTCH1-226ENST00000553011 ITGB2P05107 769 aa13.36□□□□□ -0.27
PTCH1-226ENST00000553011 MYL2P10916 166 aa13.36□□□□□ -0.27
PTCH1-226ENST00000553011 PRKAA2P54646 552 aa13.36□□□□□ -0.27
PTCH1-226ENST00000553011 ATP1A4Q13733 1029 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms